mRNA_13035 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172798
Unique NamemRNA_13035
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: A0A836C704_9STRA (SAM-dependent MTase TRM10-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C704_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.470e-59
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
Query:    1 QSLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276
            QSLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR
Sbjct:    1 QSLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 92          
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: UPI00186B57C1 (tRNA methyltransferase 10 homolog B isoform X1 n=2 Tax=Trichosurus vulpecula TaxID=9337 RepID=UPI00186B57C1)

HSP 1 Score: 61.2 bits (147), Expect = 5.630e-9
Identity = 34/95 (35.79%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAE-----QGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276
            LA Q+   YG+   ++ A    WL   G       + E      G+ ++ ++  EE   +  P ES+VYL+PD+EHALE V+PG  Y++GG+VD 
Sbjct:  147 LAGQIRRLYGS---NKKAKKPFWLCLTGFTTDSPLYEECLRMNDGFSSYLIDTTEEDCLNLFPLESLVYLTPDSEHALEDVDPGKVYIIGGLVDE 238          
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: UPI001E1C1C95 (LOW QUALITY PROTEIN: tRNA methyltransferase 10 homolog B n=1 Tax=Desmodus rotundus TaxID=9430 RepID=UPI001E1C1C95)

HSP 1 Score: 60.5 bits (145), Expect = 1.090e-8
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 1
Query:    7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAE-----QGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276
            LA Q+   YG+   ++ A    W+   G AA    + E      G+ ++ ++  EE  F   P E++VYL+PD+EHALEGV+P   Y++GG+VD 
Sbjct:  163 LAGQIRRLYGS---NKKADRPFWICLTGFAADSPLYEECLRMNDGFCSYLLDITEEDCFSLFPLETLVYLTPDSEHALEGVDPNNVYILGGLVDE 254          
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: A0A2I4G0F2_JUGRE (tRNA (Guanine(9)-N1)-methyltransferase n=6 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4G0F2_JUGRE)

HSP 1 Score: 58.9 bits (141), Expect = 3.780e-8
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    4 SLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVERREESVFDCVP--RESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276
            SL +Q+ + Y A+     +P  LWLT C            G+D W +E+ + S  + +   +ES+VYL+ DAE  LE ++P   Y+VGG+VDR
Sbjct:  134 SLVQQIMYCY-AVNGRCSSPCHLWLTGCEGEMGSQLQRLPGFDKWIIEKEDRSYIEALEDQKESLVYLTADAETVLEELDPKKIYIVGGLVDR 225          
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: UPI000661CA8F (tRNA methyltransferase 10 homolog B isoform X2 n=1 Tax=Cavia porcellus TaxID=10141 RepID=UPI000661CA8F)

HSP 1 Score: 57.4 bits (137), Expect = 6.450e-8
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 1
Query:    7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAE-----QGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276
            LA Q+   YG+ + + D P   W+   G  AA   + E      G+ ++ ++  EE  F   P ES+VYL+PD+EHALE V+    YV+GG+VD 
Sbjct:   34 LAGQIRRLYGSNKRA-DRP--FWICLTGFTAASPLYEECLRMNDGFSSYQLDITEEDCFSLFPLESLVYLTPDSEHALEDVDLNKVYVLGGLVDE 125          
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: A0A3B3T5U1_9TELE (tRNA (guanine(9)-N(1))-methyltransferase n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3T5U1_9TELE)

HSP 1 Score: 58.2 bits (139), Expect = 7.180e-8
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQ---GWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276
            LA Q+G  YG+ R +   P  L+LT     +      ++   G+  +A++  E+S  D  P+ES++YL+PDAE ALE VEP   YV+GG+VD 
Sbjct:  154 LAGQIGRLYGSNRRARK-PFHLFLTDLKEDSLLYRECQRMNDGFLRYAIDITEDSFLDLFPQESVIYLTPDAEQALEYVEPDKVYVLGGLVDE 245          
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: UPI0009E3A998 (tRNA (guanine(9)-N1)-methyltransferase-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E3A998)

HSP 1 Score: 58.2 bits (139), Expect = 7.430e-8
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 1
Query:    1 QSLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVERREESVFDCVP--RESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276
            QSL+ Q+ + Y A+    + P  LWLT C            G+D W +E+   S  +     +E +VYL+ DAE ALE ++    Y++GG+VDR
Sbjct:  134 QSLSHQIMYCY-AVNGKCELPAHLWLTGCNGEIGNQLQRLPGYDKWIIEKENRSYIEAFQDHKEMLVYLTADAETALEELDSDRIYIIGGLVDR 226          
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: A0A6J2MGN4_9CHIR (tRNA (guanine(9)-N(1))-methyltransferase n=10 Tax=Phyllostomidae TaxID=9415 RepID=A0A6J2MGN4_9CHIR)

HSP 1 Score: 57.8 bits (138), Expect = 9.920e-8
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAE-----QGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276
            LA Q+   YG+   ++ A    W+   G A     + E      G+ ++ ++R EE  F   P E++VYL+PD+EHALE V+    Y++GG+VD 
Sbjct:  163 LAGQIRRLYGS---NKKADRPFWICLTGFATGSPLYEECLRMNDGFSSYLLDRTEEDCFSVFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDE 254          
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: UPI001E1D4958 (tRNA methyltransferase 10 homolog B n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1D4958)

HSP 1 Score: 57.4 bits (137), Expect = 1.260e-7
Identity = 32/95 (33.68%), Postives = 51/95 (53.68%), Query Frame = 1
Query:    7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAE-----QGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276
            LA Q+   YG+   ++ A    W+   G A     + E      G+ ++ ++  EE  F   P  ++VYL+PD+EHALE V+P   Y++GG+VD 
Sbjct:  131 LAGQIRRLYGS---NKKADRPFWICLAGFATDSPLYTECVRMNDGFSSYVLDLTEEDCFSLFPLSTLVYLTPDSEHALEDVDPNKVYILGGLVDE 222          
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: A0A3Q2XZC8_HIPCM (tRNA (guanine(9)-N(1))-methyltransferase n=4 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2XZC8_HIPCM)

HSP 1 Score: 57.4 bits (137), Expect = 1.280e-7
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    7 LARQVGHAYGALRASEDAPPALWLTSC---GAAAARAAFAEQGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276
            LA Q+   YG+ R +   P  L+LTS        A       G+  +++ER E+S  D  P ES+VYLSPDA+ ALE V+    YV+GG+VD 
Sbjct:  131 LAAQLRRLYGSNRRASK-PFRLFLTSLREDSRLLAECVRMNDGFLNYSLERTEQSCLDIFPAESVVYLSPDAQEALERVDGDTVYVLGGLVDE 222          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C704_9STRA2.470e-59100.00SAM-dependent MTase TRM10-type domain-containing p... [more]
UPI00186B57C15.630e-935.79tRNA methyltransferase 10 homolog B isoform X1 n=2... [more]
UPI001E1C1C951.090e-836.84LOW QUALITY PROTEIN: tRNA methyltransferase 10 hom... [more]
A0A2I4G0F2_JUGRE3.780e-836.56tRNA (Guanine(9)-N1)-methyltransferase n=6 Tax=Jug... [more]
UPI000661CA8F6.450e-837.89tRNA methyltransferase 10 homolog B isoform X2 n=1... [more]
A0A3B3T5U1_9TELE7.180e-839.78tRNA (guanine(9)-N(1))-methyltransferase n=2 Tax=P... [more]
UPI0009E3A9987.430e-835.11tRNA (guanine(9)-N1)-methyltransferase-like n=1 Ta... [more]
A0A6J2MGN4_9CHIR9.920e-834.74tRNA (guanine(9)-N(1))-methyltransferase n=10 Tax=... [more]
UPI001E1D49581.260e-733.68tRNA methyltransferase 10 homolog B n=1 Tax=Echino... [more]
A0A3Q2XZC8_HIPCM1.280e-740.86tRNA (guanine(9)-N(1))-methyltransferase n=4 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:50564..50842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172798|e_gw1.96.20.1
BRITEko00000,ko01000,ko03016
KEGG koko:K15445
EC2.1.1.221
DescriptiontRNA (guanine(9)-N(1))-methyltransferase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2967@1|root,KOG2967@2759|Eukaryota
Evalue1.07e-11
Seed ortholog227086.JGI_V11_48731
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA methyltransferase TRMD/TRM10-type domain
Ec32 orthologEc-06_000800.1
TranscriptId173120
TrackFilteredModels1
ProteinId172798
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172798gene_13035Tribonema minus UTEX_B_3156 geneContig_96 50564..50842 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13035_1exon_13035_1Tribonema minus UTEX_B_3156 exonContig_96 50564..50842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13035CDS_13035Tribonema minus UTEX_B_3156 CDSContig_96 50564..50842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172798Trimin1|172798|e_gw1.96.20.1Tribonema minus UTEX_B_3156 polypeptideContig_96 50564..50842 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13035 ID=mRNA_13035|Name=jgi.p|Trimin1|172798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_96:50564..50842+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGTCGCTGGCGCGCCAGGTCGGCCACGCGTACGGCGCCCTTCGCGCGAG
CGAAGACGCCCCCCCCGCGTTGTGGCTCACGTCGTGCGGCGCCGCGGCGG
CGCGCGCCGCGTTCGCGGAGCAGGGCTGGGACGCATGGGCTGTGGAGAGG
AGGGAGGAGAGCGTGTTTGACTGCGTGCCGCGCGAGAGCATTGTGTATCT
GAGCCCTGACGCGGAGCACGCGCTGGAGGGGGTGGAACCGGGGGTCACGT
ACGTTGTGGGGGGCATCGTGGACAGGTAG
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protein sequence of jgi.p|Trimin1|172798

>Trimin1|172798|e_gw1.96.20.1 ID=Trimin1|172798|e_gw1.96.20.1|Name=jgi.p|Trimin1|172798|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=93bp
QSLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVER
REESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR*
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mRNA from alignment at Contig_96:50564..50842+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13035 ID=mRNA_13035|Name=jgi.p|Trimin1|172798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_96:50564..50842+ (Tribonema minus UTEX_B_3156 )
CAGTCGCTGGCGCGCCAGGTCGGCCACGCGTACGGCGCCCTTCGCGCGAG CGAAGACGCCCCCCCCGCGTTGTGGCTCACGTCGTGCGGCGCCGCGGCGG CGCGCGCCGCGTTCGCGGAGCAGGGCTGGGACGCATGGGCTGTGGAGAGG AGGGAGGAGAGCGTGTTTGACTGCGTGCCGCGCGAGAGCATTGTGTATCT GAGCCCTGACGCGGAGCACGCGCTGGAGGGGGTGGAACCGGGGGTCACGT ACGTTGTGGGGGGCATCGTGGACAGGTAG
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Coding sequence (CDS) from alignment at Contig_96:50564..50842+

>mRNA_13035 ID=mRNA_13035|Name=jgi.p|Trimin1|172798|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=279bp|location=Sequence derived from alignment at Contig_96:50564..50842+ (Tribonema minus UTEX_B_3156 )
CAGTCGCTGGCGCGCCAGGTCGGCCACGCGTACGGCGCCCTTCGCGCGAG
CGAAGACGCCCCCCCCGCGTTGTGGCTCACGTCGTGCGGCGCCGCGGCGG
CGCGCGCCGCGTTCGCGGAGCAGGGCTGGGACGCATGGGCTGTGGAGAGG
AGGGAGGAGAGCGTGTTTGACTGCGTGCCGCGCGAGAGCATTGTGTATCT
GAGCCCTGACGCGGAGCACGCGCTGGAGGGGGTGGAACCGGGGGTCACGT
ACGTTGTGGGGGGCATCGTGGACAGGTAG
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