mRNA_12571 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|70829
Unique NamemRNA_12571
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|70829 vs. uniprot
Match: A0A835YRW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW7_9STRA)

HSP 1 Score: 172 bits (437), Expect = 7.390e-54
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:   82 MENVDLTQVPNQLGTAVLKASTGAVVRATGDLASQESSVIATLYRIVQDTGGLLCGDPLKLITVSFNSYSYVVALGGGMVYIVKKQPEE 348
            MENVDLTQVPNQLGTAVLKASTGAVVRATGDLASQESSVIATLYRIVQDTGGLLCGDPLKLITVSFNSYSYVVALGGGMVYIVKKQPEE
Sbjct:    1 MENVDLTQVPNQLGTAVLKASTGAVVRATGDLASQESSVIATLYRIVQDTGGLLCGDPLKLITVSFNSYSYVVALGGGMVYIVKKQPEE 89
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BLAST of jgi.p|Trimin1|70829 vs. uniprot
Match: A0A7S2S4A7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4A7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.400e-13
Identity = 33/76 (43.42%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:  121 GTAVLKASTGAVVRATGDLASQESS-VIATLYRIVQDTGGLLCGDPLKLITVSFNSYSYVVALGGGMVYIVKKQPE 345
            GTA L+AS GAV++ +GDLAS+E   ++ + Y ++Q +G +L  +P++ +TV+F ++SY VA+ GG++YI K   E
Sbjct:   23 GTAALRASDGAVLKTSGDLASKEGQGLLPSFYAMLQASGSILKDEPMRKLTVNFETHSYAVAVSGGVIYIAKSPNE 98
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BLAST of jgi.p|Trimin1|70829 vs. uniprot
Match: A0A0L0FPG4_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPG4_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 3.390e-8
Identity = 30/86 (34.88%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:   85 ENVDLTQVPNQLGTAVLKASTGAVVRATGDLASQESSVIATLYRIVQDTGGLLCGDPLKLITVSFNSYSYVVALGG--GMVYIVKK 336
            +++DL +V +Q+GT ++    G V+ ++GDL     ++ +T+  I+ DTG +L G PLK + ++++++ YV+ LGG  G +Y+VK+
Sbjct:    5 QSIDLQRVTDQVGTMIISRG-GDVLSSSGDL--DGPNIQSTMIGILHDTGCVLDGAPLKRVCLTYDTFEYVLTLGGERGDIYVVKR 87
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BLAST of jgi.p|Trimin1|70829 vs. uniprot
Match: A0A5D6YJ19_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YJ19_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.150e-7
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:   97 LTQVPNQLGTAVLKASTGAVVRATGDLASQESSVIA-TLYRIVQDTGGLLCG---DPLKLITVSFNSYSYVVALGGGMVYIVKK 336
            LT V  Q+GT VL    G V+ ATG LA       A +++ I+QD   +L G   + L+ +T+SF SYSYVVA+ G  +Y+VK+
Sbjct:  583 LTAVQGQVGTLVLDLE-GQVLSATGQLAGDAGEQAAESVFSILQDAASVLEGAKNEVLERVTISFPSYSYVVAVNGSEIYVVKR 665
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|70829 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YRW7_9STRA7.390e-54100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S4A7_9STRA2.400e-1343.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0L0FPG4_9EUKA3.390e-834.88Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
A0A5D6YJ19_9STRA5.150e-742.86Fibronectin type-III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_48contigContig_48:15573..17065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|70829|CE70828_40
Max annot lvl4776|Peronosporales
EggNOG OGs2F0Q1@1|root,2T1U9@2759|Eukaryota,3QIAS@4776|Peronosporales
Evalue1.3e-06
Seed ortholog4792.ETI54822
Hectar predicted targeting categoryother localisation
TranscriptId71151
TrackFilteredModels1
ProteinId70829
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|70829gene_12571Tribonema minus UTEX_B_3156 geneContig_48 15573..17065 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12571_2exon_12571_2Tribonema minus UTEX_B_3156 exonContig_48 15573..15735 -
exon_12571_1exon_12571_1Tribonema minus UTEX_B_3156 exonContig_48 16841..17065 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12571UTR3_12571Tribonema minus UTEX_B_3156 three_prime_UTRContig_48 15573..15609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12571CDS_12571Tribonema minus UTEX_B_3156 CDSContig_48 16841..16984 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12571UTR5_12571Tribonema minus UTEX_B_3156 five_prime_UTRContig_48 16985..17065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|70829Trimin1|70829|CE70828_40Tribonema minus UTEX_B_3156 polypeptideContig_48 15610..16984 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12571 ID=mRNA_12571|Name=jgi.p|Trimin1|70829|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=388bp|location=Sequence derived from alignment at Contig_48:15573..17065- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGGCTGCACAGGTGGCTAGGATTGCGAGGCAGGCTGCTCTGACTTCGGA
CGTTGATTGCATAACATCTGGATTGCTGCTCATGGAGAATGTCGATTTGA
CACAAGTGCCAAACCAACTGGGGACTGCTGTGCTCAAGGCGTCTACGGGT
GCGGTGGTGAGGGCGACAGGAGATCTGGCATCACAAGAATCATCGGTGAT
CGCCACGCTTTATCGCATAGTACAGGACACAGGAGGGCTGCTATGTGGGG
ATCCTCTCAAGCTCATTACCGTCAGCTTTAACTCCTACTCATATGTGGTG
GCATTGGGAGGCGGCATGGTATATATTGTAAAGAAGCAACCTGAAGAATA
GCAGTACAGTCTGGATAATAGCACTTTTTTGTCATTAA
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protein sequence of jgi.p|Trimin1|70829

>Trimin1|70829|CE70828_40 ID=Trimin1|70829|CE70828_40|Name=jgi.p|Trimin1|70829|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=90bp
MENVDLTQVPNQLGTAVLKASTGAVVRATGDLASQESSVIATLYRIVQDT
GGLLCGDPLKLITVSFNSYSYVVALGGGMVYIVKKQPEE*
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mRNA from alignment at Contig_48:15573..17065-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12571 ID=mRNA_12571|Name=jgi.p|Trimin1|70829|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1493bp|location=Sequence derived from alignment at Contig_48:15573..17065- (Tribonema minus UTEX_B_3156 )
CTGGCTGCACAGGTGGCTAGGATTGCGAGGCAGGCTGCTCTGACTTCGGA
CGTTGATTGCATAACATCTGGATTGCTGCTCATGGAGAATGTCGATTTGA
CACAAGTGCCAAACCAACTGGGGACTGCTGTGCTCAAGGCGTCTACGGGT
GCGGTGGTGAGGGCGACAGGAGATCTGGCATCACAAGAATCATCGGTGAT
CGCCACGCTTTATCGCATAGTACAGGTACGCGCATGTTGGCGATGCTAGG
CTTTCCCACAACACCGAAGACTTGCGGGTATCCAATCGCACTACAGTTTG
TTTTGGTCCAGCAAGCGTGCAGATTCATGACACACCTTTGACCAACATGC
AGGCAACGCGCAAACATGATTATCAAGCTACTCTCCGCGCACGAGTTGAT
AACTTTGTGACAGTAGGTCCAAGTTCAGGGGTTAGCAGCATCAGTGACGA
TGTTGATGTTCCTCAGAGCATGTAGCAAGTTGAGCCCCAACACAAACTAG
GCGCCCAACCTGATCCGTGACACAGTAGGCGCCAAACAATAGGCGCCCAA
TCTGATTTGTGTGGCCATTTGTCAGTGAGCCATTTTGTCGACGAGCTGTC
AACTGCGCATGCACACTCACACAAATATGAACGACGACTGCACAATGCGG
CAAACAGACTGCCTAAGTACACCAAACCTCCATAGTCTCGTGACACAGCG
GGATCGAATCACTCTTCGAGTGTGGTGGGAGATAAATATCCCCGTCGTGT
CCTCACACCGAGACCTCCACATTGTGACGCGGTCCTGTGCTCAGCAATCA
GCTTCTCTCTTTGCATTGTGATGTAGAGCTGCAATGTTCATTGGCTCACA
GCATGGCATGTCAGCACGTATTTGAGATTCACCAGGACGTTCAGTCGCTG
AAGTACTGTGCAAGGCCTGGTGTGAATTAGCCGGTCGTAGTGAATCATTC
GTGCTGTCACGGTCGACTTGCTGCAAAGCCAACAGACAGCAGCGCTGAGA
CCTTGCAGCTGGTGACTGCTTGCGCAGCTTGCTGTCAATAACCGGGTCTA
TAGCCTGCACCACTTTCTTATAGGCAGATGCAACACCCAAAGCAATCACT
CGGCATCTCATTACTCGCGAACACCCCTGAGACCCCTGCCATGTTTTCTT
GAGTCTTGTGAACAACATGCACTCAGGCTGTTTTTGGTCCAGCTAGCACG
GCTGCAGTCATCGTTAGATCATCGTCATCACCAAGGCCCTGATTCCATAA
GCTTGCCTGCCCCATTTCAAAGCACACCTGTGAACTCTCCCATTCTGCCT
GCTTTTGTGATTTCCGCCCTATCGCAACAGGACACAGGAGGGCTGCTATG
TGGGGATCCTCTCAAGCTCATTACCGTCAGCTTTAACTCCTACTCATATG
TGGTGGCATTGGGAGGCGGCATGGTATATATTGTAAAGAAGCAACCTGAA
GAATAGCAGTACAGTCTGGATAATAGCACTTTTTTGTCATTAA
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Coding sequence (CDS) from alignment at Contig_48:15573..17065-

>mRNA_12571 ID=mRNA_12571|Name=jgi.p|Trimin1|70829|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=270bp|location=Sequence derived from alignment at Contig_48:15573..17065- (Tribonema minus UTEX_B_3156 )
ATGGAGAATGTCGATTTGACACAAGTGCCAAACCAACTGGGGACTGCTGT
GCTCAAGGCGTCTACGGGTGCGGTGGTGAGGGCGACAGGAGATCTGGCAT
CACAAGAATCATCGGTGATCGCCACGCTTTATCGCATAGTACAGGACACA
GGAGGGCTGCTATGTGGGGATCCTCTCAAGCTCATTACCGTCAGCTTTAA
CTCCTACTCATATGTGGTGGCATTGGGAGGCGGCATGGTATATATTGTAA
AGAAGCAACCTGAAGAATAG
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