mRNA_12697 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835YN74_9STRA (Cupredoxin (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN74_9STRA) HSP 1 Score: 285 bits (729), Expect = 9.750e-98 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 Query: 1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE Sbjct: 1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 132
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835YM75_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM75_9STRA) HSP 1 Score: 254 bits (649), Expect = 5.080e-85 Identity = 115/132 (87.12%), Postives = 122/132 (92.42%), Query Frame = 1 Query: 1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396 L+VTSYTN +GTFQTRT NGMLPGPLMRMEAC YSVTLNNRM GYL PFPEAPFNSYRDPLVTNMH HGLH+SG+ GGDDMTVEI+PGAD TY+YKIPCDH+GGLHWYHPHHHGSTTLQAGAGAA LLVVE Sbjct: 1 LRVTSYTNKYGTFQTRTLNGMLPGPLMRMEACSEYSVTLNNRMHGYLPPFPEAPFNSYRDPLVTNMHLHGLHISGSAGGDDMTVEIEPGADHTYLYKIPCDHSGGLHWYHPHHHGSTTLQAGAGAAALLVVE 132
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A836CMI9_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMI9_9STRA) HSP 1 Score: 191 bits (484), Expect = 1.110e-53 Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 1 Query: 91 ACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396 ACG Y VTLNNRMQGY PFPEAPFNSYRDPL TN+HTHGLHVSG+EGGDD+TV I+PG T+ YKIPC+H+GGLHWYHPHHHGSTTLQAGAGAAGLL+VE Sbjct: 882 ACGEYRVTLNNRMQGYEPPFPEAPFNSYRDPLRTNLHTHGLHVSGSEGGDDVTVVIEPGESHTFTYKIPCNHSGGLHWYHPHHHGSTTLQAGAGAAGLLLVE 983
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA) HSP 1 Score: 160 bits (404), Expect = 6.500e-43 Identity = 74/136 (54.41%), Postives = 89/136 (65.44%), Query Frame = 1 Query: 1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPE----APFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396 L V G +TR +NGM+PGPLMRM+ CG Y +T+ N ++G+ AP P A NS DPLVTN+H HGLHVSG GDD+ I+PG Y Y IPCDH G +WYHPHHHGS LQ G GAAG+LV+E Sbjct: 547 LDVVMLETERGAVRTRAWNGMIPGPLMRMQPCGTYHLTVKNALKGWPAPPPRIAAAAQLNSVHDPLVTNVHVHGLHVSGEAPGDDVFGVIEPGDAAMYTYTIPCDHASGTNWYHPHHHGSVALQTGGGAAGMLVIE 682
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.030e-41 Identity = 67/123 (54.47%), Postives = 87/123 (70.73%), Query Frame = 1 Query: 31 GTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPF-PEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396 GT +T +NG+ PGP+MRM+ACGVY +TL N ++G+ PEA N DP VTN+H HG+H+SG GDD+ I G +Q Y+Y +PCDHTGG +WYHPHHHG LQ+G GA G+L+VE Sbjct: 294 GTMRTVGYNGLQPGPIMRMQACGVYHLTLKNTLEGWPEGIGPEAGVNGEHDPTVTNIHLHGMHISGMAPGDDVFAAIAAGEEQEYVYTVPCDHTGGTNWYHPHHHGIVALQSGTGAMGMLIVE 416
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835YZ52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ52_9STRA) HSP 1 Score: 149 bits (376), Expect = 3.830e-39 Identity = 69/132 (52.27%), Postives = 84/132 (63.64%), Query Frame = 1 Query: 1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396 L + N GT +TR +NG +P PLMR+ ACGVY +TL N Q + P N +R+P TN+HTHGLHVSG DD E+ PG + Y Y IPCDH GG H+YHPHHHGS L AGAGA G+L V+ Sbjct: 593 LGAVQFANKWGTTRTRGYNGGVPAPLMRLRACGVYKLTLRNAQQKW--GNPGGALNDFREPATTNLHTHGLHVSGIGNADDTYREVLPGKETVYTYAIPCDHAGGTHFYHPHHHGSVFLSAGAGAVGMLRVD 722
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA) HSP 1 Score: 148 bits (374), Expect = 7.100e-39 Identity = 68/131 (51.91%), Postives = 88/131 (67.18%), Query Frame = 1 Query: 7 VTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAP-FNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396 VT T GT +TR +NG++PGP++RM+AC VY +T+ N + + PE N + P VTN+HTHGLH+SG D+ V I PG + TY Y+IPCDH GGLHWYHPH HG+ LQ GAAGL+V+E Sbjct: 409 VTLTTADGGTLRTRAWNGLIPGPIIRMKACQVYYLTVRNDLGAWPEGKPETGVMNGFHGPTVTNIHTHGLHISGESPADNPFVSILPGQEYTYQYRIPCDHIGGLHWYHPHKHGAVALQTHGGAAGLIVIE 539
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835Z3E9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3E9_9STRA) HSP 1 Score: 147 bits (371), Expect = 1.810e-38 Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1 Query: 16 YTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396 +TN +GT +TR +NG +PGPLMR++AC VY +TL N + G+ P N + +P TN+HTHGLHVSG D++ E+ G Y Y IPCDH GG H+YH HHHG TLQAG GA GLL V+ Sbjct: 705 FTNKYGTTRTRGYNGGIPGPLMRLQACKVYKLTLKNTLSGWADP-TSPTLNQFTNPSTTNLHTHGLHVSGMGNADNVLREVARGESAVYTYAIPCDHAGGTHFYHAHHHGGVTLQAGGGAVGLLRVD 830
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.810e-38 Identity = 70/127 (55.12%), Postives = 82/127 (64.57%), Query Frame = 1 Query: 22 NTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPF-PEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMT-VEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVVE 396 N G TR FNG +PGP +RMEAC Y +T N L P P +N+ +DP TN+HTHGLH+SG DD+ VEI PG T++Y IPCDH GG WYHPHHHGST+LQ G GA G LVVE Sbjct: 665 NFWGVTTTRAFNGQIPGPTIRMEACQTYELTYTNN----LGPLNPGGAWNTMKDPNTTNLHTHGLHISGESPADDVLYVEITPGESHTFVYTIPCDHAGGTFWYHPHHHGSTSLQMGGGAMGALVVE 787
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.600e-37 Identity = 67/131 (51.15%), Postives = 82/131 (62.60%), Query Frame = 1 Query: 1 LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFPEAPFNSYRDPLVTNMHTHGLHVSGAEGGDDMTVEIQPGADQTYIYKIPCDHTGGLHWYHPHHHGSTTLQAGAGAAGLLVV 393 L V + GT +TR +NGM+PGPLMRME CGVY + + N + + N+ P TN+H HGLHVSG GDD V I+PGA Q Y +PCDH+ G +WYHPHHHGS +Q GAAGLLVV Sbjct: 595 LGVVNVATAAGTMRTRAWNGMIPGPLMRMEPCGVYHINVFNDQAEFPDTARDYALNTMGAPTHTNLHVHGLHVSGESPGDDSFVTIEPGATQQYTIAVPCDHSSGSNWYHPHHHGSVAIQTEGGAAGLLVV 725 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137164 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12697 ID=mRNA_12697|Name=jgi.p|Trimin1|137164|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_65:702005..703805- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGCAAGTCACGAGCTACACCAACACGCACGGCACTTTCCAGACGCGCACback to top protein sequence of jgi.p|Trimin1|137164 >Trimin1|137164|gw1.65.40.1 ID=Trimin1|137164|gw1.65.40.1|Name=jgi.p|Trimin1|137164|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp LQVTSYTNTHGTFQTRTFNGMLPGPLMRMEACGVYSVTLNNRMQGYLAPFback to top mRNA from alignment at Contig_65:702005..703805- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12697 ID=mRNA_12697|Name=jgi.p|Trimin1|137164|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1801bp|location=Sequence derived from alignment at Contig_65:702005..703805- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_65:702005..703805- >mRNA_12697 ID=mRNA_12697|Name=jgi.p|Trimin1|137164|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_65:702005..703805- (Tribonema minus UTEX_B_3156 )back to top |