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Homology
BLAST of jgi.p|Trimin1|71082 vs. uniprot
Match: A0A835YU06_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU06_9STRA) HSP 1 Score: 442 bits (1136), Expect = 1.530e-155 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1
Query: 52 MAMQEAMYGQESAQYAASLYTLATSHASMGHMEEAEALFRRVLSILGPGVHYNAHNLVASCHISLAGMLLSQERDEEALTLLSEAVGMLGTTHPDAAPAMGAYATALLKARREEEALDMATQALNLRTRNGALVDAPECVNLLLVVGHIHRMREEMRQAEEMVRMSLGMAERVFGAESPYTARVMQALSECLRTEPGCFTEAEELGRKAREILSKSEQQGGGEGPPSPDDQ 744
MAMQEAMYGQESAQYAASLYTLATSHASMGHMEEAEALFRRVLSILGPGVHYNAHNLVASCHISLAGMLLSQERDEEALTLLSEAVGMLGTTHPDAAPAMGAYATALLKARREEEALDMATQALNLRTRNGALVDAPECVNLLLVVGHIHRMREEMRQAEEMVRMSLGMAERVFGAESPYTARVMQALSECLRTEPGCFTEAEELGRKAREILSKSEQQGGGEGPPSPDDQ
Sbjct: 1 MAMQEAMYGQESAQYAASLYTLATSHASMGHMEEAEALFRRVLSILGPGVHYNAHNLVASCHISLAGMLLSQERDEEALTLLSEAVGMLGTTHPDAAPAMGAYATALLKARREEEALDMATQALNLRTRNGALVDAPECVNLLLVVGHIHRMREEMRQAEEMVRMSLGMAERVFGAESPYTARVMQALSECLRTEPGCFTEAEELGRKAREILSKSEQQGGGEGPPSPDDQ 231
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|71082|CE71081_81 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 71404 |
| Track | FilteredModels1 |
| ProteinId | 71082 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12610 ID=mRNA_12610|Name=jgi.p|Trimin1|71082|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=865bp|location=Sequence derived from alignment at Contig_48:488225..494770+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
CTGGTGGGCACAGGGTCTCATCAAGAGGCACAGGACACCCTGCAAAGGGC AATGGCAATGCAGGAGGCTATGTATGGGCAGGAGTCAGCACAGTATGCAG CAAGCCTGTACACTTTGGCCACAAGCCATGCCAGCATGGGGCATATGGAA GAGGCAGAGGCCCTGTTCAGGCGGGTACTCTCCATACTTGGCCCCGGAGT CCACTACAACGCGCACAACTTGGTGGCCAGCTGTCACATCTCACTAGCCG GCATGCTGCTCAGTCAGGAACGGGACGAGGAGGCCCTTACTCTGCTCTCA GAAGCGGTAGGTATGCTGGGCACCACGCATCCCGACGCTGCTCCCGCCAT GGGCGCGTACGCTACGGCGTTGTTGAAGGCGCGGCGAGAGGAGGAAGCGC TCGACATGGCCACGCAGGCGCTGAACCTCAGGACAAGGAACGGTGCATTG GTGGATGCGCCCGAGTGCGTGAACCTGCTTCTGGTGGTTGGCCACATTCA CCGAATGCGGGAAGAAATGCGGCAAGCAGAGGAAATGGTGCGCATGTCTC TGGGCATGGCCGAGCGAGTGTTTGGCGCGGAATCGCCATACACAGCAAGG GTCATGCAAGCCCTGTCAGAGTGCCTCAGGACAGAGCCAGGGTGCTTCAC GGAGGCAGAGGAACTCGGGCGGAAAGCCAGGGAAATACTCTCAAAAAGCG AACAACAGGGGGGAGGAGAGGGCCCCCCTTCACCAGATGACCAATGACCC CCAGAATGTGTGTATTCAGTGCACATGAAATGGATATATGTGCTTCATGT ATGTTGTATGAGGACTCCGCCCTAGGGCTGGCAGTCCCAGCAATACATAG AGGGATACAGCTGTG back to topprotein sequence of jgi.p|Trimin1|71082 >Trimin1|71082|CE71081_81 ID=Trimin1|71082|CE71081_81|Name=jgi.p|Trimin1|71082|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=232bp
MAMQEAMYGQESAQYAASLYTLATSHASMGHMEEAEALFRRVLSILGPGV HYNAHNLVASCHISLAGMLLSQERDEEALTLLSEAVGMLGTTHPDAAPAM GAYATALLKARREEEALDMATQALNLRTRNGALVDAPECVNLLLVVGHIH RMREEMRQAEEMVRMSLGMAERVFGAESPYTARVMQALSECLRTEPGCFT EAEELGRKAREILSKSEQQGGGEGPPSPDDQ* back to topmRNA from alignment at Contig_48:488225..494770+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_12610 ID=mRNA_12610|Name=jgi.p|Trimin1|71082|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6546bp|location=Sequence derived from alignment at Contig_48:488225..494770+ (Tribonema minus UTEX_B_3156 ) CTGGTGGGCACAGGGTCTCATCAAGAGGCACAGGACACCCTGCAAAGGGC
AATGGCAATGCAGGCAAGTGGCAGCATGCGCTTGCGCATTGCTATGAGGC
TCGGTGCAACGCGCCGTTTCGAGGCAGGCAGGTTGCAGCTTTTCACGCGC
TGATGTTTAGCCTCACTGCAAAGGGCACTGGAAACGCAGCCAACCGCCAG
CATACGTCAGAGCGTTGCCCTCGGGCTCCGTGCAACAGGGCCGCTGAGGG
GGGACAAGTGGCAGCGTCATGGTCATCGGCATAGACGTTGCACTTGGTGC
AATGTGCGCAGCGATTTTGGCCTTCAGCCTGCTGCCCACGTCACACTGTG
CTGCTGCAAGGTGTATTCGGCTGCTGTCGTACAGAGACATTGGCATTGAT
GTCGGACACAAGAGACATACATACATACATACATACATACATACATATTC
ATGATGTAGTATTCATAGGTGCTGAACCTCCTGTGTTGGGCTACCAGCTG
GAGCTGGCCTACCGAACACGTGAGAGCATTCCATACTGAACACCCATGCC
TCAAAGCTAAAAGCTTGCACACACAAGTCTTGAGGCTCCTGTTGATATGG
TGGCACTGTTCGACTGCTGCAGCAGCGGCGACCACGGTTATTGGTGGAAG
GCACTGGTGGCTAATCACGCCTTGTCATCCAAGAGCTCTACGATCTTTTG
GTTTCTTTCCATTCATAGCAGCCCCAAGGTGGGCTCGGTTTGTGGGACCA
TGTGCAAGACACTGAATTCGGCCGACCCCTTGGGACCTTGTGTGGCAGGC
TTGTACTAGACTAATGGGGGGCAGACACAGTGGCACGCAGTGCAGTCGCT
ACCCTAGCAGCCCATGTCTCCGTCTCTAACCCTAACCCTAACCCAAAAAC
GCCGTACAACCTCCACATGGCATTGAAGTCTCACATGGTGTTACTGGTTG
ACTTACTCGTAGACTTGCTGATCATTATCACTGCATCGTTGGGGTTGCAT
CTCATGTTCTCAGCGACTCATGCTCAGTGTGGATTGCTGGCTTGCCGTGC
GTGTGCTCCTTGCTCGTGTTGCAGGAGGCTATGTATGGGCAGGAGTCAGC
ACAGTATGCAGCAAGCCTGTACACTTTGGCCACAAGCCATGCCAGCATGG
GGCATGTAAGTAATGCACGATGTACATATTTACTTACATTACATATACAT
TTACATACATATATACATACAAGCAGGAGTCAGTGCGGTATGCGGCAAGC
CTGTACACTTTGGCCGCAAGCCACGCCAGCATGGGGCATGTAAGTATTGC
ATGGTGTACATCCATATATACACACTTCGAAGTACATGTATGCACAAGTC
AGCTGAGTACTCGACAAAGCCTGTGCAGTTTGGCTGCGAGCTGCGCATAC
TTGCAAGTGCAGTGTTATGCAAAGTGACATCTGTACAGTATAAGTTTTCA
GTGAAAATCACAATGGGCTTGTTCTTTGCACATCGCAGATGGAAGGCGCG
GAAATGCTGTTGCATCCTTTCAAGTAGAAGTAGAAGTATAATCTAACATG
AATGGTGGCTTTTGCGTCAAAGTGTACTTCATATCATAACATACATCACG
ATTGGCTTGTTCTCTGCGCGTTGCAGATGGGAGAGGCAGAGGCCCTGTCG
CATGCTTTCAAGTATAATCTACTTCAAGTTTGTAACATGAATCAAAATTG
GCTCGTTCTTTGCGTGTTTATAACATGAAATCACAATGGGCTCGTTCTCT
GCGCGTTGCAGATGGAAGAGGCAGAGGCCCTGTTCAGGCGGGTACTCTCC
ATACTTGGCCCCGGAGTCCACTACAACGCGCACAACTTGGTGGCCAGCTG
TCACATCTCACTAGCCGGCATGCTGCTCAGTCAGGCAAGCAGCAACACTC
AACTTGTTCACTGGTGATGCTCAGTCAGGCCAACGAACAACAAACCTCAA
CTCACAATTGCAATTGCTCAGTCAGGCAGCAATGCTCGACAAGTATGGCC
CGATCTCCTATGGTGATACTCAGTTTGGCAAGCAGCAACGCCCAACTCGC
AACTATTGTTGATGATGCTCTGTTGATGTCCTCATCCAACAGCAGTACGT
GACCTACTTCGATGATGCTGCTCAATCAGGCAAGCAGCAACGCCCACCCT
ATAGATGTGTAAATGCTCAGTCAGACAAGAAGCGACGCTCCACCTGTTGC
GGTGATGCTCAAGAGTTCACGGCCAGCTGTTCCATCCTATTAGAGGGCAT
AATGCGGTGTCACACAGCAGTGGTGTCTCATCACGTGGCACCTCTCACTT
GGAGTGTAAGTATCAAGTTGACATGTCCAGTGCTGACTTGATCACCATTA
TAGTGTTCACTTCACCGTATAGTGTGGTGGTCTTCAAAAGACAAAGTTTA
CATCACAATACTGGGTTCATGCAGCTTAGGGCAGATTCAAGTAGTTTGTA
TCAACGCTGAAAGCTGCTGCTGGATGCTATGCAGTAGACCTGCTTAGAGA
GCCCACAAATCCGCGTCATCATGTGTTTGCATCAACCTTTTACGGTACGT
GAGGTACATGAATGAGTAGGTAGTCTAATCGACGACGGATTTGCCAATGG
GCGCCATCCACTGTGTAGCCATGCTCTACTGGTTGATCATGTGTCATTCT
CGTGCAGCGCAGCCGCTCCACTGCGTGCATCTGCCGCAACGGACGCATTC
ATATGAGGTCGGCACTATTGCCGCAGCTAAACCCGATATTACCCATGATG
ACGTGCACAATCTATATATACCCTTGCTCTTGGAGCGCTGACATGCATGA
TTGCAGCCGGCCATTGTACAGGGACGCAATCAGCTGGCCCTTTCTCCCAT
GCATACGCCTGCTCCAACCCCATCACGCCAACACTTGCTTAGCTGGTACC
ATCGGCGCGGCCCATCCCTGTACTCGCAGAGCGCTCTTGTTGTTGGCTGC
ATCATGTTTCTTGAAACTGTGAGGTTTGAAAGCTATATGTCTCACCGTCC
GTTAAGGTATCAGTTTTAATTGTCGGTTTCGCTCCGTTTTTGGCCGTTTT
TCTGAGTGCTGACACGCATCATTGCGGTCACCTTGTCACCTTTATACAGG
AACGGGACGAGGAGGCCCTTACTCTGCTCTCAGAAGCGGTAGGTATGCTG
GGCACCACGCATCCCGACGCTGCTCCCGCCATGGGCGCGTACGCTACGGC
GTTGTTGAAGGCGCGGCGAGAGGAGGAAGCGCTCGACATGGCCACGCAGG
CGCTGAACCTCAGGTATGTACACAAGGGTTTGAGCAGTGAAATGCAGTGG
CGGCGTGTTCTGTTGTACTTACATTTGAGCAGTGACATGCAGCGGCTGCG
TGTTCTGCCGTACTTCAAGTAGAAGTGACATGCGACACCAATGGGCGCGT
AATCTACGACCTTGCTGGAAGCGCACCGAGAGGAGGAAGCGCTTGATCTG
GCCACACAGACTCTGAGCCTGCGGTGAGTTCTTGTGGGATACTTGCTGGC
AGACAGATGCACCGTGTTTGGTTATACTGTGATTCATGCTGAGCGCGTGC
GCCGCTGCCTTGTTCAAGGTGCGGCGAGAGGAGGCAGCGCTCGACACGGC
CGCACAAGTGCTGACACACACTGAGCAAGAAGCACTGACATGTGTCAGCG
AATGGTAGCTAGACGTAGCAGCAGCGGCGGTGCTGGTCACACTTCAAGTA
GATGGGTCCGACATGCTGCGAGCATGGGCGCACATGTTACAGCAGCGCTC
AAGGCGCGTTGAGAAGAGGAAGCAATCAACGGCCATGGCCATGCAGCTTG
TAAATCATAAGGCATGCATGCCGTGCGAACTGCGCGGACTCGTTTGTACT
TATGATCTTGTATTTATAGCAGCCCCAAGGTGGGCTTGATGCGTTGGATA
AGATTGCAAAAAACTAAAATCGGACGGGCCCTTAGAGCCCTGCGTTGCAG
GCTTGTACTAAACTCATGGGGGGTAGACACAGCGGCACCCAGTCTGAGCC
ACACCTATCGTAGCCGATGTCTCCATCTCTTGAGCGAAAACGCCGGAGGA
CCGCGGTTATGCCTCTAGTATACATTTGGGCCAGAGGCGCCCGGTCCTCG
ATTCCTTGCCTAAGCACGCCGCTGACGTGCCTGGCCGAGGTTCTCTTTCT
TGCGTGTTCAAGCAAACGATCTACAGTGTGCCCTGATGCTATCCGCATCC
CCATGTTCCAATATCCCCTGCTGCTGCCCAAAGCCGTATCCTCACCACAC
GCGACTCCGCAGCTCCTGCTCACAGTCAGAGCCAGCATCTCCCATCCCCT
AGCTGCCTGATGCACCCTCGCCACCATCAGCGCCACCGCAAGCGCTGCCG
CACCTCTCGGTGCTAACGAGCAGCACACGTTTGTACTTCCGGAGTGCTGG
CTGAATTGAAGTACCTGAGCTTCTTCCTCGCCGTGCACATGTGCAACTAG
TGTGCTGATTGCAAACCACCTGCGAGGTCCGCTGCGCGTTGAACGAGGCT
GTTCAGTACAAGCTGTTAGAGTGCATTAATTTTCAGATTACCACTCAGGA
GTATATACTTCAAGTATTGAGAATGGAACCCATCGTCCATGTCGCTGTCA
CGCATCTGTACTGCAGGACAAGGAACGGTGCATTGGTGGATGCGCCCGAG
TGCGTGAACCTGCTTCTGGTGGTTGGCCACATTCACCGAATGCGGGTGAG
CTTCTGCAGGTTTAGGGTTAGGGTTAGGGTAAGCCTATCCCTTATATTGA
ACCCAACCCCTCTGTAGAGATGGGAGAGCCCGTATCGTGTAGCGCGGAAT
CCTCGTCCATGGCATTAGACTTCTCGCTGCCTGTACCCAACAAAGGTGCA
GCGCATGCTGCGCTACCAGTTTCTTCAATGCCTCCAGTGGCTCGTGGAGC
CGCAGTCTGCTATTATCGCCCCGCAGCAGAATTGGTACTGTTGTCAAGCT
TTGGCAATGTTTCAGCCAGAGTACTGTTACTTCACTCAAAACGTCCGGAA
ATTGCTGATCATTCCCAATTGTTTTTGTTGTCAAGCTTTGACAATGTTTC
AGCCAGAGTACTGTTATTTCAGTCAAATAGTCAGGAAATTGCTGATCACT
CCGAGTTTGCCTTCTGTTCATGAGCCTCATGTTGCGGCGTACACCTTTGT
AATAAGGGGGTGCTGATTTGCGATGCTGTGCCTGATGCACCTGTGAAGCA
CTGTTCATGTGGAGATGCAGTCCCAGTTGCACAGTACCAGCCTACCCATC
CATGGACTTCACCGCGCTGCTTAAATGTACTTGTATTTATTTCGCTTGAG
GGGCAAAAACCCGTGGACGTCCTGCGTGAGGCTAGGGTTAGGGTTATGTC
AGGGTTAGGGATGAGGCCCATGCACAACCCCGCCGCCACTTGCTGCAAAT
CCATTTAGGGTGCCTCAGAGTGCAACTCCTCTCTTCCGGTTGGCGCAGGA
GGAAATGCGGCAAGCGGAGGAAATGGTGCGCATGTCCTTGTCCTGAGAGG
CATGGCTGAAGGGTTAGGTTTAGGTTAGCTTAGGGCTAGGGTTAGGGGAA
TGGTCGGGCATGCACGACGCCACCACTTGCTGCGGGTTTTATTTAGGGTG
CCTCACAGTGCACCTTCTCTTTCCTTGTTTTGCAGGAAGAAATGCGGCAA
GCAGAGGAAATGGTGCGCATGTCTCTGGGCATGGCCGAGCGAGTGTTTGG
CGCGGAATCGCCATACACAGCAAGGTCAGTCTTGTACACTTGGCAGCAGA
GTGCACTTGCGTGCAGTTGCTTTGTAGGCTTTGTGATCAACAATTGATGG
TTTGGGCGTGTGGTCACCTTGTTTGCTTTTTGATTGCTTCAGCAGTTGTC
AATTGCTCCAAAAGTGCTTCAGGTACTGGAGTACTTCAAGGTGTGTGTTT
GCTTTTTTCATTGCTTCAACAGTTGTCAATTGCTCAACAGTGCTTTAGGT
GCTGGAGTACTTGAAGGTGTGCGTATTGATCACATCAGGCTCGTGTTTTT
AGCTGAACAGACCTGCACAAGCTCTCCACCCTGCAGTCACACAGCAAGGG
CGGCGGATTGCATTCTAGTGTTGAGCATCAGCTGCAGAGGAGTGGAGCGC
AGCGTTGCTGCACATGCGCCTCTGATGATGCTGTCACAGCTAAAGCAGTG
CTCGCCGCGGATTCACGTTGTTTGCAGTTTATGCATAAACTGCCATGCAC
TCTCATCTATGAACTGGTGTTTGCAATTGACATTCCACTCACAAAGCGCT
GCTCGCTGCTGGTGTGCACTGGTCTCACAGGGTCATGCAAGCCCTGTCAG
AGTGCCTCAGGACAGAGCCAGGGTGCTTCACGGAGGCAGAGGAACTCGGG
CGGAAAGCCAGGGAAATACTCTCAAAAAGCGAACAACAGGGGGGAGGAGA
GGGCCCCCCTTCACCAGATGACCAATGACCCCCAGAATGTGTGTATTCAG
TGCACATGAAATGGATATATGTGCTTCATGTATGTTGTATGAGGACTCCG
CCCTAGGGCTGGCAGTCCCAGCAATACATAGAGGGATACAGCTGTG back to topCoding sequence (CDS) from alignment at Contig_48:488225..494770+ >mRNA_12610 ID=mRNA_12610|Name=jgi.p|Trimin1|71082|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=696bp|location=Sequence derived from alignment at Contig_48:488225..494770+ (Tribonema minus UTEX_B_3156 ) ATGGCAATGCAGGAGGCTATGTATGGGCAGGAGTCAGCACAGTATGCAGC AAGCCTGTACACTTTGGCCACAAGCCATGCCAGCATGGGGCATATGGAAG AGGCAGAGGCCCTGTTCAGGCGGGTACTCTCCATACTTGGCCCCGGAGTC CACTACAACGCGCACAACTTGGTGGCCAGCTGTCACATCTCACTAGCCGG CATGCTGCTCAGTCAGGAACGGGACGAGGAGGCCCTTACTCTGCTCTCAG AAGCGGTAGGTATGCTGGGCACCACGCATCCCGACGCTGCTCCCGCCATG GGCGCGTACGCTACGGCGTTGTTGAAGGCGCGGCGAGAGGAGGAAGCGCT CGACATGGCCACGCAGGCGCTGAACCTCAGGACAAGGAACGGTGCATTGG TGGATGCGCCCGAGTGCGTGAACCTGCTTCTGGTGGTTGGCCACATTCAC CGAATGCGGGAAGAAATGCGGCAAGCAGAGGAAATGGTGCGCATGTCTCT GGGCATGGCCGAGCGAGTGTTTGGCGCGGAATCGCCATACACAGCAAGGG TCATGCAAGCCCTGTCAGAGTGCCTCAGGACAGAGCCAGGGTGCTTCACG GAGGCAGAGGAACTCGGGCGGAAAGCCAGGGAAATACTCTCAAAAAGCGA ACAACAGGGGGGAGGAGAGGGCCCCCCTTCACCAGATGACCAATGA back to top
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