mRNA_13071 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|172808 vs. uniprot
Match: A0A835YH66_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH66_9STRA) HSP 1 Score: 289 bits (739), Expect = 1.180e-98 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1 Query: 1 MAGTGCLICFDPLQGQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPSSASAGKRRRSSSTDSAAPLGVIALGSEAGGVSIWDLQLGVQTTLTDGNARSPISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKLK 450 MAGTGCLICFDPLQGQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPSSASAGKRRRSSSTDSAAPLGVIALGSEAGGVSIWDLQLGVQTTLTDGNARSPISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKLK Sbjct: 1 MAGTGCLICFDPLQGQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPSSASAGKRRRSSSTDSAAPLGVIALGSEAGGVSIWDLQLGVQTTLTDGNARSPISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKLK 150
BLAST of jgi.p|Trimin1|172808 vs. uniprot
Match: A0A836CFG8_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFG8_9STRA) HSP 1 Score: 146 bits (369), Expect = 6.680e-40 Identity = 74/140 (52.86%), Postives = 107/140 (76.43%), Query Frame = 1 Query: 40 QGQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPS--SASAGKRRRSSSTDSAAPLGVIALGSEAGGVSIWDLQLGV-QTTLTDGNARSPISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKLK 450 +GQLLA++++ +R +LWDV +GT RQQYV+A+H ++ SAIAWHRP +AS K+R SS A+ LG++ALGS+ G V++WDLQ GV +T L+D +A + +SC+AFS DG++LY+ S DK VVEW +E+ ++LRKLK Sbjct: 81 KGQLLAVVNSSSRFKLWDVTTGTARQQYVDAKHAARAVSAIAWHRPQPPAASQSKKRSSSGAQKASSLGLLALGSDDGAVTVWDLQRGVVRTVLSDPSAAAAVSCLAFSLDGTQLYSGSKDDKKVVEWGLEAGEVLRKLK 220
BLAST of jgi.p|Trimin1|172808 vs. uniprot
Match: D7FJM9_ECTSI (Utp12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM9_ECTSI) HSP 1 Score: 127 bits (320), Expect = 2.130e-31 Identity = 70/150 (46.67%), Postives = 104/150 (69.33%), Query Frame = 1 Query: 4 AGTGCLICFDPLQGQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPSSASAGKRRRSSSTDSAAPLGVIALGSEAGGVSIWDLQLGVQT-TLTDGNARSPISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKLK 450 + +G L FDP G+L A +S+DNRLR+W+ SG +RQQYVE +HL+K ++ IAWHR SS + KR S ++ ++ LG+IALG++ G VS+WDL+ G +L +G ++ FS+DGS L++ASS K+VVEW++E+ + RKLK Sbjct: 7 SSSGQLCIFDPASGELYASVSSDNRLRIWNTASGDLRQQYVEPRHLAKQYTCIAWHRRSSKKS-KRGSSGASKPSSSLGMIALGTDKGSVSVWDLKRGALAYSLGEGEGFPSVTSGGFSADGSSLFSASS-GKEVVEWNVETGTVARKLK 154
BLAST of jgi.p|Trimin1|172808 vs. uniprot
Match: A0A5D6XKP2_9STRA (Utp12 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKP2_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.000e-19 Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 1 Query: 28 FDPLQGQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPSSASAGKRRRSSSTDSAAPLGVIALGSEAGGVSIWDLQLG--VQTTLTDGNARS---PISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKLK 450 F P Q + A +S DNRLR+WDV SG ++ E HLS ++ I W S +R+ ++ SAAPLG++ALG+ AG V +WDLQ G VQT +D + + ++ +AF+S GS LY++SS +K V+EW+++ + RK + Sbjct: 348 FAPSQ-EYFAAVSEDNRLRVWDVSSGALQHDLRERDHLSYKYTCITWTLSSPLLKKSAKRAKASGSAAPLGLVALGTSAGAVVVWDLQKGEVVQTLASDKDKDAHGAAVTDVAFNSQGSLLYSSSS-EKHVLEWNVKDGAVTRKFR 491
BLAST of jgi.p|Trimin1|172808 vs. uniprot
Match: A0A7S2V312_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V312_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.490e-19 Identity = 56/145 (38.62%), Postives = 83/145 (57.24%), Query Frame = 1 Query: 19 LICFDPLQGQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPSSASAGKRRRSSS-TDSAAPLGVIALGSEAGGVSIWDLQLGVQTTLTDGNARSPISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKLK 450 L FD Q + AI+SADNR+R+W+ +G +R YV+ + L+ +S W RP S G +R SS + LG IA+G + GGV IWDLQ GV + + +S ++ + FS DG+ +YT S K + W ++S K+ K K Sbjct: 17 LFKFDAEQ-ECCAIISADNRIRIWETSTGKLRSHYVDRKQLAVKYSCFDWWRPLQKSKGLKRNSSGKAKDLSSLGKIAVGLDHGGVIIWDLQRGVVSQRLSEDVQSSVTGIVFSQDGNIVYTVSK-GKQLSAWDLKSGKLAAKWK 159
BLAST of jgi.p|Trimin1|172808 vs. uniprot
Match: A0A4D9D9A1_9STRA (Utp12 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9A1_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.540e-18 Identity = 50/136 (36.76%), Postives = 89/136 (65.44%), Query Frame = 1 Query: 43 GQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPSSASAGKRRRSSSTDSAAPLGVIALGSEAGGVSIWDLQLGVQTT-LTDGNARSPISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKL 447 G+LL ++ DNR+R++ +GT+RQ+Y+E H + ++ +AW + + + + + S A +G++ALG++ G VS+WDL GV L +G + + MAFS+DGS+LYT+++ D+DV+EWS+ + + R+L Sbjct: 8 GELLVHVATDNRIRVYSAAAGTLRQKYIEKDHFAFQYTCLAWMQGLAWNDKNLTKVAHNPSNA-MGLLALGTDRGCVSVWDLTRGVLARRLGEGQSLKRFTGMAFSADGSRLYTSNAGDEDVLEWSLGTGECRRRL 142
BLAST of jgi.p|Trimin1|172808 vs. uniprot
Match: A0A6A5AM11_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AM11_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.920e-17 Identity = 49/153 (32.03%), Postives = 96/153 (62.75%), Query Frame = 1 Query: 19 LICFDPLQGQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPS---SASAGKRRRSSSTDSAAPLGVIALGSEAGGVSIWDLQLG------VQTTLTDGNARSPISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKLK 450 L F P Q ++I S DNR+++WDV SG++RQ+ E HL+ ++++AW + S ++S+ ++ + + + LGV+ALG+ G + +W+L+ G + T +G+A + ++ + F+S G+ L++ SS +K+V+EW+++ + + RK K Sbjct: 10 LAAFSPCQSFFVSI-SDDNRVKVWDVASGSLRQELKERDHLTYKYTSLAWTKASPWAASSSSSSKKGTKRSATSDLGVLALGTTTGAIVVWNLEKGEVGVRLARETSENGHAAA-VTDIVFASSGATLFS-SSNEKNVLEWNVKDASVTRKFK 159
BLAST of jgi.p|Trimin1|172808 vs. uniprot
Match: A0A484E0A9_BRELC (Utp12 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0A9_BRELC) HSP 1 Score: 86.3 bits (212), Expect = 8.610e-17 Identity = 51/135 (37.78%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 55 AILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPSSASAGKRRRSSSTDSAAPLGVIALGSEAGGVSIWDLQLGVQTTLTDGNA---RSPISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKLK 450 A +S D RL++WDV+SG+++Q+ E HLS ++++AW +P + + ++RSS+ D LG++ALG+ +G + +WDL G NA S + +AF+ GS LY+ SS +K V+EWS+ S + RK + Sbjct: 12 ATVSEDGRLKVWDVLSGSLQQELKERDHLSYRYTSVAWTQPKNKT---KKRSSAND----LGLLALGTSSGTIILWDLATGDVKHTLQANAVHGASVVQALAFNPQGSLLYS-SSKEKHVLEWSISSGSVERKFR 138
BLAST of jgi.p|Trimin1|172808 vs. uniprot
Match: A0A6G0WWJ7_9STRA (Utp12 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWJ7_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.160e-16 Identity = 52/149 (34.90%), Postives = 94/149 (63.09%), Query Frame = 1 Query: 19 LICFDPLQGQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPSSASAGKRRRSSSTDSAAPLGVIALGSEAGGVSIWDLQLG-VQTTLTDGNARS----PISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKLK 450 L F P Q ++I S DNR+++WDV SG++RQ+ E HL+ ++++AW + S + K +R++++D LGV+ALG+ G + +W+L+ G V L+ N+ + ++ + F+S G+ LY+A+ T+K V+EW+++ + RK K Sbjct: 8 LAAFSPCQSFFVSI-SDDNRVKIWDVASGSLRQELKERDHLNYKYTSLAWTKASVWAGKKAKRTANSD----LGVLALGTTTGAIVVWNLEKGEVAQRLSRENSENGHAAAVTDIVFTSCGATLYSAA-TEKHVLEWNVKEGSVHRKFK 150
BLAST of jgi.p|Trimin1|172808 vs. uniprot
Match: A0A485LGV1_9STRA (Aste57867_21150 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGV1_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.160e-16 Identity = 52/151 (34.44%), Postives = 97/151 (64.24%), Query Frame = 1 Query: 19 LICFDPLQGQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHFSAIAWHRPSSASAGKR--RRSSSTDSAAPLGVIALGSEAGGVSIWDLQLG-VQTTLTDGNARS----PISCMAFSSDGSKLYTASSTDKDVVEWSMESSKILRKLK 450 L F P Q ++I S DNR+++WDV +G++RQ+ E HL+ ++++AW + S S+GK+ +R++S + LG++ALG+ G + +W+L+ G V L+ N+ + ++ + F+S G+ L++AS T+K+V+EW+++ + RK K Sbjct: 9 LAAFSPCQSFFISI-SDDNRVKIWDVAAGSLRQELKERDHLNYKYTSLAWTKTSVWSSGKKGNKRAASGE----LGMLALGTTTGAIVVWNLEKGEVAQRLSRDNSENGHAAAVTDIVFASSGATLFSAS-TEKNVLEWNVKDGSVARKFK 153 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172808 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13071 ID=mRNA_13071|Name=jgi.p|Trimin1|172808|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_96:394092..394701- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCCGGTACGGGCTGCCTGATTTGCTTTGATCCTCTGCAAGGGCAGCTback to top protein sequence of jgi.p|Trimin1|172808 >Trimin1|172808|e_gw1.96.34.1 ID=Trimin1|172808|e_gw1.96.34.1|Name=jgi.p|Trimin1|172808|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp MAGTGCLICFDPLQGQLLAILSADNRLRLWDVVSGTVRQQYVEAQHLSKHback to top mRNA from alignment at Contig_96:394092..394701- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13071 ID=mRNA_13071|Name=jgi.p|Trimin1|172808|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=610bp|location=Sequence derived from alignment at Contig_96:394092..394701- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_96:394092..394701- >mRNA_13071 ID=mRNA_13071|Name=jgi.p|Trimin1|172808|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_96:394092..394701- (Tribonema minus UTEX_B_3156 )back to top |