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Homology
BLAST of jgi.p|Trimin1|353395 vs. uniprot
Match: A0A835ZDJ7_9STRA (mRNA binding family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ7_9STRA) HSP 1 Score: 444 bits (1143), Expect = 2.560e-151 Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 1
Query: 1 MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPXVAAAPAATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAGWGSXXXXXXXXXXXTXXXXXXXXXXXXDNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRHDRQSGTGRGHEVKKGXXXXXNWGTQADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDNSMTLEEFQEKLRLEREAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKKPVSKPKKPAKQTFVDVGFTAPPIERSGGRGRXXXXXXXXXXXXDXGGGRXXXXXXXXXXXXXXXGNGXXXYXXXXXXXXXXXXXXXXXXXXXXYXXXXXXDRQQRGGGAPHDSGIDLKDESLFPAL 1278
MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPXVAAAPAATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAGWGSXXXXXXXXXXXTXXXXXXXXXXXXDNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRHDRQSGTGRGHEVKKGXXXXXNWGTQADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDNSMTLEEFQEKLRLEREAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKKPVSKPKKPAKQTFVDVGFTAPPIERSGGRGRXXXXXXXXXXXXDXGGGRXXXXXXXXXXXXXXXGNGXXXYXXXXXXXXXXXXXXXXXXXXXXYXXXXXXDRQQRGGGAPHDSGIDLKDESLFPAL
Sbjct: 1 MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPXVAAAPAATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAGWGSXXXXXXXXXXXTXXXXXXXXXXXXDNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRHDRQSGTGRGHEVKKGXXXXXNWGTQADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDNSMTLEEFQEKLRLEREAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKKPVSKPKKPAKQTFVDVGFTAPPIERSGGRGRXXXXXXXXXXXXDXGGGRXXXXXXXXXXXXXXXGNGXXXYXXXXXXXXXXXXXXXXXXXXXXYXXXXXXDRQQRGGGAPHDSGIDLKDESLFPAL 426
BLAST of jgi.p|Trimin1|353395 vs. uniprot
Match: A0A836CLQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLQ6_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 7.730e-11 Identity = 47/82 (57.32%), Postives = 51/82 (62.20%), Query Frame = -2
Query: 723 MGGAVNPTSTKVCLAGFLGLLTGFLASAPPRAPAPNSLSAGTASFLRMRPPANSASSTFFSCTAPKSSLAASRSRRSFSWNS 968
MGGA NPTS VCLAGFL F ++A SFLR+RPPA SASST FS TAP SSLAASRS S +WNS
Sbjct: 1 MGGARNPTSVNVCLAGFLARAF-FSSAALAXXXXXXXXXXXXXSFLRIRPPAKSASSTVFSLTAPNSSLAASRSALSLAWNS 81
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|353395|estExt_Genemark1.C_Ctg_1610015 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 353717 |
| Track | FilteredModels1 |
| ProteinId | 353395 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13107 ID=mRNA_13107|Name=jgi.p|Trimin1|353395|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1281bp|location=Sequence derived from alignment at Contig_161:66814..68968+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGATCCGGAGCAGCGGGCCACCTTCAACCCCTTCGCGGCGCTCGACTC
CGACGAGGAGCAAGAGAAGCCCGTCACCGTCGCCCCTAAGAAGGCGCCCA
AGCCTAAGAAGGTCAAGCCTGCGGCGCCCCCCAAGGTTGCTGCAGCTCCT
GCTGCCACCAAAGCTCCGGAGAGGAGGGAGGGCGACTCGCGCACCGGTCG
GCGGCCGCGCGGCGATGGCGACCGCCCCTCGCGCGCTGCCAACGGCGACA
GCGCGCCGCGCAACACCGGTGGCGACTGGAACAGCGGCGACACTGCTGGC
TGGGGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGTGGCGGTACTGGCTG
GGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGACAACGCGGGCTGGGGCA
GCAATGCCGGTGGCGGCAGCGGCGGCAGCGGCGGCTATGGAGGCAGTGGC
GGCTACGGCGACAGCGGTGGCGGCGGCGAGCGCAGGCACGACCGGCAGTC
CGGCACCGGCCGCGGCCACGAGGTGAAGAAGGGCGGCGGCGGCGGGCACA
ACTGGGGGACGCAGGCCGACGACGCGGCGGCGGCGGAGGACGACGCGAGC
GGCGCTGTCGTTGTCGCTGACGAGGGCGGCGGCGGTTACGAAGCTGATCT
TGCCGCCTCCGCTGGCGCGCCGTCCGCGGCAGCGGCGCACGAGGAGGAGG
TGGACAACAGCATGACGCTCGAGGAATTCCAGGAGAAGCTGCGCCTCGAG
CGCGAGGCCGCGAGCGAGCTCTTCGGCGCCGTGCAGGAGAAGAAGGTCGA
CGACGCCGAATTCGCCGGCGGCCGCATCCGTAAGAAGGAGGCGGTCCCCG
CCGACAAGGAGTTTGGCGCGGGCGCACGCGGCGGCGCCGACGCCAAGAAG
CCCGTCAGCAAGCCCAAGAAGCCCGCCAAGCAGACCTTTGTCGACGTAGG
GTTCACGGCGCCGCCCATTGAGCGCAGCGGGGGGCGCGGACGCGGCGGCG
GGCGCGGCGGCGGGCGCGGCGGCGGCCGCGACGGCGGCGGCGGCAGGGGG
CGCGGCGGCGGCCGCGACGGCGGCGGCGGCAGGGGGCGCGGCGGCAATGG
CGGCGGCGGCTACGGCGGCGGAGGTGGCGGCGGCTACAGCGGCGGCGGTG
GTGGCGGATACAGCGGCGGCGGGGGCGGGTATGGCGGTGGTTACGGAGGC
GACAGGCAGCAGCGGGGCGGCGGCGCGCCGCACGACAGCGGCATCGACCT
GAAGGACGAGTCCTTGTTCCCCGCGCTCTAG back to topprotein sequence of jgi.p|Trimin1|353395 >Trimin1|353395|estExt_Genemark1.C_Ctg_1610015 ID=Trimin1|353395|estExt_Genemark1.C_Ctg_1610015|Name=jgi.p|Trimin1|353395|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=427bp
MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPKVAAAP
AATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAG
WGSGGGGGGGGGGGTGWGSGGGGGGGGDNAGWGSNAGGGSGGSGGYGGSG
GYGDSGGGGERRHDRQSGTGRGHEVKKGGGGGHNWGTQADDAAAAEDDAS
GAVVVADEGGGGYEADLAASAGAPSAAAAHEEEVDNSMTLEEFQEKLRLE
REAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKK
PVSKPKKPAKQTFVDVGFTAPPIERSGGRGRGGGRGGGRGGGRDGGGGRG
RGGGRDGGGGRGRGGNGGGGYGGGGGGGYSGGGGGGYSGGGGGYGGGYGG
DRQQRGGGAPHDSGIDLKDESLFPAL* back to topmRNA from alignment at Contig_161:66814..68968+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_13107 ID=mRNA_13107|Name=jgi.p|Trimin1|353395|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2155bp|location=Sequence derived from alignment at Contig_161:66814..68968+ (Tribonema minus UTEX_B_3156 )
ATGGATCCGGAGCAGCGGGTCGGCGTCGCGTTTGAAGTTCGACGTTCAAC
TTGGGGGGAATCGCCCCCCCCCACACCTTTTTGATCGCCAGACCCACGCA
CAGCAGCCTGAGGAGCGTCTGAAGCGAGCAAGCACCCCCAGTGGATGGCC
AGAGGCAGTGTGGAGGTCTAGCCGTTGACCAAAAAATGGTAAGAGCTGGT
GTGTCTGGGACTTTGTGGCGAGAGATCAACTTCCAGCAGGGCCGTGCATG
GATGGCATTGCGACCTCCACAGTGTAGTGCCTGTCTAGAGAGCATATCGC
ATTCTTGGCTGCTGGCATGCGTATAAAGGCAGGTTAACAACTCCGCTGGT
CAGCGAGCTCCCTTCGCAACAGCAGCTTGGATCCTAGTTCCCAGAGCGTT
TCTGTGCGATCCAATCCAATCACGGATCGCACTCTCAATGCGCGGCAGCA
GCAGCTGCGCTAGTTGCACACTCGTTTCGTTCTATCAAAACATCACTAAA
ATGTCTTCTCCTGCCCCTGGCGCTTGCTGCTGGGTGATCTCAGGCCACCT
TCAACCCCTTCGCGGCGCTCGACTCCGACGAGGAGCAAGAGAAGCCCGTC
ACCGTCGCCCCTAAGAAGGCGCCCAAGCCTAAGAAGGTCAAGCCTGCGGC
GCCCCCCAAGGTTGCTGCAGCTCCTGCTGCCACCAAAGCTCCGGAGAGGA
GGGAGGGCGACTCGCGCACCGGTCGGCGGTACGCGCTTTTCTTGCATCAG
TTGGATGTTGGCTTGGCATCACAAGTGGCAGTGCATCAACCGGACCCAAT
GTTGCCTTTCACTTTTCTATAAAAAGCGTTACAAAGAATATGCTTGGTGC
AGGCGCAGGAGCTGTGGCTGCCAATTCGGTGCCAGCTGCAGCTTGCCACT
CCATTCGCACCGTGAATCGCACACAGGAAGGCCTGATAAAGTTAACTCCA
GCGCCTGCCGCTGCGCTGGTCAGTAATCCTAACAATCCAGGACTTGCAAA
TGGTGTTGGTGTCGCTCACACCCATCAAATTTGCCAAACTCACCACCAGA
TTCTGCACATGACCACCACGACAACAGGCCGCGCGGCGATGGCGACCGCC
CCTCGCGCGCTGCCAACGGCGACAGCGCGCCGCGCAACACCGGTGGCGAC
TGGAACAGCGGCGACACTGCTGGCTGGGGCAGCGGCGGCGGCGGCGGCGG
CGGCGGGGGTGGCGGTACTGGCTGGGGCAGCGGCGGCGGCGGCGGCGGCG
GCGGCGACAACGCGGGCTGGGGCAGCAATGCCGGTGGCGGCAGCGGCGGC
AGCGGCGGCTATGGAGGCAGTGGCGGCTACGGCGACAGCGGTGGCGGCGG
CGAGCGCAGGCACGACCGGCAGTCCGGCACCGGCCGCGGCCACGAGGTGA
AGAAGGGCGGCGGCGGCGGGCACAACTGGGGGACGCAGGCCGACGACGCG
GCGGCGGCGGAGGACGACGCGAGCGGCGCTGTCGTTGTCGCTGACGAGGG
CGGCGGCGGTTACGAAGCTGATCTTGCCGCCTCCGCTGGCGCGCCGTCCG
CGGCAGCGGCGCACGAGGAGGAGGTGGACAACAGCATGACGCTCGAGGAA
TTCCAGGAGAAGCTGCGCCTCGAGCGCGAGGCCGCGAGCGAGCTCTTCGG
CGCCGTGCAGGAGAAGAAGGTCGACGACGCCGAATTCGCCGGCGGCCGCA
TCCGTAAGAAGGAGGCGGTCCCCGCCGACAAGGAGTTTGGCGCGGGCGCA
CGCGGCGGCGCCGACGCCAAGAAGCCCGTCAGCAAGCCCAAGAAGCCCGC
CAAGCAGACCTTTGTCGACGTAGGGTTCACGGCGCCGCCCATTGAGCGCA
GCGGGGGGCGCGGACGCGGCGGCGGGCGCGGCGGCGGGCGCGGCGGCGGC
CGCGACGGCGGCGGCGGCAGGGGGCGCGGCGGCGGCCGCGACGGCGGCGG
CGGCAGGGGGCGCGGCGGCAATGGCGGCGGCGGCTACGGCGGCGGAGGTG
GCGGCGGCTACAGCGGCGGCGGTGGTGGCGGATACAGCGGCGGCGGGGGC
GGGTATGGCGGTGGTTACGGAGGCGACAGGCAGCAGCGGGGCGGCGGCGC
GCCGCACGACAGCGGCATCGACCTGAAGGACGAGTCCTTGTTCCCCGCGC
TCTAG back to topCoding sequence (CDS) from alignment at Contig_161:66814..68968+ >mRNA_13107 ID=mRNA_13107|Name=jgi.p|Trimin1|353395|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1281bp|location=Sequence derived from alignment at Contig_161:66814..68968+ (Tribonema minus UTEX_B_3156 )
ATGGATCCGGAGCAGCGGGCCACCTTCAACCCCTTCGCGGCGCTCGACTC
CGACGAGGAGCAAGAGAAGCCCGTCACCGTCGCCCCTAAGAAGGCGCCCA
AGCCTAAGAAGGTCAAGCCTGCGGCGCCCCCCAAGGTTGCTGCAGCTCCT
GCTGCCACCAAAGCTCCGGAGAGGAGGGAGGGCGACTCGCGCACCGGTCG
GCGGCCGCGCGGCGATGGCGACCGCCCCTCGCGCGCTGCCAACGGCGACA
GCGCGCCGCGCAACACCGGTGGCGACTGGAACAGCGGCGACACTGCTGGC
TGGGGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGTGGCGGTACTGGCTG
GGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGACAACGCGGGCTGGGGCA
GCAATGCCGGTGGCGGCAGCGGCGGCAGCGGCGGCTATGGAGGCAGTGGC
GGCTACGGCGACAGCGGTGGCGGCGGCGAGCGCAGGCACGACCGGCAGTC
CGGCACCGGCCGCGGCCACGAGGTGAAGAAGGGCGGCGGCGGCGGGCACA
ACTGGGGGACGCAGGCCGACGACGCGGCGGCGGCGGAGGACGACGCGAGC
GGCGCTGTCGTTGTCGCTGACGAGGGCGGCGGCGGTTACGAAGCTGATCT
TGCCGCCTCCGCTGGCGCGCCGTCCGCGGCAGCGGCGCACGAGGAGGAGG
TGGACAACAGCATGACGCTCGAGGAATTCCAGGAGAAGCTGCGCCTCGAG
CGCGAGGCCGCGAGCGAGCTCTTCGGCGCCGTGCAGGAGAAGAAGGTCGA
CGACGCCGAATTCGCCGGCGGCCGCATCCGTAAGAAGGAGGCGGTCCCCG
CCGACAAGGAGTTTGGCGCGGGCGCACGCGGCGGCGCCGACGCCAAGAAG
CCCGTCAGCAAGCCCAAGAAGCCCGCCAAGCAGACCTTTGTCGACGTAGG
GTTCACGGCGCCGCCCATTGAGCGCAGCGGGGGGCGCGGACGCGGCGGCG
GGCGCGGCGGCGGGCGCGGCGGCGGCCGCGACGGCGGCGGCGGCAGGGGG
CGCGGCGGCGGCCGCGACGGCGGCGGCGGCAGGGGGCGCGGCGGCAATGG
CGGCGGCGGCTACGGCGGCGGAGGTGGCGGCGGCTACAGCGGCGGCGGTG
GTGGCGGATACAGCGGCGGCGGGGGCGGGTATGGCGGTGGTTACGGAGGC
GACAGGCAGCAGCGGGGCGGCGGCGCGCCGCACGACAGCGGCATCGACCT
GAAGGACGAGTCCTTGTTCCCCGCGCTCTAG back to top
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