mRNA_13029 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A835ZH03_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH03_9STRA) HSP 1 Score: 556 bits (1432), Expect = 2.990e-200 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1
Query: 1 ISRYRNAQPQEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKGDIAVPYGLSASSFGYVMCWLCGG 819
ISRYRNAQPQEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKGDIAVPYGLSASSFGYVMCWLCGG
Sbjct: 1 ISRYRNAQPQEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKGDIAVPYGLSASSFGYVMCWLCGG 273
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S4A5H2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5H2_9STRA) HSP 1 Score: 150 bits (379), Expect = 8.970e-39 Identity = 107/295 (36.27%), Postives = 147/295 (49.83%), Query Frame = 1
Query: 1 ISRYRNAQPQEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLD----NVSAEELARR----EPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKV--SSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRY--LLSTRD-------LVAFWLTVHQHMLNDLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKG---DIAVPYGLSASSFGYVMCWLCGG 819
++R R P VFVGGLQRS TT LA ++ LP S S N+ EE R W+ G T Y +V ++GGLEGKF Q YPY ++R+ G V A+ R ++ S Q +L +QW PYWN + VL+EKTPEN + +L+ F + F+FVLRHPL WAL + KW+ +R + L RD + W+ + ML D+ +L A IVHAEA + + ++P L G +A GL+ S+ YV CWL GG
Sbjct: 74 VTRLRPRDPNR-LLVFVGGLQRSGTTALASALEALPDASGQSFRWLFANLRKEEAEARVDALRRWR--GVTRRYLDDVIKSGGLEGKFAQDVYPYAYMLRDW---GDSVHAVDRLSLDGAEASPQKAVELWRQWYPYWNQSSAVLVEKTPENFVRGLFLEALFPQ-NARFVFVLRHPLAWALTIEKWLDNRWNFKKTLYLRDPDDGIDRRIEMWIQLVDKMLADVSSLKQAAIVHAEACSL-------------RPDVIPKSLERIVDGRRVSLAPFKGLARSNLAYVACWLEGG 348
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S2WKR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKR9_9STRA) HSP 1 Score: 142 bits (358), Expect = 1.310e-36 Identity = 80/210 (38.10%), Postives = 122/210 (58.10%), Query Frame = 1
Query: 37 KFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAI-RRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLN-DLDTLSNAQIVHAEAL 660
+++FVGGLQR+ TT LA+ I R + SL+ + + PW + GF YF +V RTGGLEGKFVQT YP+ ++R+ + V ++ + +S +S + +L ++W +W + + LEKTPENIL S LQ G+ TSF+F RHPL W+LAV K+V L + + L+V +H ++ DL L +A +V+ E +
Sbjct: 11 QYIFVGGLQRTGTTYLAETIGRTAGAALQSLEWMGEQNYLEYSPWSIQGFDRRYFESVVRTGGLEGKFVQTVYPFPYVLRDFGERKQPVHSLFQNATASFVSRENGLKLIEEWGLWWPTSAHLRLEKTPENILMSPALQALLGAERTSFVFTFRHPLAWSLAVSKFVRPSMAQLYFVENRLRLALSVMRHFVDHDLPGLRSATVVYFETM 220
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S3JQB0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQB0_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.940e-33 Identity = 104/276 (37.68%), Postives = 142/276 (51.45%), Query Frame = 1
Query: 31 EHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAE-ELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQL-SAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGS----TDTSFIFVLRHPLTWALAVRKWVSDRHR--YLLSTRDL---VAFWLTVHQHMLN-DLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKGDIAV-PY-GLSASSFGYVMCWLCG 816
E VFVGGLQRS TT A L++ + S S V E + KL G Y + +GGLEGKFVQ YPYH L++E G + +SS+L T +L QQW +WN + VL+EKTPENIL S +LQ AF + +F+FVLRHPL W+L + KW+ ++ + S R L V WL V ML+ D TLS+ I HAE + K + + RI +P++ K + P+ G ++ Y+ CWL G
Sbjct: 63 ERTIVFVGGLQRSGTTTAATLLENID--ESWSKQQVRQELGMIVNRIAKLRGMNPSYVKDTLSSGGLEGKFVQNVYPYHYLLKEWGSGG-NTAIDKFSLSSELVQPDTGNRLWQQWHSFWNESATVLIEKTPENILMSQFLQSAFQNITIPNKVAFVFVLRHPLAWSLVIDKWLRNKWNRDFTKSLRPLQARVQMWLDVTTTMLDRDAPTLSSIAIFHAEV----ADLYPKKLLHLILTRIR---IPTSFKQVPSTNPFSGYILANLAYLACWLNG 328
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S2NFR8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NFR8_9EUKA) HSP 1 Score: 120 bits (300), Expect = 6.480e-30 Identity = 66/140 (47.14%), Postives = 85/140 (60.71%), Query Frame = 1
Query: 28 QEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYL 447
Q+H F+F+GGLQRS TT L L+ P VS LS DNV E R++PW L T+ YF V R+GG+EGKFVQ+ YPY NL R+ + + + SS S Q QL ++W +W+ T P LLEKTPE+ L YL
Sbjct: 40 QKHSFLFMGGLQRSGTTWLEGLVTS-PSVSGLSFDNVDLGEYQRQQPWLLQNHTQAYFELVVRSGGVEGKFVQSVYPYVNLFRDVGKNSRPLNTLIVN-SSAASPQAGTQLFKEWALFWDTTKPFLLEKTPEHFLMGPYL 177
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S3TVW1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TVW1_EMIHU) HSP 1 Score: 122 bits (306), Expect = 1.500e-28 Identity = 99/285 (34.74%), Postives = 134/285 (47.02%), Query Frame = 1
Query: 37 KFVFVGGLQRSATTLLADLIQ-RLPCVSSLSLDNVSAEELARREPWKL-------NGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWV------------SDRHRY-----LLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAEALASSTATWRKLVTWMEKARILPPDLPSAAKGDIAVPYGLSASSFGYVMCWLCG 816
+ +FVGGLQRS T+ LA L+ + VS L+ + SAE L R PWK YF V TGG EGK +Q+ YPY L+ + +R + S L + R L +QW +W VLL+KTPEN+L + +LQ FG TSFIFVLRHPL+W+LA KW S H L L+A W H+ M L TL +A ++ E +W +T + A L P A+ + A +S YV C++ G
Sbjct: 20 RLLFVGGLQRSGTSSLAALLGGTIDGVSGLAFELGSAEHL-REAPWKSLVDVHTGRWMKYAYFREVVSTGGAEGKLLQSVYPYRYLLHDARTAPLRALLSQPTELSPLRS-ARQYLWEQWRRFWTPAL-VLLDKTPENLLMAPFLQATFGPRATSFIFVLRHPLSWSLAASKWACPWGAGNVSRASSTGHTRRAAPPLECVDRLMAVWRVAHERMATRLPTLRSATLLRTEV-----DSWIAALTPLLTAVGLRPPNGRLAEWE-ATRRAFLRASHQYVFCYMRG 295
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7S4C5P6_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C5P6_CHRCT) HSP 1 Score: 110 bits (276), Expect = 9.990e-25 Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = 1
Query: 43 VFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWK------LNGFTE-DYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQT-RAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKW 531
+FVGGLQRS T++LA L+ RLP + L + S ++ PWK G+ + YF V TGG EGK +Q+ +PY + + G+R S L A+ R L QW +W P+ ++K+PEN+L + +LQ +FG++ SF+FVLRHPL+W+LA KW
Sbjct: 179 LFVGGLQRSGTSMLAGLLTRLPGAAGLHFNASSLADM-EEAPWKSLSDVHTGGWMKWAYFREVVATGGAEGKLLQSVFPYRYTLHDAKFAGLRALLSAPSSLSPLRARAARRALWSQWRRFWRPA-PLFVDKSPENMLMAPFLQASFGAS-ASFLFVLRHPLSWSLAAAKW 346
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: UPI001C89452F (sulfotransferase n=1 Tax=Microbacterium sp. G2-8 TaxID=2842454 RepID=UPI001C89452F) HSP 1 Score: 107 bits (266), Expect = 9.130e-24 Identity = 72/209 (34.45%), Postives = 100/209 (47.85%), Query Frame = 1
Query: 31 EHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWV-SDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAE 654
+H+F FVGG+ RS TTLLA I R P VS L+ NV +E + V+R G G + A H + E S +A A L W+PYW+L+ +L+EKTP NI + YLQ F +SF+ + RHP+T ALAV KW S + + L L+ WL H+ + DL L +A ++ E
Sbjct: 9 DHRFTFVGGMHRSGTTLLASAISRSPGVSGLTNTNVVMDE-------------GQFLQTVYRPGYEMGGVTRWALDKHAYLTE----------------SDATATDLAALWSSWSPYWDLSAEMLVEKTPLNITKTRYLQAVF--PRSSFVIITRHPITQALAVMKWAPSQKEKLGLRFDLLIENWLRAHEALQRDLPQLEDATVIRYE 186
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A3M1JIW2_9BACT (Sulfotransferase n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A3M1JIW2_9BACT) HSP 1 Score: 101 bits (252), Expect = 5.020e-22 Identity = 65/207 (31.40%), Postives = 98/207 (47.34%), Query Frame = 1
Query: 34 HKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAE 654
HKFVF+GGL RS T+L ++ P +S S V +E G+F+Q+ YP + G + + S +SA+ R +L Q+W+ +WNL PVL+EK+P NI+ + +LQ F + +FI ++RHP+ ALA +KW S R L+A W+ H ML D L ++ E
Sbjct: 5 HKFVFIGGLHRSGTSLFFKSLKTHPDISGFSNTGVDEDE---------------------------GQFLQSVYPIAKRYGGPGKFGFAEDMHLTEKSPLVSAENRTKLFQEWSKWWNLNKPVLVEKSPPNIIKTRFLQALF--PEAAFILLIRHPIAVALATKKWSYT------SLRSLIAHWVRCHSLMLKDRVHLKQVMVLRYE 176
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Match: A0A7Z9BIY1_9CYAN (Uncharacterized protein n=2 Tax=Planktothrix TaxID=54304 RepID=A0A7Z9BIY1_9CYAN) HSP 1 Score: 95.1 bits (235), Expect = 1.130e-19 Identity = 64/209 (30.62%), Postives = 102/209 (48.80%), Query Frame = 1
Query: 34 HKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEELARREPWKLNGFTEDYFLNVHRTGGLEGKFVQTAYPYHNLIRETNQEGIRVEAIRRKVSSQLSAQTRAQLRQQWTPYWNLTHPVLLEKTPENILWSSYLQGAFGSTDTSFIFVLRHPLTWALAVRKWVSDRHRYLLSTRDLVAFWLTVHQHMLNDLDTLSNAQIVHAEAL 660
H++VF+GGL RS TTLLA+ ++ P +S +K G +ED EG+F+Q+ YP + + G + + S S++ ++ Q+W+ YW+L P+LLEK+P N+L + +LQ F ++ FI +LRHP+ A A +KW H L S L+ WL ++ D L ++ E L
Sbjct: 4 HQYVFIGGLHRSGTTLLANCLREHPKISG----------------FKDTGVSED-----------EGQFLQSVYPPAMVYGGPGRFGFNSGSFLNETSDLASSENAQKMFQEWSHYWDLQRPILLEKSPPNLLKTRFLQALF--PNSFFIIILRHPIPVAYATKKW---SHTQLYS---LIKHWLVCYEQFERDRPYLKRLLVLKYEDL 177 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142783 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13029 ID=mRNA_13029|Name=jgi.p|Trimin1|142783|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_109:523525..524343+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATCTCACGGTACAGAAACGCGCAGCCCCAGGAGCACAAGTTTGTGTTTGTback to top protein sequence of jgi.p|Trimin1|142783 >Trimin1|142783|gw1.109.47.1 ID=Trimin1|142783|gw1.109.47.1|Name=jgi.p|Trimin1|142783|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp ISRYRNAQPQEHKFVFVGGLQRSATTLLADLIQRLPCVSSLSLDNVSAEEback to top mRNA from alignment at Contig_109:523525..524343+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13029 ID=mRNA_13029|Name=jgi.p|Trimin1|142783|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=819bp|location=Sequence derived from alignment at Contig_109:523525..524343+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_109:523525..524343+ >mRNA_13029 ID=mRNA_13029|Name=jgi.p|Trimin1|142783|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_109:523525..524343+ (Tribonema minus UTEX_B_3156 )back to top |