mRNA_13107 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|353395
Unique Name	mRNA_13107
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|353395 vs. uniprot
Match: A0A835ZDJ7_9STRA (mRNA binding family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ7_9STRA)

HSP 1 Score: 444 bits (1143), Expect = 2.560e-151
Identity = 426/426 (100.00%), Postives = 426/426 (100.00%), Query Frame = 1

Query:    1 MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPXVAAAPAATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAGWGSXXXXXXXXXXXTXXXXXXXXXXXXDNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRHDRQSGTGRGHEVKKGXXXXXNWGTQADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDNSMTLEEFQEKLRLEREAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKKPVSKPKKPAKQTFVDVGFTAPPIERSGGRGRXXXXXXXXXXXXDXGGGRXXXXXXXXXXXXXXXGNGXXXYXXXXXXXXXXXXXXXXXXXXXXYXXXXXXDRQQRGGGAPHDSGIDLKDESLFPAL 1278
            MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPXVAAAPAATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAGWGSXXXXXXXXXXXTXXXXXXXXXXXXDNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRHDRQSGTGRGHEVKKGXXXXXNWGTQADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDNSMTLEEFQEKLRLEREAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKKPVSKPKKPAKQTFVDVGFTAPPIERSGGRGRXXXXXXXXXXXXDXGGGRXXXXXXXXXXXXXXXGNGXXXYXXXXXXXXXXXXXXXXXXXXXXYXXXXXXDRQQRGGGAPHDSGIDLKDESLFPAL
Sbjct:    1 MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPXVAAAPAATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAGWGSXXXXXXXXXXXTXXXXXXXXXXXXDNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRHDRQSGTGRGHEVKKGXXXXXNWGTQADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDNSMTLEEFQEKLRLEREAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKKPVSKPKKPAKQTFVDVGFTAPPIERSGGRGRXXXXXXXXXXXXDXGGGRXXXXXXXXXXXXXXXGNGXXXYXXXXXXXXXXXXXXXXXXXXXXYXXXXXXDRQQRGGGAPHDSGIDLKDESLFPAL 426

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BLAST of jgi.p|Trimin1|353395 vs. uniprot
Match: A0A836CLQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLQ6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 7.730e-11
Identity = 47/82 (57.32%), Postives = 51/82 (62.20%), Query Frame = -2

Query:  723 MGGAVNPTSTKVCLAGFLGLLTGFLASAPPRAPAPNSLSAGTASFLRMRPPANSASSTFFSCTAPKSSLAASRSRRSFSWNS 968
            MGGA NPTS  VCLAGFL     F ++A               SFLR+RPPA SASST FS TAP SSLAASRS  S +WNS
Sbjct:    1 MGGARNPTSVNVCLAGFLARAF-FSSAALAXXXXXXXXXXXXXSFLRIRPPAKSASSTVFSLTAPNSSLAASRSALSLAWNS 81

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353395 vs. uniprot

BLAST of jgi.p|Trimin1|353395 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZDJ7_9STRA	2.560e-151	100.00	mRNA binding family-domain-containing protein n=1 ...	[more]
A0A836CLQ6_9STRA	7.730e-11	57.32	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_161	contig	Contig_161:66814..68968 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|353395\|estExt_Genemark1.C_Ctg_1610015
Hectar predicted targeting category	other localisation
TranscriptId	353717
Track	FilteredModels1
ProteinId	353395

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353395	gene_13107	Tribonema minus UTEX_B_3156	gene	Contig_161 66814..68968 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13107_1	exon_13107_1	Tribonema minus UTEX_B_3156	exon	Contig_161 66814..66831 +
exon_13107_2	exon_13107_2	Tribonema minus UTEX_B_3156	exon	Contig_161 67357..67541 +
exon_13107_3	exon_13107_3	Tribonema minus UTEX_B_3156	exon	Contig_161 67891..68968 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13107	CDS_13107	Tribonema minus UTEX_B_3156	CDS	Contig_161 66814..66831 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353395	Trimin1\|353395\|estExt_Genemark1.C_Ctg_1610015	Tribonema minus UTEX_B_3156	polypeptide	Contig_161 66814..68968 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_161:66814..68968+
coding sequence from alignment at Contig_161:66814..68968+

spliced messenger RNA

>mRNA_13107 ID=mRNA_13107|Name=jgi.p|Trimin1|353395|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1281bp|location=Sequence derived from alignment at Contig_161:66814..68968+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCGGAGCAGCGGGCCACCTTCAACCCCTTCGCGGCGCTCGACTC
CGACGAGGAGCAAGAGAAGCCCGTCACCGTCGCCCCTAAGAAGGCGCCCA
AGCCTAAGAAGGTCAAGCCTGCGGCGCCCCCCAAGGTTGCTGCAGCTCCT
GCTGCCACCAAAGCTCCGGAGAGGAGGGAGGGCGACTCGCGCACCGGTCG
GCGGCCGCGCGGCGATGGCGACCGCCCCTCGCGCGCTGCCAACGGCGACA
GCGCGCCGCGCAACACCGGTGGCGACTGGAACAGCGGCGACACTGCTGGC
TGGGGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGTGGCGGTACTGGCTG
GGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGACAACGCGGGCTGGGGCA
GCAATGCCGGTGGCGGCAGCGGCGGCAGCGGCGGCTATGGAGGCAGTGGC
GGCTACGGCGACAGCGGTGGCGGCGGCGAGCGCAGGCACGACCGGCAGTC
CGGCACCGGCCGCGGCCACGAGGTGAAGAAGGGCGGCGGCGGCGGGCACA
ACTGGGGGACGCAGGCCGACGACGCGGCGGCGGCGGAGGACGACGCGAGC
GGCGCTGTCGTTGTCGCTGACGAGGGCGGCGGCGGTTACGAAGCTGATCT
TGCCGCCTCCGCTGGCGCGCCGTCCGCGGCAGCGGCGCACGAGGAGGAGG
TGGACAACAGCATGACGCTCGAGGAATTCCAGGAGAAGCTGCGCCTCGAG
CGCGAGGCCGCGAGCGAGCTCTTCGGCGCCGTGCAGGAGAAGAAGGTCGA
CGACGCCGAATTCGCCGGCGGCCGCATCCGTAAGAAGGAGGCGGTCCCCG
CCGACAAGGAGTTTGGCGCGGGCGCACGCGGCGGCGCCGACGCCAAGAAG
CCCGTCAGCAAGCCCAAGAAGCCCGCCAAGCAGACCTTTGTCGACGTAGG
GTTCACGGCGCCGCCCATTGAGCGCAGCGGGGGGCGCGGACGCGGCGGCG
GGCGCGGCGGCGGGCGCGGCGGCGGCCGCGACGGCGGCGGCGGCAGGGGG
CGCGGCGGCGGCCGCGACGGCGGCGGCGGCAGGGGGCGCGGCGGCAATGG
CGGCGGCGGCTACGGCGGCGGAGGTGGCGGCGGCTACAGCGGCGGCGGTG
GTGGCGGATACAGCGGCGGCGGGGGCGGGTATGGCGGTGGTTACGGAGGC
GACAGGCAGCAGCGGGGCGGCGGCGCGCCGCACGACAGCGGCATCGACCT
GAAGGACGAGTCCTTGTTCCCCGCGCTCTAG

protein sequence of jgi.p|Trimin1|353395

>Trimin1|353395|estExt_Genemark1.C_Ctg_1610015 ID=Trimin1|353395|estExt_Genemark1.C_Ctg_1610015|Name=jgi.p|Trimin1|353395|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=427bp
MDPEQRATFNPFAALDSDEEQEKPVTVAPKKAPKPKKVKPAAPPKVAAAP
AATKAPERREGDSRTGRRPRGDGDRPSRAANGDSAPRNTGGDWNSGDTAG
WGSGGGGGGGGGGGTGWGSGGGGGGGGDNAGWGSNAGGGSGGSGGYGGSG
GYGDSGGGGERRHDRQSGTGRGHEVKKGGGGGHNWGTQADDAAAAEDDAS
GAVVVADEGGGGYEADLAASAGAPSAAAAHEEEVDNSMTLEEFQEKLRLE
REAASELFGAVQEKKVDDAEFAGGRIRKKEAVPADKEFGAGARGGADAKK
PVSKPKKPAKQTFVDVGFTAPPIERSGGRGRGGGRGGGRGGGRDGGGGRG
RGGGRDGGGGRGRGGNGGGGYGGGGGGGYSGGGGGGYSGGGGGYGGGYGG
DRQQRGGGAPHDSGIDLKDESLFPAL*

mRNA from alignment at Contig_161:66814..68968+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13107 ID=mRNA_13107|Name=jgi.p|Trimin1|353395|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2155bp|location=Sequence derived from alignment at Contig_161:66814..68968+ (Tribonema minus UTEX_B_3156 )
ATGGATCCGGAGCAGCGGGTCGGCGTCGCGTTTGAAGTTCGACGTTCAAC
TTGGGGGGAATCGCCCCCCCCCACACCTTTTTGATCGCCAGACCCACGCA
CAGCAGCCTGAGGAGCGTCTGAAGCGAGCAAGCACCCCCAGTGGATGGCC
AGAGGCAGTGTGGAGGTCTAGCCGTTGACCAAAAAATGGTAAGAGCTGGT
GTGTCTGGGACTTTGTGGCGAGAGATCAACTTCCAGCAGGGCCGTGCATG
GATGGCATTGCGACCTCCACAGTGTAGTGCCTGTCTAGAGAGCATATCGC
ATTCTTGGCTGCTGGCATGCGTATAAAGGCAGGTTAACAACTCCGCTGGT
CAGCGAGCTCCCTTCGCAACAGCAGCTTGGATCCTAGTTCCCAGAGCGTT
TCTGTGCGATCCAATCCAATCACGGATCGCACTCTCAATGCGCGGCAGCA
GCAGCTGCGCTAGTTGCACACTCGTTTCGTTCTATCAAAACATCACTAAA
ATGTCTTCTCCTGCCCCTGGCGCTTGCTGCTGGGTGATCTCAGGCCACCT
TCAACCCCTTCGCGGCGCTCGACTCCGACGAGGAGCAAGAGAAGCCCGTC
ACCGTCGCCCCTAAGAAGGCGCCCAAGCCTAAGAAGGTCAAGCCTGCGGC
GCCCCCCAAGGTTGCTGCAGCTCCTGCTGCCACCAAAGCTCCGGAGAGGA
GGGAGGGCGACTCGCGCACCGGTCGGCGGTACGCGCTTTTCTTGCATCAG
TTGGATGTTGGCTTGGCATCACAAGTGGCAGTGCATCAACCGGACCCAAT
GTTGCCTTTCACTTTTCTATAAAAAGCGTTACAAAGAATATGCTTGGTGC
AGGCGCAGGAGCTGTGGCTGCCAATTCGGTGCCAGCTGCAGCTTGCCACT
CCATTCGCACCGTGAATCGCACACAGGAAGGCCTGATAAAGTTAACTCCA
GCGCCTGCCGCTGCGCTGGTCAGTAATCCTAACAATCCAGGACTTGCAAA
TGGTGTTGGTGTCGCTCACACCCATCAAATTTGCCAAACTCACCACCAGA
TTCTGCACATGACCACCACGACAACAGGCCGCGCGGCGATGGCGACCGCC
CCTCGCGCGCTGCCAACGGCGACAGCGCGCCGCGCAACACCGGTGGCGAC
TGGAACAGCGGCGACACTGCTGGCTGGGGCAGCGGCGGCGGCGGCGGCGG
CGGCGGGGGTGGCGGTACTGGCTGGGGCAGCGGCGGCGGCGGCGGCGGCG
GCGGCGACAACGCGGGCTGGGGCAGCAATGCCGGTGGCGGCAGCGGCGGC
AGCGGCGGCTATGGAGGCAGTGGCGGCTACGGCGACAGCGGTGGCGGCGG
CGAGCGCAGGCACGACCGGCAGTCCGGCACCGGCCGCGGCCACGAGGTGA
AGAAGGGCGGCGGCGGCGGGCACAACTGGGGGACGCAGGCCGACGACGCG
GCGGCGGCGGAGGACGACGCGAGCGGCGCTGTCGTTGTCGCTGACGAGGG
CGGCGGCGGTTACGAAGCTGATCTTGCCGCCTCCGCTGGCGCGCCGTCCG
CGGCAGCGGCGCACGAGGAGGAGGTGGACAACAGCATGACGCTCGAGGAA
TTCCAGGAGAAGCTGCGCCTCGAGCGCGAGGCCGCGAGCGAGCTCTTCGG
CGCCGTGCAGGAGAAGAAGGTCGACGACGCCGAATTCGCCGGCGGCCGCA
TCCGTAAGAAGGAGGCGGTCCCCGCCGACAAGGAGTTTGGCGCGGGCGCA
CGCGGCGGCGCCGACGCCAAGAAGCCCGTCAGCAAGCCCAAGAAGCCCGC
CAAGCAGACCTTTGTCGACGTAGGGTTCACGGCGCCGCCCATTGAGCGCA
GCGGGGGGCGCGGACGCGGCGGCGGGCGCGGCGGCGGGCGCGGCGGCGGC
CGCGACGGCGGCGGCGGCAGGGGGCGCGGCGGCGGCCGCGACGGCGGCGG
CGGCAGGGGGCGCGGCGGCAATGGCGGCGGCGGCTACGGCGGCGGAGGTG
GCGGCGGCTACAGCGGCGGCGGTGGTGGCGGATACAGCGGCGGCGGGGGC
GGGTATGGCGGTGGTTACGGAGGCGACAGGCAGCAGCGGGGCGGCGGCGC
GCCGCACGACAGCGGCATCGACCTGAAGGACGAGTCCTTGTTCCCCGCGC
TCTAG

Coding sequence (CDS) from alignment at Contig_161:66814..68968+

>mRNA_13107 ID=mRNA_13107|Name=jgi.p|Trimin1|353395|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1281bp|location=Sequence derived from alignment at Contig_161:66814..68968+ (Tribonema minus UTEX_B_3156 )
ATGGATCCGGAGCAGCGGGCCACCTTCAACCCCTTCGCGGCGCTCGACTC
CGACGAGGAGCAAGAGAAGCCCGTCACCGTCGCCCCTAAGAAGGCGCCCA
AGCCTAAGAAGGTCAAGCCTGCGGCGCCCCCCAAGGTTGCTGCAGCTCCT
GCTGCCACCAAAGCTCCGGAGAGGAGGGAGGGCGACTCGCGCACCGGTCG
GCGGCCGCGCGGCGATGGCGACCGCCCCTCGCGCGCTGCCAACGGCGACA
GCGCGCCGCGCAACACCGGTGGCGACTGGAACAGCGGCGACACTGCTGGC
TGGGGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGTGGCGGTACTGGCTG
GGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGACAACGCGGGCTGGGGCA
GCAATGCCGGTGGCGGCAGCGGCGGCAGCGGCGGCTATGGAGGCAGTGGC
GGCTACGGCGACAGCGGTGGCGGCGGCGAGCGCAGGCACGACCGGCAGTC
CGGCACCGGCCGCGGCCACGAGGTGAAGAAGGGCGGCGGCGGCGGGCACA
ACTGGGGGACGCAGGCCGACGACGCGGCGGCGGCGGAGGACGACGCGAGC
GGCGCTGTCGTTGTCGCTGACGAGGGCGGCGGCGGTTACGAAGCTGATCT
TGCCGCCTCCGCTGGCGCGCCGTCCGCGGCAGCGGCGCACGAGGAGGAGG
TGGACAACAGCATGACGCTCGAGGAATTCCAGGAGAAGCTGCGCCTCGAG
CGCGAGGCCGCGAGCGAGCTCTTCGGCGCCGTGCAGGAGAAGAAGGTCGA
CGACGCCGAATTCGCCGGCGGCCGCATCCGTAAGAAGGAGGCGGTCCCCG
CCGACAAGGAGTTTGGCGCGGGCGCACGCGGCGGCGCCGACGCCAAGAAG
CCCGTCAGCAAGCCCAAGAAGCCCGCCAAGCAGACCTTTGTCGACGTAGG
GTTCACGGCGCCGCCCATTGAGCGCAGCGGGGGGCGCGGACGCGGCGGCG
GGCGCGGCGGCGGGCGCGGCGGCGGCCGCGACGGCGGCGGCGGCAGGGGG
CGCGGCGGCGGCCGCGACGGCGGCGGCGGCAGGGGGCGCGGCGGCAATGG
CGGCGGCGGCTACGGCGGCGGAGGTGGCGGCGGCTACAGCGGCGGCGGTG
GTGGCGGATACAGCGGCGGCGGGGGCGGGTATGGCGGTGGTTACGGAGGC
GACAGGCAGCAGCGGGGCGGCGGCGCGCCGCACGACAGCGGCATCGACCT
GAAGGACGAGTCCTTGTTCCCCGCGCTCTAG