mRNA_1257 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131007
Unique NamemRNA_1257
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|131007 vs. uniprot
Match: A0A835Z740_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z740_9STRA)

HSP 1 Score: 333 bits (854), Expect = 6.420e-116
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 
Query:    1 VLCDLCTAVKQQKKDLLVLELVPPEDAAAAALNAVTPRSGRSFDRAHLLDTDGPRCNEAIDDRVTFRDAQICGQLQTDTLGAAIYTSAKVIYTLHRPLEQALNPVCRKCDTPIVTVRHYCGACSTSMSHDLCGECSCKLNGTCEVGHRTAPFETPFCLS 477
            VLCDLCTAVKQQKKDLLVLELVPPEDAAAAALNAVTPRSGRSFDRAHLLDTDGPRCNEAIDDRVTFRDAQICGQLQTDTLGAAIYTSAKVIYTLHRPLEQALNPVCRKCDTPIVTVRHYCGACSTSMSHDLCGECSCKLNGTCEVGHRTAPFETPFCLS
Sbjct:    1 VLCDLCTAVKQQKKDLLVLELVPPEDAAAAALNAVTPRSGRSFDRAHLLDTDGPRCNEAIDDRVTFRDAQICGQLQTDTLGAAIYTSAKVIYTLHRPLEQALNPVCRKCDTPIVTVRHYCGACSTSMSHDLCGECSCKLNGTCEVGHRTAPFETPFCLS 159
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BLAST of jgi.p|Trimin1|131007 vs. uniprot
Match: A0A835YIA2_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIA2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 9.650e-43
Identity = 86/163 (52.76%), Postives = 105/163 (64.42%), Query Frame = 1 
Query:    1 VLCDLCTAVKQQKKDLLVLELVPPE----DAAAAALNAVTPRSGRSFDRAHLLDTDGPRCNEAIDDRVTFRDAQICGQLQTDTLGAAIYTSAKVIYTLHRPLEQALNPVCRKCDTPIVTVRHYCGACSTSMSHDLCGECSCKLNGTCEVGHRTAPFETPFCLS 477
            +L ++C  V   + DLLV +L PP     DA+ AA  A  P SGR F  + LLDTDGPR NEA+DDR  F  AQ   QLQ DTLG AI ++A++IY LH PL++ALN +CR+C +PI    HYC ACS    H LC  CS KL+G CE GHRTAP  T F L+
Sbjct:  786 MLDNMCELVHANRADLLVWQLTPPNAPLLDASWAAA-AAAPCSGRRFVPSQLLDTDGPRANEAVDDRQRFIVAQSWHQLQFDTLGGAINSTARIIYALHCPLKRALNRLCRRCKSPITKRHHYCDACSAYGCHSLCDTCSSKLDGKCEAGHRTAPLATSFRLT 947
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BLAST of jgi.p|Trimin1|131007 vs. uniprot
Match: A0A835Z6R2_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.190e-10
Identity = 39/117 (33.33%), Postives = 49/117 (41.88%), Query Frame = 1 
Query:  127 FDRAHLLDTDGPRCNEAIDDRVTFRDAQICGQLQTDTLGAAIYTSAKVIYTLHRPLEQALNPVCRKCDTPIVTVRHYCGACSTSMSHDLCGECSCKLNGTCEVGHRTAPFETPFCLS 477
             D   L D D  R  E ++ R  F                A + +A ++Y  H    Q LNP+CRKCD PIV   H+C  CS       C  CS +L   C   H T P  + F LS
Sbjct:  254 MDPVRLADPDVKRSFEPLNSRKHFIAICSVNGFHFSIRAFAAHATAMLLYAQHHAERQTLNPLCRKCDKPIVGTFHHCNECSIGPPCQFCSACSQELGAMCPQKHLTVPCCSKFQLS 370
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131007 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z740_9STRA6.420e-116100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YIA2_9STRA9.650e-4352.76Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A835Z6R2_9STRA1.190e-1033.33Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:165108..165935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131007|gw1.18.32.1
Hectar predicted targeting categoryother localisation
TranscriptId131329
TrackFilteredModels1
ProteinId131007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131007gene_1257Tribonema minus UTEX_B_3156 geneContig_18 165108..165935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131007Trimin1|131007|gw1.18.32.1Tribonema minus UTEX_B_3156 polypeptideContig_18 165108..165935 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1257_2exon_1257_2Tribonema minus UTEX_B_3156 exonContig_18 165108..165194 -
exon_1257_1exon_1257_1Tribonema minus UTEX_B_3156 exonContig_18 165546..165935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1257CDS_1257Tribonema minus UTEX_B_3156 CDSContig_18 165546..165935 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1257 ID=mRNA_1257|Name=jgi.p|Trimin1|131007|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=477bp|location=Sequence derived from alignment at Contig_18:165108..165935- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCTGTGCGACCTCTGCACCGCTGTGAAGCAGCAGAAGAAGGACCTGCT
GGTACTGGAGCTAGTACCGCCGGAGGACGCGGCCGCTGCTGCGCTGAACG
CTGTGACGCCGCGCTCCGGCCGCAGCTTCGACCGCGCTCACCTTCTCGAC
ACTGACGGGCCGCGCTGCAACGAGGCGATAGACGACCGCGTCACCTTCCG
CGACGCGCAGATCTGCGGGCAGCTGCAGACGGACACGCTCGGCGCGGCTA
TCTACACCAGCGCGAAAGTAATCTACACGCTGCACCGGCCGCTCGAGCAG
GCGCTCAATCCTGTCTGCCGCAAGTGCGACACGCCCATCGTGACGGTGCG
GCACTACTGCGGCGCGTGCTCCACTTCCATGTCCCACGACCTGTGCGGCG
AGTGCAGCTGCAAGCTAAACGGCACCTGCGAGGTGGGGCACCGGACTGCG
CCATTCGAGACCCCCTTCTGCCTCAGC
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protein sequence of jgi.p|Trimin1|131007

>Trimin1|131007|gw1.18.32.1 ID=Trimin1|131007|gw1.18.32.1|Name=jgi.p|Trimin1|131007|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=159bp
VLCDLCTAVKQQKKDLLVLELVPPEDAAAAALNAVTPRSGRSFDRAHLLD
TDGPRCNEAIDDRVTFRDAQICGQLQTDTLGAAIYTSAKVIYTLHRPLEQ
ALNPVCRKCDTPIVTVRHYCGACSTSMSHDLCGECSCKLNGTCEVGHRTA
PFETPFCLS
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mRNA from alignment at Contig_18:165108..165935-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1257 ID=mRNA_1257|Name=jgi.p|Trimin1|131007|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_18:165108..165935- (Tribonema minus UTEX_B_3156 )
GTGCTGTGCGACCTCTGCACCGCTGTGAAGCAGCAGAAGAAGGACCTGCT
GGTACTGGAGCTAGTACCGCCGGAGGACGCGGCCGCTGCTGCGCTGAACG
CTGTGACGCCGCGCTCCGGCCGCAGCTTCGACCGCGCTCACCTTCTCGAC
ACTGACGGGCCGCGCTGCAACGAGGCGATAGACGACCGCGTCACCTTCCG
CGACGCGCAGATCTGCGGGCAGCTGCAGACGGACACGCTCGGCGCGGCTA
TCTACACCAGCGCGAAAGTAATCTACACGCTGCACCGGCCGCTCGAGCAG
GCGCTCAATCCTGTCTGCCGCAAGTGCGACACGCCCATCGTGACGGTGCG
GCACTACTGCGGCGCGTGCTCCACTTCCATGTCCCACGACGTGAGTGCGC
TGCGTGCCCGCCTAGGCCTGCATAGAAGAAGGTGTTGATAGTATATGGCA
TTGTGTATTGCAGTGCATTCAATGTGTGATTTGCTGTGAAACGTGTCTAG
CTGTGAAATGTCGCGGGCACCAGTACACCACCAGAGTGCTCGACTATCTG
CAGGCAAAACTTCAAGTGTGAAGTGCGGCTCTCACACCTGACGTGCACAC
AGGGCGCCTGTTTTGCTCTACAGTCCCTAACAGGTTAGCTCACTGCCACA
TACCGTCGTGTGCTTCACTACATTACCTACCCACATCTGCCATCTCTCAT
ACTGCAGCGCCCGCCCCTTCTCCGCCCGTCCCCTCATGCAGCTGTGCGGC
GAGTGCAGCTGCAAGCTAAACGGCACCTGCGAGGTGGGGCACCGGACTGC
GCCATTCGAGACCCCCTTCTGCCTCAGC
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Coding sequence (CDS) from alignment at Contig_18:165108..165935-

>mRNA_1257 ID=mRNA_1257|Name=jgi.p|Trimin1|131007|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=477bp|location=Sequence derived from alignment at Contig_18:165108..165935- (Tribonema minus UTEX_B_3156 )
GTGCTGTGCGACCTCTGCACCGCTGTGAAGCAGCAGAAGAAGGACCTGCT
GGTACTGGAGCTAGTACCGCCGGAGGACGCGGCCGCTGCTGCGCTGAACG
CTGTGACGCCGCGCTCCGGCCGCAGCTTCGACCGCGCTCACCTTCTCGAC
ACTGACGGGCCGCGCTGCAACGAGGCGATAGACGACCGCGTCACCTTCCG
CGACGCGCAGATCTGCGGGCAGCTGCAGACGGACACGCTCGGCGCGGCTA
TCTACACCAGCGCGAAAGTAATCTACACGCTGCACCGGCCGCTCGAGCAG
GCGCTCAATCCTGTCTGCCGCAAGTGCGACACGCCCATCGTGACGGTGCG
GCACTACTGCGGCGCGTGCTCCACTTCCATGTCCCACGACCTGTGCGGCG
AGTGCAGCTGCAAGCTAAACGGCACCTGCGAGGTGGGGCACCGGACTGCG
CCATTCGAGACCCCCTTCTGCCTCAGC
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