mRNA_13050 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|100891 vs. uniprot
Match: A0A836C710_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C710_9STRA) HSP 1 Score: 395 bits (1014), Expect = 2.170e-137 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 Query: 61 MHSGGSQGSESPDRLGRWTVGGGLSPSTEQELGGRPLLLKFLPTVKAWDMRTGGTMPPQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 657
MHSGGSQGSESPDRLGRWTVGGGLSPSTEQELGGRPLLLKFLPTVKAWDMRTGGTMPPQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH
Sbjct: 1 MHSGGSQGSESPDRLGRWTVGGGLSPSTEQELGGRPLLLKFLPTVKAWDMRTGGTMPPQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 199
BLAST of jgi.p|Trimin1|100891 vs. uniprot
Match: A0A6H5KF19_9PHAE (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF19_9PHAE) HSP 1 Score: 207 bits (528), Expect = 1.100e-63 Identity = 114/175 (65.14%), Postives = 127/175 (72.57%), Query Frame = 1 Query: 133 SPSTEQELGGRPLLLKFLPTVKAWDMRTGGTMPPQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQPIQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 657
S S +LG R L FLP V MP PP L ESCG +LIMGT GG GMG +FG+FLGAMGDMQP+Q+INGREVPQAP EQAR AY T RSL M +NFASFSAIFM SECVIEKMRGK DMMNSVY GC TG AFG+K GP+ A GC+GMA FSA++D +MGH
Sbjct: 21 SRSLHPQLGSR--LPFFLPWVPRPAAGAADAMP-TPPVLTESCGFKLIMGTVGGAGMGFVFGLFLGAMGDMQPLQMINGREVPQAPFREQARLAYKQTADRSLSMGRNFASFSAIFMGSECVIEKMRGKTDMMNSVYAGCATGAAFGMKQGPQAACFGCVGMATFSALMDKLMGH 192
BLAST of jgi.p|Trimin1|100891 vs. uniprot
Match: A0A7S2P255_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P255_9STRA) HSP 1 Score: 147 bits (372), Expect = 7.100e-40 Identity = 82/165 (49.70%), Postives = 102/165 (61.82%), Query Frame = 1 Query: 166 PLLLKFLPTVKAWDMRTGGTMPPQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQP-IQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 657
P L+ ++PT PP + ESCG + +G GG MGLL G+FLGAM DM P + VING+EVPQAPL EQAR T + + ++NFA + +F SEC++EK RGKHD+ N V GC+TG A K GP+ A GC G AAFS VIDAVMGH
Sbjct: 61 PYLIPWMPTFNG-----AQEPPPDFSFMTESCGIKSAIGLFGGAAMGLLMGVFLGAMSDMTPPVTVINGKEVPQAPLKEQARTVMRATGEKCVYWSRNFAFITGVFAGSECLVEKARGKHDVWNQVLSGCVTGAAIQAKQGPQAAALGCGGFAAFSLVIDAVMGH 220
BLAST of jgi.p|Trimin1|100891 vs. uniprot
Match: A0A6U3RYY1_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RYY1_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.060e-37 Identity = 82/164 (50.00%), Postives = 100/164 (60.98%), Query Frame = 1 Query: 169 LLLKFLPTVKAWDMRTGGT-MPPQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQP-IQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMG 654
L K LP + W +G +PP L ESCG + +G GG MGLL G+FLGAM DM P + VI G+EVPQAPL EQ R T +S+ + FA + +F SEC++EK RGK D+ NSV GC+TG A KAGP A GC G AAFS VID+VMG
Sbjct: 100 LTSKSLPYFQPWKPTSGPEQLPPDFTFLSESCGGKAAIGVFGGGVMGLLMGVFLGAMSDMTPPVTVIGGKEVPQAPLKEQMRTTMRATAEKSMYWCRQFAFITGVFSGSECLVEKYRGKTDVWNSVLSGCVTGAAMQAKAGPSSAAFGCGGFAAFSLVIDSVMG 263
BLAST of jgi.p|Trimin1|100891 vs. uniprot
Match: A0A448Z601_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z601_9STRA) HSP 1 Score: 139 bits (349), Expect = 7.340e-36 Identity = 80/165 (48.48%), Postives = 98/165 (59.39%), Query Frame = 1 Query: 169 LLLKFLPTVKAWDMRTGGT-MPPQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQP-IQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 657
L K LP W G T +PP L + C + +G GG MGLL G+FLGA+ D QP IQV G++VPQAP EQAR T +S+ +NFA + +F SEC++EK RGKHDM N V GCITG A AGP+ A GC G AAFS VID +MG+
Sbjct: 106 LTRKSLPYFMPWKTSGGPTEIPPNYAWLMDGCAGKAAIGVFGGGVMGLLMGVFLGALSDSQPPIQVAGGKDVPQAPFKEQARYTMRATAEKSMYWCRNFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAHAGPQAAAVGCGGFAAFSIVIDKIMGN 270
BLAST of jgi.p|Trimin1|100891 vs. uniprot
Match: A0A7S1TYW7_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYW7_9STRA) HSP 1 Score: 136 bits (342), Expect = 9.130e-36 Identity = 70/136 (51.47%), Postives = 87/136 (63.97%), Query Frame = 1 Query: 253 ESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQP-IQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 657
ESC R ++G+ G MGL+ G+FLGAMGD+ P I + G+E PQ PL EQAR AY T RS+G A++F + +A+F +ECVIEK RG+HD N V GC G GP A GC G AAFSA +AVMGH
Sbjct: 56 ESCVGRAVLGSFAGGAMGLVLGVFLGAMGDLNPPIYFVKGKEAPQPPLAEQARTAYRTTAERSIGFARSFFALTALFSGTECVIEKFRGRHDGWNPVLSGCAAGAMMSASGGPTAACMGCAGFAAFSAAAEAVMGH 191
BLAST of jgi.p|Trimin1|100891 vs. uniprot
Match: B7FQ85_PHATC (Mitochondrial import inner membrane translocase subunit TIM22 (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ85_PHATC) HSP 1 Score: 134 bits (337), Expect = 1.000e-35 Identity = 74/136 (54.41%), Postives = 88/136 (64.71%), Query Frame = 1 Query: 247 LGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQP-IQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVM 651
L SCG + +G GG MGLL G+FLGAM D P +QVI GREVPQAPL EQ + T +SL +NFA + +F SEC++EK RGKHD+ NSV GCITG A K+GP+ A GC G AAFS VID M
Sbjct: 1 LTNSCGGKAAIGVIGGGVMGLLMGVFLGAMSDATPPVQVIAGREVPQAPLREQIKVTMRATGDKSLYWCRNFAFITGVFGGSECLVEKYRGKHDVWNSVASGCITGAALQAKSGPQAAAVGCGGFAAFSLVIDTFM 136
BLAST of jgi.p|Trimin1|100891 vs. uniprot
Match: K0TBX0_THAOC (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBX0_THAOC) HSP 1 Score: 137 bits (346), Expect = 1.050e-35 Identity = 76/165 (46.06%), Postives = 99/165 (60.00%), Query Frame = 1 Query: 169 LLLKFLPTVKAWDMRTGGT--MPPQPPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQP-IQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMG 654
L ++ LP + W +PP L ESCG++ +G GG MGL+ G+FLGA+ DM P + +I G+EVPQAPL EQ R T +SL + FA + +F SEC++EK RGKHD+ NSV GCITG A K GP+ + GC G A FS VID+ MG
Sbjct: 79 LTMRGLPYPQPWARANASPAELPPNFDWLSESCGSKAAIGVIGGGAMGLVMGVFLGALTDMTPPVTIIEGKEVPQAPLKEQMRTTLRATADKSLYWCRQFAFITGVFGGSECLVEKYRGKHDVWNSVVSGCITGAAMQAKQGPQASAAGCGGFAVFSLVIDSFMG 243
BLAST of jgi.p|Trimin1|100891 vs. uniprot
Match: W7TL11_9STRA (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL11_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.430e-35 Identity = 71/140 (50.71%), Postives = 89/140 (63.57%), Query Frame = 1 Query: 238 PPALGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQP-IQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMG 654
PP E+C R + G G G+G++ G+FLGAMGDM P I +INGRE PQAP GEQ R AY T R A+NF + +A+F +CV+EK RGKHD N+V GC G A K GP+ A GC G AAFS +++ VMG
Sbjct: 66 PPNPQENCVGRSVFGAVAGAGLGVMMGIFLGAMGDMSPAIPIINGREAPQAPAGEQLRLAYRATFERCGHWARNFMALTALFSGVDCVVEKFRGKHDAYNAVISGCGVGAALSAKQGPQAACLGCAGFAAFSGIMEVVMG 205
BLAST of jgi.p|Trimin1|100891 vs. uniprot
Match: A0A1Z5K7I7_FISSO (Mitochondrial import inner membrane translocase subunit TIM22 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7I7_FISSO) HSP 1 Score: 135 bits (341), Expect = 8.890e-35 Identity = 79/162 (48.77%), Postives = 97/162 (59.88%), Query Frame = 1 Query: 178 KFLPTVKAWDMRTGGTMPPQPPA-LGESCGARLIMGTAGGFGMGLLFGMFLGAMGDMQP-IQVINGREVPQAPLGEQARAAYLGTKSRSLGMAKNFASFSAIFMASECVIEKMRGKHDMMNSVYGGCITGMAFGIKAGPKEAVGGCLGMAAFSAVIDAVMGH 657
+ LP W T PP + L SC ++ +G GG GMG L G+FLGA+ D P +QVI GR+VPQAPL EQ R T +S A NFA + +F SEC++EK RGK+D+ NSV GCITG A KAGP+ A GC G AAFS VID+ M H
Sbjct: 102 RSLPYPLPWKPVASPTEPPPDFSWLTGSCAGKVAIGVIGGAGMGALMGLFLGALSDTTPPVQVIGGRDVPQAPLREQMRVVMRATAEKSRYWAGNFAFITGVFAGSECLVEKYRGKNDLWNSVASGCITGAAMQAKAGPQSAALGCGGFAAFSLVIDSFMHH 263 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|100891 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13050 ID=mRNA_13050|Name=jgi.p|Trimin1|100891|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=877bp|location=Sequence derived from alignment at Contig_96:151630..158754- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AAGAAAGAGGAGCCGAGCCCGACAACGCCCCATACAGAGAGAGGCAGCACback to top protein sequence of jgi.p|Trimin1|100891 >Trimin1|100891|CE100890_55 ID=Trimin1|100891|CE100890_55|Name=jgi.p|Trimin1|100891|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp MHSGGSQGSESPDRLGRWTVGGGLSPSTEQELGGRPLLLKFLPTVKAWDMback to top mRNA from alignment at Contig_96:151630..158754- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13050 ID=mRNA_13050|Name=jgi.p|Trimin1|100891|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7125bp|location=Sequence derived from alignment at Contig_96:151630..158754- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_96:151630..158754- >mRNA_13050 ID=mRNA_13050|Name=jgi.p|Trimin1|100891|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=600bp|location=Sequence derived from alignment at Contig_96:151630..158754- (Tribonema minus UTEX_B_3156 )back to top |