mRNA_12697 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137164
Unique NamemRNA_12697
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835YN74_9STRA (Cupredoxin (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN74_9STRA)

HSP 1 Score: 285 bits (729), Expect = 9.750e-98
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1
Query:    1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396
            LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE
Sbjct:    1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 132          
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835YM75_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM75_9STRA)

HSP 1 Score: 254 bits (649), Expect = 5.080e-85
Identity = 115/132 (87.12%), Postives = 122/132 (92.42%), Query Frame = 1
Query:    1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396
            L+VTSYTN +GTFQTRT NGMLPGPLMRMEAC  YSVTLNNRM GYL PFPEAPFNSYRDPLVTNMH HGLH+SG+ GGDDMTVEI+PGAD TY+YKIPCDH+GGLHWYHPHHHGSTTLQAGAGAA LLVVE
Sbjct:    1 LRVTSYTNKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVE 132          
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A836CMI9_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMI9_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.110e-53
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 1
Query:   91 ACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396
            ACG Y VTLNNRMQGY  PFPEAPFNSYRDPL TN+HTHGLHVSG+EGGDD+TV I+PG   T+ YKIPC+H+GGLHWYHPHHHGSTTLQAGAGAAGLL+VE
Sbjct:  882 ACGEYRVTLNNRMQGYEPPFPEAPFNSYRDPLRTNLHTHGLHVSGSEGGDDVTVVIEPGESHTFTYKIPCNHSGGLHWYHPHHHGSTTLQAGAGAAGLLLVE 983          
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA)

HSP 1 Score: 160 bits (404), Expect = 6.500e-43
Identity = 74/136 (54.41%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPE----APFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396
            L V       G  +TR +NGM+PGPLMRM+ CG Y +T+ N ++G+ AP P     A  NS  DPLVTN+H HGLHVSG   GDD+   I+PG    Y Y IPCDH  G +WYHPHHHGS  LQ G GAAG+LV+E
Sbjct:  547 LDVVMLETERGAVRTRAWNGMIPGPLMRMQPCGTYHLTVKNALKGWPAPPPRIAAAAQLNSVHDPLVTNVHVHGLHVSGEAPGDDVFGVIEPGDAAMYTYTIPCDHASGTNWYHPHHHGSVALQTGGGAAGMLVIE 682          
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.030e-41
Identity = 67/123 (54.47%), Postives = 87/123 (70.73%), Query Frame = 1
Query:   31 GTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPF-PEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396
            GT +T  +NG+ PGP+MRM+ACGVY +TL N ++G+     PEA  N   DP VTN+H HG+H+SG   GDD+   I  G +Q Y+Y +PCDHTGG +WYHPHHHG   LQ+G GA G+L+VE
Sbjct:  294 GTMRTVGYNGLQPGPIMRMQACGVYHLTLKNTLEGWPEGIGPEAGVNGEHDPTVTNIHLHGMHISGMAPGDDVFAAIAAGEEQEYVYTVPCDHTGGTNWYHPHHHGIVALQSGTGAMGMLIVE 416          
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835YZ52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ52_9STRA)

HSP 1 Score: 149 bits (376), Expect = 3.830e-39
Identity = 69/132 (52.27%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396
            L    + N  GT +TR +NG +P PLMR+ ACGVY +TL N  Q +    P    N +R+P  TN+HTHGLHVSG    DD   E+ PG +  Y Y IPCDH GG H+YHPHHHGS  L AGAGA G+L V+
Sbjct:  593 LGAVQFANKWGTTRTRGYNGGVPAPLMRLRACGVYKLTLRNAQQKW--GNPGGALNDFREPATTNLHTHGLHVSGIGNADDTYREVLPGKETVYTYAIPCDHAGGTHFYHPHHHGSVFLSAGAGAVGMLRVD 722          
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA)

HSP 1 Score: 148 bits (374), Expect = 7.100e-39
Identity = 68/131 (51.91%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    7 VTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAP-FNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396
            VT  T   GT +TR +NG++PGP++RM+AC VY +T+ N +  +    PE    N +  P VTN+HTHGLH+SG    D+  V I PG + TY Y+IPCDH GGLHWYHPH HG+  LQ   GAAGL+V+E
Sbjct:  409 VTLTTADGGTLRTRAWNGLIPGPIIRMKACQVYYLTVRNDLGAWPEGKPETGVMNGFHGPTVTNIHTHGLHISGESPADNPFVSILPGQEYTYQYRIPCDHIGGLHWYHPHKHGAVALQTHGGAAGLIVIE 539          
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835Z3E9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3E9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.810e-38
Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1
Query:   16 YTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396
            +TN +GT +TR +NG +PGPLMR++AC VY +TL N + G+  P      N + +P  TN+HTHGLHVSG    D++  E+  G    Y Y IPCDH GG H+YH HHHG  TLQAG GA GLL V+
Sbjct:  705 FTNKYGTTRTRGYNGGIPGPLMRLQACKVYKLTLKNTLSGWADP-TSPTLNQFTNPSTTNLHTHGLHVSGMGNADNVLREVARGESAVYTYAIPCDHAGGTHFYHAHHHGGVTLQAGGGAVGLLRVD 830          
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.810e-38
Identity = 70/127 (55.12%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   22 NTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPF-PEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMT-VEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396
            N  G   TR FNG +PGP +RMEAC  Y +T  N     L P  P   +N+ +DP  TN+HTHGLH+SG    DD+  VEI PG   T++Y IPCDH GG  WYHPHHHGST+LQ G GA G LVVE
Sbjct:  665 NFWGVTTTRAFNGQIPGPTIRMEACQTYELTYTNN----LGPLNPGGAWNTMKDPNTTNLHTHGLHISGESPADDVLYVEITPGESHTFVYTIPCDHAGGTFWYHPHHHGSTSLQMGGGAMGALVVE 787          
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.600e-37
Identity = 67/131 (51.15%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVV 393
            L V +     GT +TR +NGM+PGPLMRME CGVY + + N    +     +   N+   P  TN+H HGLHVSG   GDD  V I+PGA Q Y   +PCDH+ G +WYHPHHHGS  +Q   GAAGLLVV
Sbjct:  595 LGVVNVATAAGTMRTRAWNGMIPGPLMRMEPCGVYHINVFNDQAEFPDTARDYALNTMGAPTHTNLHVHGLHVSGESPGDDSFVTIEPGATQQYTIAVPCDHSSGSNWYHPHHHGSVAIQTEGGAAGLLVV 725          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YN74_9STRA9.750e-98100.00Cupredoxin (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
A0A835YM75_9STRA5.080e-8587.12Plastocyanin-like domain-containing protein (Fragm... [more]
A0A836CMI9_9STRA1.110e-5382.35Plastocyanin-like domain-containing protein (Fragm... [more]
A0A836CK08_9STRA6.500e-4354.41Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZH56_9STRA1.030e-4154.47CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YZ52_9STRA3.830e-3952.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCB5_9STRA7.100e-3951.91CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z3E9_9STRA1.810e-3851.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5LB76_9PHAE1.810e-3855.12PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YVH6_9STRA1.600e-3751.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_65contigContig_65:702005..703805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137164|gw1.65.40.1
DescriptionBelongs to the multicopper oxidase family
COG categoryQ
Max annot lvl33208|Metazoa
EggNOG OGsCOG2132@1|root,KOG1263@2759|Eukaryota,39NIE@33154|Opisthokonta,3CQ2P@33208|Metazoa,3E681@33213|Bilateria,48RMG@7711|Chordata
Evalue2.03e-25
Seed ortholog7739.XP_002605253.1
Hectar predicted targeting categoryother localisation
TranscriptId137486
TrackFilteredModels1
ProteinId137164
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137164gene_12697Tribonema minus UTEX_B_3156 geneContig_65 702005..703805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137164Trimin1|137164|gw1.65.40.1Tribonema minus UTEX_B_3156 polypeptideContig_65 702005..703805 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12697_3exon_12697_3Tribonema minus UTEX_B_3156 exonContig_65 702005..702090 -
exon_12697_2exon_12697_2Tribonema minus UTEX_B_3156 exonContig_65 703037..703256 -
exon_12697_1exon_12697_1Tribonema minus UTEX_B_3156 exonContig_65 703716..703805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12697CDS_12697Tribonema minus UTEX_B_3156 CDSContig_65 703716..703805 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12697 ID=mRNA_12697|Name=jgi.p|Trimin1|137164|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_65:702005..703805- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCAAGTCACGAGCTACACCAACACGCACGGCACTTTCCAGACGCGCAC
CTTCAACGGCATGCTCCCCGGCCCGCTCATGCGCATGGAGGCCTGCGGTG
TGTACAGCGTGACGCTCAACAACCGCATGCAGGGGTACCTCGCCCCCTTC
CCCGAGGCCCCCTTCAACTCTTACCGCGACCCCCTCGTGACCAACATGCA
CACGCACGGCCTGCACGTGAGCGGCGCCGAGGGCGGCGACGACATGACGG
TGGAGATCCAGCCTGGCGCCGACCAGACGTACATCTACAAGATACCGTGC
GACCACACCGGCGGGCTGCACTGGTACCACCCGCACCACCACGGCTCAAC
GACACTGCAGGCCGGCGCTGGCGCCGCGGGCCTGCTCGTCGTGGAG
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protein sequence of jgi.p|Trimin1|137164

>Trimin1|137164|gw1.65.40.1 ID=Trimin1|137164|gw1.65.40.1|Name=jgi.p|Trimin1|137164|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp
LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPF
PEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPC
DHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE
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mRNA from alignment at Contig_65:702005..703805-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12697 ID=mRNA_12697|Name=jgi.p|Trimin1|137164|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1801bp|location=Sequence derived from alignment at Contig_65:702005..703805- (Tribonema minus UTEX_B_3156 )
CTGCAAGTCACGAGCTACACCAACACGCACGGCACTTTCCAGACGCGCAC CTTCAACGGCATGCTCCCCGGCCCGCTCATGCGCATGGAGGTGAGCACTG CTGCTGAGCGCTGCCCCTGGTGCTAACCCAGGGGATCTAGGGCGTGGCAT GACTTCGGGCGCCCAGTGTTGGCTCCGCAATGACATATCGTAGAAGATGT TTGCGTTCTGGCTGGGCTTACCATGTTCACAAGCCAAAATGGCGCAAGAC GGTGGCCTGCTCACTCCAGTATTTGCTCAATACCTTTCCCCCTTCCTCTA TATTTGGTTGCTGCATGGATATTCTACCTTCGGCAGGCAGAGGTTGCAGG GCAATAGAGCAATGTCGCCGGTGTTGTATCCGTGTAACACAATGGACAGA CACTTCAACTTCTTCGAAGAAGTGCATCCAGTATGCACTCCAAGATGGCA CTGCGCACTTAAGCTTAGTGCCTCGACTTTCCGTGAGCGACGCGCCAGGC GTGCGTCCGACCCAGACTCATCGACTCGTCGACTCCTCGTGCCTTCCAGG CCTGCGGTGTGTACAGCGTGACGCTCAACAACCGCATGCAGGGGTACCTC GCCCCCTTCCCCGAGGCCCCCTTCAACTCTTACCGCGACCCCCTCGTGAC CAACATGCACACGCACGGCCTGCACGTGAGCGGCGCCGAGGGCGGCGACG ACATGACGGTGGAGATCCAGCCTGGCGCCGACCAGACGTACATCTACAAG ATACCGTGCGACCACACCGGTGAGACGTAAAGCTGGAGTTATTGTCCACC CCATGCAAATTAGAGTTGAAGTTGCACCACTATCCTAACAGTCGAGATCA AGCCTGGCGCCGATCACACGTACCTCTACAAGATACCGTGCGACCACACC GGTGAGACTCAAAGCCAAAGTTTTGACACCCATAGAAGTTGAAGTTGCAC CAACATCCCAACAGTAGAGAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTA GGGTTAGGGTTCCAGCCCGTTGTCGACCACATGTACCTCCACCAGATACC GTGACCAAACCGGTGAGACTTCAAGTTACTAACCCTTAACCAGCCCTTAA CCCTAGCCTTGACACTAAACCTAACCTTATCCTCATCCCCTGCCTAACGC TCACCCTAACCCCCTTCTGCAAACTCTCAGGCTAACCTGGCCTTCAACTT ATGTGCAGCAGGGTCCGTTATTACAGAACTGCTGATGCCTGTTTTCTGGT GCAGATGCTGGGGGCTGGCCCTACCGGCGCTTTGTCGGCAGCGATGCTTA AGCAGAAGCCTGCGCCATCGCTGGCTCTCTCTGTGACATGATCCCTCATG CTGCGCTTGATACTCTGCAGTCATCCTGGCGTCGAGTGCTGCTACAAGTG CTTGGCACACTTTCACGTCAGTCACTCCTGCTATGACCGTTCGTATACGC AGGCGTGCTGGAAGCAATCTACGGCCTTGTACCTTGCCAACTAGACGAAC GTCGGTGCTGCTCTGATCACTGCATTACGGCCCTGATGCGCTGCAGGCGG CTGCATTGGTACCACCCACACCACCACGGCTCGACCACACTGCAGGCCGT GCCTTCACCACTACGCACACGCGCAGGCACGTCAGAAGCGCTCTGCAGGA TTGCTTACACGTGCTGCTGCCATGCTGATGAGTTGATGACTGCGTTCTGC CGATGCTCACTGCAGGCGGGCTGCACTGGTACCACCCGCACCACCACGGC TCAACGACACTGCAGGCCGGCGCTGGCGCCGCGGGCCTGCTCGTCGTGGA G
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Coding sequence (CDS) from alignment at Contig_65:702005..703805-

>mRNA_12697 ID=mRNA_12697|Name=jgi.p|Trimin1|137164|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_65:702005..703805- (Tribonema minus UTEX_B_3156 )
CTGCAAGTCACGAGCTACACCAACACGCACGGCACTTTCCAGACGCGCAC
CTTCAACGGCATGCTCCCCGGCCCGCTCATGCGCATGGAGGCCTGCGGTG
TGTACAGCGTGACGCTCAACAACCGCATGCAGGGGTACCTCGCCCCCTTC
CCCGAGGCCCCCTTCAACTCTTACCGCGACCCCCTCGTGACCAACATGCA
CACGCACGGCCTGCACGTGAGCGGCGCCGAGGGCGGCGACGACATGACGG
TGGAGATCCAGCCTGGCGCCGACCAGACGTACATCTACAAGATACCGTGC
GACCACACCGGCGGGCTGCACTGGTACCACCCGCACCACCACGGCTCAAC
GACACTGCAGGCCGGCGCTGGCGCCGCGGGCCTGCTCGTCGTGGAG
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