mRNA_13035 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: A0A836C704_9STRA (SAM-dependent MTase TRM10-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C704_9STRA) HSP 1 Score: 185 bits (469), Expect = 2.470e-59 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 Query: 1 QSLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276 QSLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR Sbjct: 1 QSLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 92
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: UPI00186B57C1 (tRNA methyltransferase 10 homolog B isoform X1 n=2 Tax=Trichosurus vulpecula TaxID=9337 RepID=UPI00186B57C1) HSP 1 Score: 61.2 bits (147), Expect = 5.630e-9 Identity = 34/95 (35.79%), Postives = 52/95 (54.74%), Query Frame = 1 Query: 7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAE-----QGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276 LA Q+ YG+ ++ A WL G + E G+ ++ ++ EE + P ES+VYL+PD+EHALE V+PG Y++GG+VD Sbjct: 147 LAGQIRRLYGS---NKKAKKPFWLCLTGFTTDSPLYEECLRMNDGFSSYLIDTTEEDCLNLFPLESLVYLTPDSEHALEDVDPGKVYIIGGLVDE 238
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: UPI001E1C1C95 (LOW QUALITY PROTEIN: tRNA methyltransferase 10 homolog B n=1 Tax=Desmodus rotundus TaxID=9430 RepID=UPI001E1C1C95) HSP 1 Score: 60.5 bits (145), Expect = 1.090e-8 Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 1 Query: 7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAE-----QGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276 LA Q+ YG+ ++ A W+ G AA + E G+ ++ ++ EE F P E++VYL+PD+EHALEGV+P Y++GG+VD Sbjct: 163 LAGQIRRLYGS---NKKADRPFWICLTGFAADSPLYEECLRMNDGFCSYLLDITEEDCFSLFPLETLVYLTPDSEHALEGVDPNNVYILGGLVDE 254
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: A0A2I4G0F2_JUGRE (tRNA (Guanine(9)-N1)-methyltransferase n=6 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4G0F2_JUGRE) HSP 1 Score: 58.9 bits (141), Expect = 3.780e-8 Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 1 Query: 4 SLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVERREESVFDCVP--RESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276 SL +Q+ + Y A+ +P LWLT C G+D W +E+ + S + + +ES+VYL+ DAE LE ++P Y+VGG+VDR Sbjct: 134 SLVQQIMYCY-AVNGRCSSPCHLWLTGCEGEMGSQLQRLPGFDKWIIEKEDRSYIEALEDQKESLVYLTADAETVLEELDPKKIYIVGGLVDR 225
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: UPI000661CA8F (tRNA methyltransferase 10 homolog B isoform X2 n=1 Tax=Cavia porcellus TaxID=10141 RepID=UPI000661CA8F) HSP 1 Score: 57.4 bits (137), Expect = 6.450e-8 Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 1 Query: 7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAE-----QGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276 LA Q+ YG+ + + D P W+ G AA + E G+ ++ ++ EE F P ES+VYL+PD+EHALE V+ YV+GG+VD Sbjct: 34 LAGQIRRLYGSNKRA-DRP--FWICLTGFTAASPLYEECLRMNDGFSSYQLDITEEDCFSLFPLESLVYLTPDSEHALEDVDLNKVYVLGGLVDE 125
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: A0A3B3T5U1_9TELE (tRNA (guanine(9)-N(1))-methyltransferase n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3T5U1_9TELE) HSP 1 Score: 58.2 bits (139), Expect = 7.180e-8 Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1 Query: 7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQ---GWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276 LA Q+G YG+ R + P L+LT + ++ G+ +A++ E+S D P+ES++YL+PDAE ALE VEP YV+GG+VD Sbjct: 154 LAGQIGRLYGSNRRARK-PFHLFLTDLKEDSLLYRECQRMNDGFLRYAIDITEDSFLDLFPQESVIYLTPDAEQALEYVEPDKVYVLGGLVDE 245
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: UPI0009E3A998 (tRNA (guanine(9)-N1)-methyltransferase-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E3A998) HSP 1 Score: 58.2 bits (139), Expect = 7.430e-8 Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 1 Query: 1 QSLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVERREESVFDCVP--RESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276 QSL+ Q+ + Y A+ + P LWLT C G+D W +E+ S + +E +VYL+ DAE ALE ++ Y++GG+VDR Sbjct: 134 QSLSHQIMYCY-AVNGKCELPAHLWLTGCNGEIGNQLQRLPGYDKWIIEKENRSYIEAFQDHKEMLVYLTADAETALEELDSDRIYIIGGLVDR 226
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: A0A6J2MGN4_9CHIR (tRNA (guanine(9)-N(1))-methyltransferase n=10 Tax=Phyllostomidae TaxID=9415 RepID=A0A6J2MGN4_9CHIR) HSP 1 Score: 57.8 bits (138), Expect = 9.920e-8 Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 1 Query: 7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAE-----QGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276 LA Q+ YG+ ++ A W+ G A + E G+ ++ ++R EE F P E++VYL+PD+EHALE V+ Y++GG+VD Sbjct: 163 LAGQIRRLYGS---NKKADRPFWICLTGFATGSPLYEECLRMNDGFSSYLLDRTEEDCFSVFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDE 254
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: UPI001E1D4958 (tRNA methyltransferase 10 homolog B n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1D4958) HSP 1 Score: 57.4 bits (137), Expect = 1.260e-7 Identity = 32/95 (33.68%), Postives = 51/95 (53.68%), Query Frame = 1 Query: 7 LARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAE-----QGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276 LA Q+ YG+ ++ A W+ G A + E G+ ++ ++ EE F P ++VYL+PD+EHALE V+P Y++GG+VD Sbjct: 131 LAGQIRRLYGS---NKKADRPFWICLAGFATDSPLYTECVRMNDGFSSYVLDLTEEDCFSLFPLSTLVYLTPDSEHALEDVDPNKVYILGGLVDE 222
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Match: A0A3Q2XZC8_HIPCM (tRNA (guanine(9)-N(1))-methyltransferase n=4 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2XZC8_HIPCM) HSP 1 Score: 57.4 bits (137), Expect = 1.280e-7 Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 1 Query: 7 LARQVGHAYGALRASEDAPPALWLTSC---GAAAARAAFAEQGWDAWAVERREESVFDCVPRESIVYLSPDAEHALEGVEPGVTYVVGGIVDR 276 LA Q+ YG+ R + P L+LTS A G+ +++ER E+S D P ES+VYLSPDA+ ALE V+ YV+GG+VD Sbjct: 131 LAAQLRRLYGSNRRASK-PFRLFLTSLREDSRLLAECVRMNDGFLNYSLERTEQSCLDIFPAESVVYLSPDAQEALERVDGDTVYVLGGLVDE 222 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172798 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13035 ID=mRNA_13035|Name=jgi.p|Trimin1|172798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_96:50564..50842+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGTCGCTGGCGCGCCAGGTCGGCCACGCGTACGGCGCCCTTCGCGCGAGback to top protein sequence of jgi.p|Trimin1|172798 >Trimin1|172798|e_gw1.96.20.1 ID=Trimin1|172798|e_gw1.96.20.1|Name=jgi.p|Trimin1|172798|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=93bp QSLARQVGHAYGALRASEDAPPALWLTSCGAAAARAAFAEQGWDAWAVERback to top mRNA from alignment at Contig_96:50564..50842+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13035 ID=mRNA_13035|Name=jgi.p|Trimin1|172798|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_96:50564..50842+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_96:50564..50842+ >mRNA_13035 ID=mRNA_13035|Name=jgi.p|Trimin1|172798|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=279bp|location=Sequence derived from alignment at Contig_96:50564..50842+ (Tribonema minus UTEX_B_3156 )back to top |