mRNA_13029 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|142783
Unique NamemRNA_13029
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A835ZH03_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH03_9STRA)

HSP 1 Score: 556 bits (1432), Expect = 2.990e-200
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1
Query:    1 ISRYRNAQPQEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKGDIAVPYGLSASSFGYVMCWLCGG 819
            ISRYRNAQPQEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKGDIAVPYGLSASSFGYVMCWLCGG
Sbjct:    1 ISRYRNAQPQEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKGDIAVPYGLSASSFGYVMCWLCGG 273          
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S4A5H2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5H2_9STRA)

HSP 1 Score: 150 bits (379), Expect = 8.970e-39
Identity = 107/295 (36.27%), Postives = 147/295 (49.83%), Query Frame = 1
Query:    1 ISRYRNAQPQEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLD----NVSAEELARR----EPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKV--SSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRY--LLSTRD-------LVAFWLTVHQHMLNDLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKG---DIAVPYGLSASSFGYVMCWLCGG 819
            ++R R   P     VFVGGLQRS TT LA  ++ LP  S  S      N+  EE   R      W+  G T  Y  +V ++GGLEGKF Q  YPY  ++R+    G  V A+ R     ++ S Q   +L +QW PYWN +  VL+EKTPEN +   +L+  F   +  F+FVLRHPL WAL + KW+ +R  +   L  RD        +  W+ +   ML D+ +L  A IVHAEA +              +  ++P  L     G    +A   GL+ S+  YV CWL GG
Sbjct:   74 VTRLRPRDPNR-LLVFVGGLQRSGTTALASALEALPDASGQSFRWLFANLRKEEAEARVDALRRWR--GVTRRYLDDVIKSGGLEGKFAQDVYPYAYMLRDW---GDSVHAVDRLSLDGAEASPQKAVELWRQWYPYWNQSSAVLVEKTPENFVRGLFLEALFPQ-NARFVFVLRHPLAWALTIEKWLDNRWNFKKTLYLRDPDDGIDRRIEMWIQLVDKMLADVSSLKQAAIVHAEACSL-------------RPDVIPKSLERIVDGRRVSLAPFKGLARSNLAYVACWLEGG 348          
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S2WKR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKR9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.310e-36
Identity = 80/210 (38.10%), Postives = 122/210 (58.10%), Query Frame = 1
Query:   37 KFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAI-RRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLN-DLDTLSNAQIVHAEAL 660
            +++FVGGLQR+ TT LA+ I R    +  SL+ +  +      PW + GF   YF +V RTGGLEGKFVQT YP+  ++R+  +    V ++ +   +S +S +   +L ++W  +W  +  + LEKTPENIL S  LQ   G+  TSF+F  RHPL W+LAV K+V      L    + +   L+V +H ++ DL  L +A +V+ E +
Sbjct:   11 QYIFVGGLQRTGTTYLAETIGRTAGAALQSLEWMGEQNYLEYSPWSIQGFDRRYFESVVRTGGLEGKFVQTVYPFPYVLRDFGERKQPVHSLFQNATASFVSRENGLKLIEEWGLWWPTSAHLRLEKTPENILMSPALQALLGAERTSFVFTFRHPLAWSLAVSKFVRPSMAQLYFVENRLRLALSVMRHFVDHDLPGLRSATVVYFETM 220          
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S3JQB0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQB0_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.940e-33
Identity = 104/276 (37.68%), Postives = 142/276 (51.45%), Query Frame = 1
Query:   31 EHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAE-ELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQL-SAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGS----TDTSFIFVLRHPLTWALAVRKWVSDRHR--YLLSTRDL---VAFWLTVHQHMLN-DLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKGDIAV-PY-GLSASSFGYVMCWLCG 816
            E   VFVGGLQRS TT  A L++ +    S S   V  E  +      KL G    Y  +   +GGLEGKFVQ  YPYH L++E    G      +  +SS+L    T  +L QQW  +WN +  VL+EKTPENIL S +LQ AF +       +F+FVLRHPL W+L + KW+ ++    +  S R L   V  WL V   ML+ D  TLS+  I HAE        + K +  +   RI    +P++ K   +  P+ G   ++  Y+ CWL G
Sbjct:   63 ERTIVFVGGLQRSGTTTAATLLENID--ESWSKQQVRQELGMIVNRIAKLRGMNPSYVKDTLSSGGLEGKFVQNVYPYHYLLKEWGSGG-NTAIDKFSLSSELVQPDTGNRLWQQWHSFWNESATVLIEKTPENILMSQFLQSAFQNITIPNKVAFVFVLRHPLAWSLVIDKWLRNKWNRDFTKSLRPLQARVQMWLDVTTTMLDRDAPTLSSIAIFHAEV----ADLYPKKLLHLILTRIR---IPTSFKQVPSTNPFSGYILANLAYLACWLNG 328          
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S2NFR8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NFR8_9EUKA)

HSP 1 Score: 120 bits (300), Expect = 6.480e-30
Identity = 66/140 (47.14%), Postives = 85/140 (60.71%), Query Frame = 1
Query:   28 QEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYL 447
            Q+H F+F+GGLQRS TT L  L+   P VS LS DNV   E  R++PW L   T+ YF  V R+GG+EGKFVQ+ YPY NL R+  +    +  +    SS  S Q   QL ++W  +W+ T P LLEKTPE+ L   YL
Sbjct:   40 QKHSFLFMGGLQRSGTTWLEGLVTS-PSVSGLSFDNVDLGEYQRQQPWLLQNHTQAYFELVVRSGGVEGKFVQSVYPYVNLFRDVGKNSRPLNTLIVN-SSAASPQAGTQLFKEWALFWDTTKPFLLEKTPEHFLMGPYL 177          
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S3TVW1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TVW1_EMIHU)

HSP 1 Score: 122 bits (306), Expect = 1.500e-28
Identity = 99/285 (34.74%), Postives = 134/285 (47.02%), Query Frame = 1
Query:   37 KFVFVGGLQRSATTLLADLIQ-RLPCVSSLSLDNVSAEELARREPWKL-------NGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWV------------SDRHRY-----LLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKGDIAVPYGLSASSFGYVMCWLCG 816
            + +FVGGLQRS T+ LA L+   +  VS L+ +  SAE L R  PWK              YF  V  TGG EGK +Q+ YPY  L+ +     +R    +    S L +  R  L +QW  +W     VLL+KTPEN+L + +LQ  FG   TSFIFVLRHPL+W+LA  KW             S  H       L     L+A W   H+ M   L TL +A ++  E       +W   +T +  A  L P     A+ + A       +S  YV C++ G
Sbjct:   20 RLLFVGGLQRSGTSSLAALLGGTIDGVSGLAFELGSAEHL-REAPWKSLVDVHTGRWMKYAYFREVVSTGGAEGKLLQSVYPYRYLLHDARTAPLRALLSQPTELSPLRS-ARQYLWEQWRRFWTPAL-VLLDKTPENLLMAPFLQATFGPRATSFIFVLRHPLSWSLAASKWACPWGAGNVSRASSTGHTRRAAPPLECVDRLMAVWRVAHERMATRLPTLRSATLLRTEV-----DSWIAALTPLLTAVGLRPPNGRLAEWE-ATRRAFLRASHQYVFCYMRG 295          
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S4C5P6_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C5P6_CHRCT)

HSP 1 Score: 110 bits (276), Expect = 9.990e-25
Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = 1
Query:   43 VFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWK------LNGFTE-DYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQT-RAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKW 531
            +FVGGLQRS T++LA L+ RLP  + L  +  S  ++    PWK        G+ +  YF  V  TGG EGK +Q+ +PY   + +    G+R         S L A+  R  L  QW  +W    P+ ++K+PEN+L + +LQ +FG++  SF+FVLRHPL+W+LA  KW
Sbjct:  179 LFVGGLQRSGTSMLAGLLTRLPGAAGLHFNASSLADM-EEAPWKSLSDVHTGGWMKWAYFREVVATGGAEGKLLQSVFPYRYTLHDAKFAGLRALLSAPSSLSPLRARAARRALWSQWRRFWRPA-PLFVDKSPENMLMAPFLQASFGAS-ASFLFVLRHPLSWSLAAAKW 346          
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: UPI001C89452F (sulfotransferase n=1 Tax=Microbacterium sp. G2-8 TaxID=2842454 RepID=UPI001C89452F)

HSP 1 Score: 107 bits (266), Expect = 9.130e-24
Identity = 72/209 (34.45%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   31 EHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWV-SDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAE 654
            +H+F FVGG+ RS TTLLA  I R P VS L+  NV  +E               +   V+R G   G   + A   H  + E                S  +A   A L   W+PYW+L+  +L+EKTP NI  + YLQ  F    +SF+ + RHP+T ALAV KW  S + +  L    L+  WL  H+ +  DL  L +A ++  E
Sbjct:    9 DHRFTFVGGMHRSGTTLLASAISRSPGVSGLTNTNVVMDE-------------GQFLQTVYRPGYEMGGVTRWALDKHAYLTE----------------SDATATDLAALWSSWSPYWDLSAEMLVEKTPLNITKTRYLQAVF--PRSSFVIITRHPITQALAVMKWAPSQKEKLGLRFDLLIENWLRAHEALQRDLPQLEDATVIRYE 186          
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A3M1JIW2_9BACT (Sulfotransferase n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A3M1JIW2_9BACT)

HSP 1 Score: 101 bits (252), Expect = 5.020e-22
Identity = 65/207 (31.40%), Postives = 98/207 (47.34%), Query Frame = 1
Query:   34 HKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAE 654
            HKFVF+GGL RS T+L    ++  P +S  S   V  +E                           G+F+Q+ YP         + G   +    + S  +SA+ R +L Q+W+ +WNL  PVL+EK+P NI+ + +LQ  F   + +FI ++RHP+  ALA +KW         S R L+A W+  H  ML D   L    ++  E
Sbjct:    5 HKFVFIGGLHRSGTSLFFKSLKTHPDISGFSNTGVDEDE---------------------------GQFLQSVYPIAKRYGGPGKFGFAEDMHLTEKSPLVSAENRTKLFQEWSKWWNLNKPVLVEKSPPNIIKTRFLQALF--PEAAFILLIRHPIAVALATKKWSYT------SLRSLIAHWVRCHSLMLKDRVHLKQVMVLRYE 176          
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7Z9BIY1_9CYAN (Uncharacterized protein n=2 Tax=Planktothrix TaxID=54304 RepID=A0A7Z9BIY1_9CYAN)

HSP 1 Score: 95.1 bits (235), Expect = 1.130e-19
Identity = 64/209 (30.62%), Postives = 102/209 (48.80%), Query Frame = 1
Query:   34 HKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAEAL 660
            H++VF+GGL RS TTLLA+ ++  P +S                 +K  G +ED           EG+F+Q+ YP   +     + G    +   + S   S++   ++ Q+W+ YW+L  P+LLEK+P N+L + +LQ  F   ++ FI +LRHP+  A A +KW    H  L S   L+  WL  ++    D   L    ++  E L
Sbjct:    4 HQYVFIGGLHRSGTTLLANCLREHPKISG----------------FKDTGVSED-----------EGQFLQSVYPPAMVYGGPGRFGFNSGSFLNETSDLASSENAQKMFQEWSHYWDLQRPILLEKSPPNLLKTRFLQALF--PNSFFIIILRHPIPVAYATKKW---SHTQLYS---LIKHWLVCYEQFERDRPYLKRLLVLKYEDL 177          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZH03_9STRA2.990e-200100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4A5H2_9STRA8.970e-3936.27Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2WKR9_9STRA1.310e-3638.10Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3JQB0_9STRA1.940e-3337.68Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2NFR8_9EUKA6.480e-3047.14Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S3TVW1_EMIHU1.500e-2834.74Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S4C5P6_CHRCT9.990e-2539.18Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
UPI001C89452F9.130e-2434.45sulfotransferase n=1 Tax=Microbacterium sp. G2-8 T... [more]
A0A3M1JIW2_9BACT5.020e-2231.40Sulfotransferase n=1 Tax=Candidatus Marinimicrobia... [more]
A0A7Z9BIY1_9CYAN1.130e-1930.62Uncharacterized protein n=2 Tax=Planktothrix TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_109contigContig_109:523525..524343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|142783|gw1.109.47.1
DescriptionSulfotransferase family
COG categoryS
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,2H5WR@201174|Actinobacteria
Evalue1.75e-17
Seed ortholog926564.KI911686_gene5314
Hectar predicted targeting categoryother localisation
TranscriptId143105
TrackFilteredModels1
ProteinId142783
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142783gene_13029Tribonema minus UTEX_B_3156 geneContig_109 523525..524343 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13029_1exon_13029_1Tribonema minus UTEX_B_3156 exonContig_109 523525..524343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13029CDS_13029Tribonema minus UTEX_B_3156 CDSContig_109 523525..524343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142783Trimin1|142783|gw1.109.47.1Tribonema minus UTEX_B_3156 polypeptideContig_109 523525..524343 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13029 ID=mRNA_13029|Name=jgi.p|Trimin1|142783|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_109:523525..524343+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCTCACGGTACAGAAACGCGCAGCCCCAGGAGCACAAGTTTGTGTTTGT
GGGAGGGCTGCAGCGCTCAGCCACAACGCTGCTGGCGGATCTCATACAGC
GCCTGCCGTGTGTCAGCAGCCTGAGCCTGGACAACGTGTCCGCGGAGGAG
CTGGCGCGGCGCGAGCCCTGGAAGCTCAACGGCTTCACGGAAGACTACTT
CCTCAACGTGCACCGCACGGGTGGGCTGGAGGGCAAGTTTGTGCAGACGG
CGTACCCGTACCACAACCTCATCCGCGAGACCAATCAGGAGGGCATTCGG
GTGGAGGCGATTCGGCGCAAGGTGTCGTCGCAGCTCAGCGCGCAGACGCG
CGCGCAGCTGCGCCAGCAGTGGACGCCGTACTGGAACCTGACGCACCCCG
TGCTGCTGGAGAAGACGCCGGAGAACATTCTCTGGTCGTCGTACCTGCAG
GGCGCGTTCGGCTCCACGGACACGTCGTTCATCTTTGTGCTGCGCCACCC
GCTGACGTGGGCGCTGGCGGTGCGCAAGTGGGTGAGCGACAGGCACCGCT
ACCTGCTGAGCACGCGCGACCTCGTGGCGTTCTGGCTCACGGTCCACCAG
CACATGCTCAACGACCTGGACACGCTGTCCAACGCGCAGATCGTGCACGC
GGAGGCGCTCGCGTCGAGCACTGCCACCTGGCGCAAGCTCGTGACGTGGA
TGGAGAAGGCGCGCATACTGCCGCCGGACCTGCCGAGCGCCGCCAAGGGC
GACATCGCCGTGCCCTACGGCCTCAGCGCGAGCAGCTTTGGCTACGTCAT
GTGCTGGCTGTGCGGAGGC
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protein sequence of jgi.p|Trimin1|142783

>Trimin1|142783|gw1.109.47.1 ID=Trimin1|142783|gw1.109.47.1|Name=jgi.p|Trimin1|142783|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp
ISRYRNAQPQEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEE
LARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIR
VEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQ
GAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQ
HMLNDLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKG
DIAVPYGLSASSFGYVMCWLCGG
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mRNA from alignment at Contig_109:523525..524343+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13029 ID=mRNA_13029|Name=jgi.p|Trimin1|142783|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_109:523525..524343+ (Tribonema minus UTEX_B_3156 )
ATCTCACGGTACAGAAACGCGCAGCCCCAGGAGCACAAGTTTGTGTTTGT GGGAGGGCTGCAGCGCTCAGCCACAACGCTGCTGGCGGATCTCATACAGC GCCTGCCGTGTGTCAGCAGCCTGAGCCTGGACAACGTGTCCGCGGAGGAG CTGGCGCGGCGCGAGCCCTGGAAGCTCAACGGCTTCACGGAAGACTACTT CCTCAACGTGCACCGCACGGGTGGGCTGGAGGGCAAGTTTGTGCAGACGG CGTACCCGTACCACAACCTCATCCGCGAGACCAATCAGGAGGGCATTCGG GTGGAGGCGATTCGGCGCAAGGTGTCGTCGCAGCTCAGCGCGCAGACGCG CGCGCAGCTGCGCCAGCAGTGGACGCCGTACTGGAACCTGACGCACCCCG TGCTGCTGGAGAAGACGCCGGAGAACATTCTCTGGTCGTCGTACCTGCAG GGCGCGTTCGGCTCCACGGACACGTCGTTCATCTTTGTGCTGCGCCACCC GCTGACGTGGGCGCTGGCGGTGCGCAAGTGGGTGAGCGACAGGCACCGCT ACCTGCTGAGCACGCGCGACCTCGTGGCGTTCTGGCTCACGGTCCACCAG CACATGCTCAACGACCTGGACACGCTGTCCAACGCGCAGATCGTGCACGC GGAGGCGCTCGCGTCGAGCACTGCCACCTGGCGCAAGCTCGTGACGTGGA TGGAGAAGGCGCGCATACTGCCGCCGGACCTGCCGAGCGCCGCCAAGGGC GACATCGCCGTGCCCTACGGCCTCAGCGCGAGCAGCTTTGGCTACGTCAT GTGCTGGCTGTGCGGAGGC
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Coding sequence (CDS) from alignment at Contig_109:523525..524343+

>mRNA_13029 ID=mRNA_13029|Name=jgi.p|Trimin1|142783|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_109:523525..524343+ (Tribonema minus UTEX_B_3156 )
ATCTCACGGTACAGAAACGCGCAGCCCCAGGAGCACAAGTTTGTGTTTGT
GGGAGGGCTGCAGCGCTCAGCCACAACGCTGCTGGCGGATCTCATACAGC
GCCTGCCGTGTGTCAGCAGCCTGAGCCTGGACAACGTGTCCGCGGAGGAG
CTGGCGCGGCGCGAGCCCTGGAAGCTCAACGGCTTCACGGAAGACTACTT
CCTCAACGTGCACCGCACGGGTGGGCTGGAGGGCAAGTTTGTGCAGACGG
CGTACCCGTACCACAACCTCATCCGCGAGACCAATCAGGAGGGCATTCGG
GTGGAGGCGATTCGGCGCAAGGTGTCGTCGCAGCTCAGCGCGCAGACGCG
CGCGCAGCTGCGCCAGCAGTGGACGCCGTACTGGAACCTGACGCACCCCG
TGCTGCTGGAGAAGACGCCGGAGAACATTCTCTGGTCGTCGTACCTGCAG
GGCGCGTTCGGCTCCACGGACACGTCGTTCATCTTTGTGCTGCGCCACCC
GCTGACGTGGGCGCTGGCGGTGCGCAAGTGGGTGAGCGACAGGCACCGCT
ACCTGCTGAGCACGCGCGACCTCGTGGCGTTCTGGCTCACGGTCCACCAG
CACATGCTCAACGACCTGGACACGCTGTCCAACGCGCAGATCGTGCACGC
GGAGGCGCTCGCGTCGAGCACTGCCACCTGGCGCAAGCTCGTGACGTGGA
TGGAGAAGGCGCGCATACTGCCGCCGGACCTGCCGAGCGCCGCCAAGGGC
GACATCGCCGTGCCCTACGGCCTCAGCGCGAGCAGCTTTGGCTACGTCAT
GTGCTGGCTGTGCGGAGGC
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