mRNA_13028 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|173978 vs. uniprot
Match: A0A835ZFE1_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE1_9STRA) HSP 1 Score: 588 bits (1517), Expect = 2.980e-209 Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 1
Query: 1 MTGAAVIASPSPTSSAAAVSTHAPVALRLAWSLPLGKCVDATPLVLADPAVAGAQCLCGGAAAGALVVIGSHSGQVKAASLDTGEEVWAQHFGCRVESSPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIKCSPTSATFAANTPVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPSAALVFVATTAGVVASLTEGGELRWRHNAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSSGVQLWQLKLNSAIFSSPCVANHTVHAGSEVVAFGDHSGCITCVRVACGTVIWHQSVDRNRATTAYASPFACSCKGLTVFCVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCYKVAVGRD 1173
MTGAAVIASPSPTSSAAAVSTHAPVALRLAWSLPLGKCVDATPLVLADPAVAGAQCLCGGAAAGALVVIGSHSGQVKAASLDTGEEVWAQHFGCRVESSPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIKCSPTSATFAANTPVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPSAALVFVATTAGVVASLTEGGELRWRHNAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSSGVQLWQLKLNSAIFSSPCVANHTVHAGSEVVAFGDHSGCITCVRVACGTVIWHQSVDRNRATTAYASPFACSCKGLTVFCVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCYKVAVGRD
Sbjct: 1 MTGAAVIASPSPTSSAAAVSTHAPVALRLAWSLPLGKCVDATPLVLADPAVAGAQCLCGGAAAGALVVIGSHSGQVKAASLDTGEEVWAQHFGCRVESSPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIKCSPTSATFAANTPVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPSAALVFVATTAGVVASLTEGGELRWRHNAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSSGVQLWQLKLNSAIFSSPCVANHTVHAGSEVVAFGDHSGCITCVRVACGTVIWHQSVDRNRATTAYASPFACSCKGLTVFCVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCYKVAVGRD 391
BLAST of jgi.p|Trimin1|173978 vs. uniprot
Match: UPI000719E9C2 (acyl-CoA synthetase family member 4-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719E9C2) HSP 1 Score: 93.2 bits (230), Expect = 1.010e-16 Identity = 115/378 (30.42%), Postives = 172/378 (45.50%), Query Frame = 1
Query: 91 WSLPLGKCVDATPLVLADPAVAGAQCLCGGAAAGA---LVVIGSHSGQVKAASLDTGEEVWAQHFGCRVESSPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIKCSPTSATFAANTPVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPSAALVFVATTAGVVASL-TEGGELRWRHNAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSSGVQLWQLKLNSAIFSSPCV-------ANHTVHAGSEVVAFGDHSGCITCVRVACGTVIWHQSVDRNRATTAYASPFACSCKGLT----------VFCVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCYKVA 1161
W GKCVDA+PLV D G C C +G +V +GSHSG++ A +L +GE +W H R+ESS SA XXXXXXXXXXXXXXX XXXXXXXXXXXX + P V+ AT AG++ +L ++ G L W + P+F+ P + G + SG +W K + +FSS C + +++VAFG H + C+ + G + W +D Y+SPF S + + VA++ G L +L+ +G +++ L P +VFSSPV +G+ +++GCR++ + C +++
Sbjct: 853 WKYDTGKCVDASPLVAVDGY--GNFCPCEDCLSGHSQHVVFLGSHSGRMAAIALSSGEMLWDIHLPDRIESSACLSACGNFVIVGCYDYCVYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQCTWRKHLKGGSLFSSPCASRNPHT--VYAATLAGLLTALHSDTGRLIWTYRCGKPLFSSPQLVEGGVCIGCVDGVIYCIS---QSGNLMWNFKTDGYVFSSICTFPLITTSETAILQKPNQIVAFGCHDNHVYCLSSSNGKLNWKVCLDSE----VYSSPFIASAHVIANAKESVSVNAIVFVASTRGTLYMLDAETGNILTHYLLPYKVFSSPVALGNAVVVGCRDNFVYCMELS 1219
BLAST of jgi.p|Trimin1|173978 vs. uniprot
Match: A0A5A9NKA6_9TELE (Acyl-CoA synthetase family member 4 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NKA6_9TELE) HSP 1 Score: 87.4 bits (215), Expect = 7.890e-15 Identity = 133/386 (34.46%), Postives = 189/386 (48.96%), Query Frame = 1
Query: 70 PVALRLAWSLPLGKCVDATPLVLADPAVAGAQCLCGGAAAGALVVIGSHSGQVKAASLDTGEEVWAQHFGCRVESSPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIKCSPTSATFAANTPVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPSAALVFVATTAGVVASLTEG-GELRWRHNAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSSGVQLWQLKLNSAIFSSPCVANHTVHAGSEV----------------VAFGDHSGCITCVRVACGTVIWHQSVDRNRATTAYASPFACSCKGL-----TVFCVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCYKVA 1161
P+ L++AWS G+CVDA+P++L P V IGSHS +++A +L +GE +W + G R+ESS AA XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXX H+ S ++ T G + L G + W H++ P F+ P ++S +G++ SG QLW +FSSPCV++ T S+V V G H G I C+ G+++W N TT G+ T+ V+++ G + +L+ +G + + PG++FSSPV+ G L++GCRND++ C ++
Sbjct: 813 PLGLKVAWSSDTGRCVDASPVLLVAPERT-------------TVFIGSHSHRLQALNLRSGEVIWERILGDRLESS-AAITKCGTLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHYCGGGAVFSSPCLHL-SPRQLYCCTLGGDLHCLNPDIGAVLWTHSSGVPFFSSPYCSDS--CVFIGAVNGHIVGIS-HSGNQLWDFSTEGPVFSSPCVSSLTSLTNSQVSKTPGNTSPSSSPNFVVTCGSHDGHIYCLNAYNGSLLW------NFQTTGKVFSIPFMFDGVLWGFGTLVAVSSTDGTVWILDGETGTLKAALSLPGELFSSPVVWGQTLVVGCRNDYVYCLELG 1174
BLAST of jgi.p|Trimin1|173978 vs. uniprot
Match: A0A2R2MQU1_LINUN (acyl-CoA synthetase family member 4 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MQU1_LINUN) HSP 1 Score: 85.1 bits (209), Expect = 4.860e-14 Identity = 124/390 (31.79%), Postives = 171/390 (43.85%), Query Frame = 1
Query: 91 WSLPLGKCVDATPLVLADPAVAGAQCLCGGAAAGALVVIGSHSGQVKAASLDTGEEVWAQHFGCRVESSPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIKCSPTSATFAANTPVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPSAALVFVATTAGVVASLT-EGGELRWRH---NAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSSGVQLWQLKLNSAIFSSPCVANHTVHAGSEVVAFGDHSGCITCVRVACGTVIWHQSVDRNRATTAYASPFACS-----------------------CKGLTVF-------CVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCYKV 1158
W GKCVDA+PL++ G V IGSHS +V A L TG W + G R+ESSP S+ XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX + P + V+ AT AG V L+ + G++ W + P F+ PA+ G + +G LW + IFSSPC+ + + +E++ FG H + C+ T+ W +T + P + CK + F C+ + G L +L G S+ PG+VFSSPV+ GD++L+GCR+D++ C ++
Sbjct: 1260 WKYDTGKCVDASPLLVLRDRGQGQ------------VFIGSHSHRVSAIDLHTGNVHWDRELGDRIESSPCLSSCGNYVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQCAWKRDLGGGSVFSSPVVS--PDSCNVYAATLAGTVVKLSADMGKVNWMFYDKSDTKPFFSSPALTQEGVCIGCVNGKLYHIDY---NGKMLWSYSTSGPIFSSPCI-HQSDDRKTELIIFGSHDHYVYCLPSDAPTLRWKMKTSSQVYSTPFVFPVLKTEIVPKLIDNSNEIPNTSEKPGNICKNVKNFETYENFVCICATNGSLYLLALEDGTCFSQYNLPGEVFSSPVVFGDKILVGCRDDYIYCLQM 1631
BLAST of jgi.p|Trimin1|173978 vs. uniprot
Match: UPI001ED8B69A (beta-alanine-activating enzyme n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8B69A) HSP 1 Score: 84.0 bits (206), Expect = 1.020e-13 Identity = 90/391 (23.02%), Postives = 154/391 (39.39%), Query Frame = 1
Query: 91 WSLPLGKCVDATPLVLADPAVAGAQCLCGGAAAGALVVIGSHSGQVKAASLDTGEEVWAQHFGCRVESSPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIKCSP------TSATFAANTPVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAH---------------VPSAALVFVATTAGVVASLTE-GGELRWRHNAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSSGVQLWQLKLNSAIFSSPCVANHTVHAGSE-VVAFGDHSGCITCVRVACGTVIWHQSVDRNRATTAYASPF----ACSCKGLTV-------FCVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCYKVA 1161
W L KCVDA+P+VL A ++C+ VV+GSHSG V A +L+ GEE++ R+ESS ++ +++K SP T F + + + + S +V A+ +G+ A LTE G + W+++ AP+FA P V G + + G ++W + +FSS TV GSE ++ FG H + C+ + G +W + V T + P A + +G V V ++ G L +L+ +G +++ G++FSSP ++ +Q++ GCRN+ L C+ ++
Sbjct: 642 WKYDLLKCVDASPVVLQ---YADSKCI---------VVVGSHSGIVAAVNLENGEEIFRCVLPDRIESSVCSTPCGKFLFVGCYDHNLYCIGMPEGKVLWSFGAEEMVKSSPLIVNAGTCVAFGSYSGSMYCINFKGHLIWKVKLHSGSIYSSPTLYQGSPDLSEGDENRKYSLEDSSSSTTSQGIVLCASLSGMCAGLTERDGRILWKNSLDAPIFASPLVY--GHYAVFSSVKGMVICFSAKFGEKVWSFQAGGNVFSSFT----TVVVGSERLIVFGCHDHYVYCLS-SDGVPVWKKEVHSPVFATPFEFPVKFQVASNEEGGAVADVMTQLLAVCSTAGHLYILDCRNGTMIADVKVHGEIFSSPAVLCNQIVFGCRNNFLYCFTIS 1013
BLAST of jgi.p|Trimin1|173978 vs. uniprot
Match: T1IUS3_STRMM (AMP-binding_C domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IUS3_STRMM) HSP 1 Score: 82.8 bits (203), Expect = 1.900e-13 Identity = 129/366 (35.25%), Postives = 176/366 (48.09%), Query Frame = 1
Query: 76 ALRLAWSLPLGKCVDATPLVLADPAVAGAQCLCGGAAAGALVVIGSHSGQVKAASLDTGEEVWAQHFGCRVESSPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIKCSPTSATFAANTPVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPSAALVFVATTAGVVASLT-EGGELRWRHNAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSS--GVQLWQLKLNSAIFSSPCVANHTVHAGSEVVAFGDHSGCITCVRVACGTVIWHQSVDRNRATTAYASPFA---CSC-KGLTVFCVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCY 1152
AL+L W L KCVDA+ L++ + + V IGSHS + A ++TGE VW G R+ESS S XXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXX + P +++ T G + SL G + W N P+FA P V N L C S G Q+W +IFSSP V +H + + FG H + CV V G V W ++ + YASPF+ CS + V +A G + ++ ++G+ ++ G++FSSPV++ D+L+IGCR++ + C+
Sbjct: 281 ALKLGWRFDLRKCVDASALMVGSTDNSKVR-----------VFIGSHSNEFAAIDVETGEAVWVVRLGGRIESSACVSLCGTLVIVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKISPTHGSIFASPSVSKQPHC--IYIGTLDGKLCSLNPSNGLVFWEKNLQKPIFASPVVTNDKVFAANVNGD-----LYCFSHIGKQIWLFSTIGSIFSSPIV----IH--KKFLMFGCHDSKLYCVLVETGHVHWILQMN----SPIYASPFSLFNCSKERSGHVGVIACITGEIKLVSVINGSEIASYTLSGEIFSSPVILKDKLVIGCRDNFVYCF 618
BLAST of jgi.p|Trimin1|173978 vs. uniprot
Match: A0A1B6HCM2_9HEMI (Uncharacterized protein n=2 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6HCM2_9HEMI) HSP 1 Score: 78.6 bits (192), Expect = 2.430e-13 Identity = 58/200 (29.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query: 565 HVPSAALVFVATTAGVVASLT-EGGELRWRHNAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSSGVQLWQLKLNSAIFSSPCVANHTVHAGSEVVAFGDHSGCITCVRVACGTV--IWHQSVDRNRATTAYASPFACSCKGLTVFCVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCYK 1155
H+P+ LV V + G V +L GE++W +PVF+ P V +G L SGV++W++ + IFSS V + +V FG H + C+R + V +W Q + + YA+P G AT+ G++ + SG +++ P ++FSSPV+ D L+IGCR++ + C +
Sbjct: 11 HLPTLGLVVVVSLGGQVVALNCATGEVKWHATLLSPVFSSPCVV-AGVVVIAEVEGTLHAFLP-ESGVEVWKISVGGKIFSSLSVTGN-------LVLFGCHDNNLYCLRCSEQAVELLWRQ----DAGSAVYATPVRL---GPHFLAFATTAGLVYIACLHSGKIITSICLPKEIFSSPVIYRDSLIIGCRDNSVYCLR 194
BLAST of jgi.p|Trimin1|173978 vs. uniprot
Match: A0A218VEY3_9PASE (Acyl-CoA synthetase family member 4 n=1 Tax=Lonchura striata domestica TaxID=299123 RepID=A0A218VEY3_9PASE) HSP 1 Score: 80.9 bits (198), Expect = 1.000e-12 Identity = 107/372 (28.76%), Postives = 155/372 (41.67%), Query Frame = 1
Query: 58 STHAPVALRLAWSLPLGKCVDATPLVLADPAVAGAQCLCGGAAAGALVVIGSHSGQVKAASLDTGEEVWAQHFGCRVESSPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIKCSPTSATFAANTPVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPSAALVFVATTAGVVASLTEGGELRWRHNAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSSGVQLWQLKLNSAIFSSPCVANHTVHAGSEVVAFGDHSGCITCVRVACGTVIWHQSVDRNRATTAYASPFACSCKGLT---VFCVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCYKVAV 1164
S+ A +ALR+ W KCVDA+PL++ A V +GSHS ++A LD GE W + G R+ESS S +++ XXXXXXXXXXXXXXXXXXXXXXX H V+ + T V G W+ N P+F+ P N G V++WQ N +FSSPC+++ T + + FG H I C + G ++W ++ Y +PF L + ++ G + +L+ SG PG+VFSSPV+ G +L++GCRND++ C + +
Sbjct: 619 SSVAELALRVRWKSNTKKCVDASPLIIIPTKEE----------VSASVYVGSHSHAMQAIDLDLGEIKWEKTLGDRIESSACVSKCGNFIVVGCYDGLVY-----------------VLQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALDIYVRALTHFYMKRCVYGSYTVKVT------GSKIWKSNLGKPLFSSPHC-NEGYVCVGCVDGNLYCYTHYGEKVKVWQFSTNGPVFSSPCLSSLT----KQEIFFGSHDCFIYCCNME-GNLLW----KFEATSSVYGTPFIFQSDDLNNKILLAAVSTDGKVWILDAKSGTAEGVDKLPGEVFSSPVVWGTKLVVGCRNDYVYCLDLYI 947
BLAST of jgi.p|Trimin1|173978 vs. uniprot
Match: UPI0018860612 (beta-alanine-activating enzyme isoform X1 n=2 Tax=Syngnathus acus TaxID=161584 RepID=UPI0018860612) HSP 1 Score: 79.3 bits (194), Expect = 3.250e-12 Identity = 113/359 (31.48%), Postives = 163/359 (45.40%), Query Frame = 1
Query: 91 WSLPLGKCVDATPLVLADPAVAGAQCLCGGAAAGALVVIGSHSGQVKAASLDTGEEVWAQHFGCRVESSPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIKCSPTSATFAANTPVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPSAALVFVATTAGVVASL-TEGGELRWRHNAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSSGVQLWQLKLNSAIFSSPCVANHTVHAGSEVVAFGDHSGCITCVRVACGTVIWHQSVDRNRATTAYASPFACSCKGLTVFCVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCYKVAV 1164
WS G+CVDA+P++L G V IGSHS +++A LD+G +W + G R+E+S A S XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX + ++VAT G + L + G++ W HN P F+ P +G L + +G +WQ + ++A+FSSPCV + + + G H C+ C+ A F +G V VA++ G + +L+ G + PG++FSSPV+ G L++GCRND++ C ++ +
Sbjct: 682 WSSDTGRCVDASPVLLVREDGNGTS-----------VFIGSHSHRLQALDLDSGRLLWERVLGGRIEASAAVSPCGRYVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQAQRCIWRHHCEGGAVFSSPYLD--VTRRQLYVATLGGKLLCLHPDNGDVLWSHNRKVPFFSSPKCGGAGGRVAIGSVDGNILCFS-YNGTLIWQFRTDAAVFSSPCVTSDL-----KRLLCGSHDSCLYCLNTA--DXXXXXXXXXXXXXXXXXXXFDGGKRGELVG-VASTDGTVYILDARDGRALCSRTLPGELFSSPVVRGRSLVVGCRNDYVYCLQINI 1018
BLAST of jgi.p|Trimin1|173978 vs. uniprot
Match: E0W429_PEDHC (AMP dependent ligase, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0W429_PEDHC) HSP 1 Score: 77.4 bits (189), Expect = 1.360e-11 Identity = 77/361 (21.33%), Postives = 137/361 (37.95%), Query Frame = 1
Query: 79 LRLAWSLPLGKCVDATPLVLADPAVAGAQCLCGGAAAGALVVIGSHSGQVKAASLDTGEEVWAQHFGCRVESSPAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIIKCSPTSATFAANTPVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPSAALVF-VATTAGVVASLTE-GGELRWRHNAPAPVFADPAVANSGXXXXXXXXXXXXLGLACSSGVQLWQLKLNSAIFSSPCVANHTVHAGSEVVAFGDHSGCITCVRVACGT-VIWHQSVDRNRATTAYASPFACSCKGLTVFCVATSCGMLAVLEQVSGAVVSRALAPGQVFSSPVMVGDQLLIGCRNDHLLCY 1152
LR+ W LGKC+DATP V G + V++GSHS ++ + +G+ +W + G R+ES A + D+IK +P + VL + F +AT G SL++ E+ W+ +P+FA P + N G LW I+S+P + + FG + + C+RV ++W + +D ++ ++ A + CVA++ G++ +L +SG V +R G+VFSSP+ + ++ ++GCR+++L +
Sbjct: 636 LRIKWKHDLGKCIDATPTVFN---YLGEE----------RVIVGSHSFKISCLLITSGDVLWTKTLGGRIESGVAITKDGTLGFVGCYDNFVYCISMIDGSTKWQFKTDDMIKSTPC---LDSKEKVLFVASYDRHLHILDVESGVLQKKIKLSEKGIFSSGCISKVYNTFHIATLDGTCVSLSQITFEIDWKIKLKSPIFASPCLINDDKEIIFTEVFGTLHCFDIFKGTNLWNYTAGGYIYSTP---TFYFLKDMKSIVFGCNDSNVYCLRVDKEIDLLWKRKLD----SSIFSRSSAFHLGEVNAACVASTKGIVYILNLLSGNVFTRIKLNGEVFSSPIFINNEFVVGCRDNYLYTF 973 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173978 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13028 ID=mRNA_13028|Name=jgi.p|Trimin1|173978|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1176bp|location=Sequence derived from alignment at Contig_109:520128..521303+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACGGGGGCTGCAGTCATAGCATCTCCATCGCCAACGTCCTCTGCAGCback to top protein sequence of jgi.p|Trimin1|173978 >Trimin1|173978|e_gw1.109.77.1 ID=Trimin1|173978|e_gw1.109.77.1|Name=jgi.p|Trimin1|173978|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=392bp MTGAAVIASPSPTSSAAAVSTHAPVALRLAWSLPLGKCVDATPLVLADPAback to top mRNA from alignment at Contig_109:520128..521303+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13028 ID=mRNA_13028|Name=jgi.p|Trimin1|173978|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1176bp|location=Sequence derived from alignment at Contig_109:520128..521303+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_109:520128..521303+ >mRNA_13028 ID=mRNA_13028|Name=jgi.p|Trimin1|173978|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1176bp|location=Sequence derived from alignment at Contig_109:520128..521303+ (Tribonema minus UTEX_B_3156 )back to top |