Trimin1|353395|estExt_Genemark1.C_Ctg_1610015 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353395
Unique Name	Trimin1\|353395\|estExt_Genemark1.C_Ctg_1610015
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	427

Homology

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BLAST of jgi.p|Trimin1|353395 vs. uniprot
Match: A0A835ZDJ7_9STRA (mRNA binding family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ7_9STRA)

HSP 1 Score: 444 bits (1143), Expect = 2.560e-151
Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 0

Query:    1 MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPXVAAAPAATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAGWGSXXXXXXXXXXXTXXXXXXXXXXXXDNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRHDRQSGTGRGHEVKKGXXXXXNWGTQADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDNSMTLEEFQEKLRLEREAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKKPVSKPKKPAKQTFVDVGFTAPPIERSGGRGRXXXXXXXXXXXXDXGGGRXXXXXXXXXXXXXXXGNGXXXYXXXXXXXXXXXXXXXXXXXXXXYXXXXXXDRQQRGGGAPHDSGIDLKDESLFPAL 426
            MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPXVAAAPAATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAGWGSXXXXXXXXXXXTXXXXXXXXXXXXDNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRHDRQSGTGRGHEVKKGXXXXXNWGTQADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDNSMTLEEFQEKLRLEREAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKKPVSKPKKPAKQTFVDVGFTAPPIERSGGRGRXXXXXXXXXXXXDXGGGRXXXXXXXXXXXXXXXGNGXXXYXXXXXXXXXXXXXXXXXXXXXXYXXXXXXDRQQRGGGAPHDSGIDLKDESLFPAL
Sbjct:    1 MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPXVAAAPAATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAGWGSXXXXXXXXXXXTXXXXXXXXXXXXDNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRHDRQSGTGRGHEVKKGXXXXXNWGTQADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDNSMTLEEFQEKLRLEREAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKKPVSKPKKPAKQTFVDVGFTAPPIERSGGRGRXXXXXXXXXXXXDXGGGRXXXXXXXXXXXXXXXGNGXXXYXXXXXXXXXXXXXXXXXXXXXXYXXXXXXDRQQRGGGAPHDSGIDLKDESLFPAL 426

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353395 vs. uniprot

BLAST of jgi.p|Trimin1|353395 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZDJ7_9STRA	2.560e-151	100.00	mRNA binding family-domain-containing protein n=1 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006861	Hyaluronan/mRNA-binding protein	SMART	SM01233	HABP4_PAI_RBP1_2	coord: 159..267 e-value: 1.4E-18 score: 77.8
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 159..253 e-value: 2.7E-15 score: 57.2
None	No IPR available	GENE3D	6.10.140.1040		coord: 157..270 e-value: 6.0E-5 score: 25.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 284..426
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..178
None	No IPR available	PANTHER	PTHR12299:SF17	AT19571P-RELATED	coord: 8..426
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 8..426

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_161	contig	Contig_161:66814..68968 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353395	mRNA_13107	Tribonema minus UTEX_B_3156	mRNA	Contig_161 66814..68968 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353395|estExt_Genemark1.C_Ctg_1610015 ID=Trimin1|353395|estExt_Genemark1.C_Ctg_1610015|Name=jgi.p|Trimin1|353395|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=427bp
MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPKVAAAP
AATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAG
WGSGGGGGGGGGGGTGWGSGGGGGGGGDNAGWGSNAGGGSGGSGGYGGSG
GYGDSGGGGERRHDRQSGTGRGHEVKKGGGGGHNWGTQADDAAAAEDDAS
GAVVVADEGGGGYEADLAASAGAPSAAAAHEEEVDNSMTLEEFQEKLRLE
REAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKK
PVSKPKKPAKQTFVDVGFTAPPIERSGGRGRGGGRGGGRGGGRDGGGGRG
RGGGRDGGGGRGRGGNGGGGYGGGGGGGYSGGGGGGYSGGGGGYGGGYGG
DRQQRGGGAPHDSGIDLKDESLFPAL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006861	HABP4_PAIRBP1-bd
IPR039764	HABP4/SERBP1