mRNA_12548 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351027
Unique NamemRNA_12548
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A835YJN1_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJN1_9STRA)

HSP 1 Score: 720 bits (1859), Expect = 1.470e-257
Identity = 468/468 (100.00%), Postives = 468/468 (100.00%), Query Frame = 1
Query:    1 MSTASASSDGGGGQAAYVLRPLKKRPLSDNAPPGSSARSTASTCSYXXXXXXXGSGDDGNSTDDDARHQQHEQGACSKRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAILQQRAASPSXXXXXXXXXXXXPLPPHTAEADSKPARMAPSPTPQQAYAGSRSPCRKQMAIARPASAASSGASPSAACLAPPLVPLAVLPVAPSAATKLPMVTAQAPAGAEYGSVPAHMYAHYPIYPPHAAAYVAAAGALLPGIYGXXXXXXXXXXALPAHVLQAHAFDMQGRYAAXXXXXXXXXXXXXXXXXXXXXXXXXHPYAAAYYQYHQ 1404
            MSTASASSDGGGGQAAYVLRPLKKRPLSDNAPPGSSARSTASTCSYXXXXXXXGSGDDGNSTDDDARHQQHEQGACSKRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAILQQRAASPSXXXXXXXXXXXXPLPPHTAEADSKPARMAPSPTPQQAYAGSRSPCRKQMAIARPASAASSGASPSAACLAPPLVPLAVLPVAPSAATKLPMVTAQAPAGAEYGSVPAHMYAHYPIYPPHAAAYVAAAGALLPGIYGXXXXXXXXXXALPAHVLQAHAFDMQGRYAAXXXXXXXXXXXXXXXXXXXXXXXXXHPYAAAYYQYHQ
Sbjct:    1 MSTASASSDGGGGQAAYVLRPLKKRPLSDNAPPGSSARSTASTCSYXXXXXXXGSGDDGNSTDDDARHQQHEQGACSKRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAILQQRAASPSXXXXXXXXXXXXPLPPHTAEADSKPARMAPSPTPQQAYAGSRSPCRKQMAIARPASAASSGASPSAACLAPPLVPLAVLPVAPSAATKLPMVTAQAPAGAEYGSVPAHMYAHYPIYPPHAAAYVAAAGALLPGIYGXXXXXXXXXXALPAHVLQAHAFDMQGRYAAXXXXXXXXXXXXXXXXXXXXXXXXXHPYAAAYYQYHQ 468          
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S2REX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REX0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.720e-15
Identity = 79/187 (42.25%), Postives = 107/187 (57.22%), Query Frame = 1
Query:  220 GACSKRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCA---GTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAIL 771
            G   KR +LS +++L  SRERNR+HA+KTRQRKK ++  LQAR  +LK E   L++ VDER TA +LL +    E   G +  S      S+  +   +A  A   G D D+      D+ E   + P   +    + TP ERE IRRERNR+HAKRTR RKKL  ++ ER+I V E+   +LR  L
Sbjct:  183 GDSKKRRRLSSEERLQRSRERNRMHAKKTRQRKKMQIEALQARIDELKTEFLGLRQIVDERYTAYILLVMSGAAENGSGASFLSSSAEGPSTLGSKFTSASLAQIIGRDPDAE-----DDKE---EAPQKRTRRRGKYTPAEREHIRRERNRMHAKRTRDRKKLFLEESERKIAVMEEENAKLRDFL 361          
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S2RAP5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAP5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.770e-11
Identity = 75/194 (38.66%), Postives = 101/194 (52.06%), Query Frame = 1
Query:  220 GACSKRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEG------TDG-------------ETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEK 744
            G  SKR KL+ + +L  SRERNR+HA+KTRQRKK ++  LQ    QLK E   L   +DER  A  LL + +  EG      TDG             E G+S  +   +   ++   AG  G  ++       +  E+   L   +  D S+ TP+E EQIRRERNR+HAKRTR RKK   +D++  I   EK
Sbjct:  305 GDPSKRIKLTSEQRLERSRERNRIHARKTRQRKKQQMERLQDTVDQLKLENVALTRELDERIAAIKLLVMRSPDEGDDLLAITDGGYRDSEPSADSLSEGGSSTSKNDHTDTGSS--MAGDEGIQLNGMILGVAEMAEMDIDLEL-MKKDRSQCTPEELEQIRRERNRMHAKRTRVRKKAQLEDIQETIASLEK 495          
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S4AQ14_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AQ14_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.160e-10
Identity = 64/196 (32.65%), Postives = 93/196 (47.45%), Query Frame = 1
Query:  241 KLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPA-----------H--------------------------LSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDL 717
            K +H +++  SRERNR+HA+KTRQRKK +L  LQ +A QLK EQ +L+  ++E+ TA++L  L +  +G+        R                    V++      +E+    KLPA           H                          L  D S+ TP E +QIRRERNR+HAKRTR RK+L  +++
Sbjct:   51 KRNHGERMKRSRERNRIHARKTRQRKKEQLQSLQTKAEQLKGEQINLKLCINEKNTANILCCLLSNNQGSQSSCAEDPR--------------------VEALLTRPEEEIPDPSKLPALQPLILPSGAQHSKRSNNNINDNLQSQQPPNDGIDYELLGKDRSKCTPAELDQIRRERNRMHAKRTRDRKRLFMEEM 226          
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A6U5IV75_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5IV75_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.280e-9
Identity = 67/190 (35.26%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  253 DDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTG--PEG-------TDGETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCD--LSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAILQQRAAS 789
            +++LA SRERNR HA++TR RKKA+L  LQ RAR+L+ E  +L+++++E + A++LL L +   PE        ++      V  G    A +  D+   A     +      ++  +  K   +   D    +LTP E E +RRERNR+HAK TR RKK+    +++ I + E   RR+R +L + AAS
Sbjct:   36 EERLARSRERNREHARRTRLRKKAQLRILQDRARELQNENSNLKQSIEECSIANILLGLSSNVCPESIPQLSLSSESTPTPPVIFGKRKRAVSDADSDSTARKAAMASIPGLSNKNHINWKTGYYTDTDGNQKQLTPSELENLRRERNRMHAKMTRDRKKVFIASIDQTISLLEAENRRMREVLSKCAAS 225          
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: BZP14_PHATC (bZIP transcription factor 14 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=BZP14_PHATC)

HSP 1 Score: 69.3 bits (168), Expect = 7.430e-9
Identity = 70/213 (32.86%), Postives = 106/213 (49.77%), Query Frame = 1
Query:  241 KLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDG------------------------ETGASVRRGSCSS----------AAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAH--LSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAIL 771
            K   DD++  SRERNR+HA+KTRQRKK ++  L+ RA  LK EQ  L++ ++E+ TA++L+ L +  +                            E  A +  G  +S          AA+    +   G +V S      DE ++ D    +  L  D S+ TP+E +QIRRERNR+HAKRTR RK++  +++    R+ E+    LR  L
Sbjct:  113 KADTDDRVQRSRERNRIHARKTRQRKKEQMQSLEGRATDLKHEQIRLKQIINEKNTANILVGLFSKGQSQSPNEDPRVEALMYRSVEEIPDPSKIPELPALILPGQHASKKIKVAVPVVAASPQSMSDGGGEEVASTSDVSGDEQQVPDDGIDYDLLGKDRSKCTPEELDQIRRERNRMHAKRTRDRKRIFTEEMAEMCRILEEENHLLRVHL 325          
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S4VPU5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPU5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.290e-8
Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  268 ASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCA-----------------GTDVDSXXXXXXDEVELLDKLPAH-----------LSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLE 720
            ASRERNR+HA+KTRQRKK  + +LQ RA +LK +Q  L++ + E+ TA++LL +    +G  G+    V      SA    DA+                    GT   +       + E +  LP             L  D S+ TP E ++IRRERNR+HAKRTR RK++  +++E
Sbjct:    9 ASRERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEKGESGDVDPRVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEME 187          
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S3HRZ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRZ3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.460e-8
Identity = 66/184 (35.87%), Postives = 103/184 (55.98%), Query Frame = 1
Query:  232 KRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPE--GTDGETGASVRR-----GSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLR 762
            KR KL+ D+++   RERNR+HA+ TR+RK+A++  LQ R ++L  E+  L+    E + AS+L+ L + P+  G   E G +  +     G  SS     DA     +++ S      +E+E+  ++   L  D S  +  + E IRRERNR+HAK+TR RKK +  ++E  I   E+ IR LR
Sbjct:   71 KRRKLNEDERVQRCRERNRIHARNTRERKRAQMDLLQQRIQELSDEKKSLENYEPEESVASILMSLSSSPKTRGKYFEDGVAAAKDFEQLGDESSKRFAADAIERIKSEI-SATLSDDEELEMNSEI---LLKDKSACSSADLEMIRRERNRMHAKKTRLRKKKMLSEMESIILGLERDIRDLR 250          
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S4W4V3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W4V3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.710e-8
Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  268 ASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCA-----------------GTDVDSXXXXXXDEVELLDKLPAH-----------LSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLE 720
            ASRERNR+HA+KTRQRKK  + +LQ RA +LK +Q  L++ + E+ TA++LL +    +G  G+    V      SA    DA+                    GT   +       + E +  LP             L  D S+ TP E ++IRRERNR+HAKRTR RK++  +++E
Sbjct:    9 ASRERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEKGESGDVDPRVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEME 187          
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S4RSS5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RSS5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.620e-8
Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  268 ASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCA-----------------GTDVDSXXXXXXDEVELLDKLPAH-----------LSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLE 720
            ASRERNR+HA+KTRQRKK  + +LQ RA +LK +Q  L++ + E+ TA++LL +    +G  G+    V      SA    DA+                    GT   +       + E +  LP             L  D S+ TP E ++IRRERNR+HAKRTR RK++  +++E
Sbjct:  181 ASRERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEKGESGDVDPRVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEME 359          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A835YJN1_9STRA1.470e-257100.00BZIP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2REX0_9STRA4.720e-1542.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RAP5_9STRA1.770e-1138.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4AQ14_9STRA9.160e-1032.65Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6U5IV75_9STRA2.280e-935.26Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
BZP14_PHATC7.430e-932.86bZIP transcription factor 14 n=1 Tax=Phaeodactylum... [more]
A0A7S4VPU5_9STRA1.290e-835.20Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3HRZ3_9STRA1.460e-835.87Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S4W4V3_9STRA2.710e-835.20Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RSS5_9STRA3.620e-835.20Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_78contigContig_78:512219..513842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351027|estExt_Genemark1.C_Ctg_780050
DescriptionBasic region leucine zipper
COG categoryK
Max annot lvl2836|Bacillariophyta
EggNOG OGs2CYZ1@1|root,2S7C7@2759|Eukaryota,2XC3T@2836|Bacillariophyta
Evalue9.09e-10
Seed ortholog2850.Phatr45314
Hectar predicted targeting categoryother localisation
TranscriptId351349
TrackFilteredModels1
ProteinId351027
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351027gene_12548Tribonema minus UTEX_B_3156 geneContig_78 512219..513842 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12548_1exon_12548_1Tribonema minus UTEX_B_3156 exonContig_78 512219..513842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12548CDS_12548Tribonema minus UTEX_B_3156 CDSContig_78 512219..513625 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12548UTR3_12548Tribonema minus UTEX_B_3156 three_prime_UTRContig_78 513626..513842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351027Trimin1|351027|estExt_Genemark1.C_Ctg_780050Tribonema minus UTEX_B_3156 polypeptideContig_78 512219..513625 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12548 ID=mRNA_12548|Name=jgi.p|Trimin1|351027|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1624bp|location=Sequence derived from alignment at Contig_78:512219..513842+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTACAGCTTCAGCATCCAGCGATGGTGGTGGCGGCCAGGCCGCCTA
CGTACTCCGCCCACTCAAGAAGCGCCCGCTCTCAGACAACGCACCTCCGG
GCAGCAGCGCTAGGAGTACCGCATCGACCTGCTCCTATTCCTCGCACACG
TCCGGCACGGGTTCCGGGGACGACGGCAACAGCACTGACGACGATGCTCG
GCACCAACAGCACGAGCAGGGCGCATGCAGCAAGAGGACCAAGCTCTCCC
ATGACGACAAGCTCGCCGCCAGCAGAGAACGGAACAGGGTTCATGCGCAG
AAGACTCGGCAGCGCAAGAAGGCTCGCCTTCTGGATCTCCAAGCTCGTGC
TCGGCAGCTCAAGGCGGAACAGGACCATCTGCAGGAAGCTGTCGACGAGC
GAGCCACTGCCAGCCTGCTGCTTCGCCTCGGCACGGGCCCGGAAGGGACG
GACGGCGAAACCGGCGCGAGCGTCAGGCGAGGGAGCTGCAGCAGCGCCGC
AGCAACTGACGATGCAGCGGGCTGCGCCGGCACGGACGTCGACAGCGACG
AGGACGACGACAACGACGAGGTGGAGCTGCTCGACAAGCTGCCAGCCCAC
CTCTCCTGCGACCTCTCCCGCCTGACGCCTGACGAACGTGAGCAGATCAG
GAGGGAGCGCAACCGCCTGCACGCCAAGCGCACTCGCACCCGGAAAAAGC
TCGTGTTCCAGGACCTGGAGCGGCAGATACGGGTGTCGGAGAAGGCCATC
CGGCGGCTGCGCGCCATCCTGCAGCAGAGGGCTGCCTCCCCCTCCCAGCA
GCAGCAGCAACAACACCAGCAGCAGCAGCAGCCACTCCCCCCACACACAG
CAGAAGCCGACTCCAAGCCGGCGCGCATGGCCCCCTCCCCCACGCCCCAG
CAGGCCTACGCCGGCAGCCGGTCGCCGTGCCGGAAGCAGATGGCCATCGC
GCGCCCCGCATCTGCAGCCTCTTCAGGCGCATCCCCGTCCGCAGCGTGCC
TCGCACCGCCGCTGGTGCCACTCGCCGTGCTGCCCGTCGCGCCCTCCGCT
GCGACCAAGCTCCCCATGGTGACGGCGCAGGCGCCAGCGGGAGCGGAGTA
CGGCAGCGTGCCCGCGCACATGTATGCGCACTACCCTATCTACCCGCCGC
ACGCGGCGGCGTACGTGGCGGCGGCGGGGGCTTTATTGCCGGGCATCTAT
GGCGGCGGCGGCGGCGCGGCAGCAGCAGCAGCAGCGCTCCCCGCTCACGT
GCTGCAGGCGCACGCGTTCGACATGCAGGGGCGCTACGCCGCCGCCGCAG
CTGCTGCCGCGGCTTATCCGCAGCAGCAGGGCACGCCGCAGGCGGGAGCG
GCGGCGGCGGCAGCGGCACACCCCTACGCCGCAGCATATTACCAGTACCA
CCAATGAAATGCGGGCTGCATTGTCGAGCAGTCGCGCCCGTCACCGCTGC
GTTGTTCCCCGCCTCTTACAGTACTTCCCCCCTCCTCCTTGGCTCCCGGT
TTTCAGCCTACTTTACTTGCGGCTACAGACAATACTAGAACCGCGCGGAG
GGGCGGGCGGGCAGGTGTTCTGCCGCAGGCCCTGTTTGTTGTGGGCTGGC
AGCATGTGCCGCATCGTTTGCCAG
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protein sequence of jgi.p|Trimin1|351027

>Trimin1|351027|estExt_Genemark1.C_Ctg_780050 ID=Trimin1|351027|estExt_Genemark1.C_Ctg_780050|Name=jgi.p|Trimin1|351027|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=469bp
MSTASASSDGGGGQAAYVLRPLKKRPLSDNAPPGSSARSTASTCSYSSHT
SGTGSGDDGNSTDDDARHQQHEQGACSKRTKLSHDDKLAASRERNRVHAQ
KTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGT
DGETGASVRRGSCSSAAATDDAAGCAGTDVDSDEDDDNDEVELLDKLPAH
LSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAI
RRLRAILQQRAASPSQQQQQQHQQQQQPLPPHTAEADSKPARMAPSPTPQ
QAYAGSRSPCRKQMAIARPASAASSGASPSAACLAPPLVPLAVLPVAPSA
ATKLPMVTAQAPAGAEYGSVPAHMYAHYPIYPPHAAAYVAAAGALLPGIY
GGGGGAAAAAAALPAHVLQAHAFDMQGRYAAAAAAAAAYPQQQGTPQAGA
AAAAAAHPYAAAYYQYHQ*
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mRNA from alignment at Contig_78:512219..513842+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12548 ID=mRNA_12548|Name=jgi.p|Trimin1|351027|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1624bp|location=Sequence derived from alignment at Contig_78:512219..513842+ (Tribonema minus UTEX_B_3156 )
ATGAGTACAGCTTCAGCATCCAGCGATGGTGGTGGCGGCCAGGCCGCCTA CGTACTCCGCCCACTCAAGAAGCGCCCGCTCTCAGACAACGCACCTCCGG GCAGCAGCGCTAGGAGTACCGCATCGACCTGCTCCTATTCCTCGCACACG TCCGGCACGGGTTCCGGGGACGACGGCAACAGCACTGACGACGATGCTCG GCACCAACAGCACGAGCAGGGCGCATGCAGCAAGAGGACCAAGCTCTCCC ATGACGACAAGCTCGCCGCCAGCAGAGAACGGAACAGGGTTCATGCGCAG AAGACTCGGCAGCGCAAGAAGGCTCGCCTTCTGGATCTCCAAGCTCGTGC TCGGCAGCTCAAGGCGGAACAGGACCATCTGCAGGAAGCTGTCGACGAGC GAGCCACTGCCAGCCTGCTGCTTCGCCTCGGCACGGGCCCGGAAGGGACG GACGGCGAAACCGGCGCGAGCGTCAGGCGAGGGAGCTGCAGCAGCGCCGC AGCAACTGACGATGCAGCGGGCTGCGCCGGCACGGACGTCGACAGCGACG AGGACGACGACAACGACGAGGTGGAGCTGCTCGACAAGCTGCCAGCCCAC CTCTCCTGCGACCTCTCCCGCCTGACGCCTGACGAACGTGAGCAGATCAG GAGGGAGCGCAACCGCCTGCACGCCAAGCGCACTCGCACCCGGAAAAAGC TCGTGTTCCAGGACCTGGAGCGGCAGATACGGGTGTCGGAGAAGGCCATC CGGCGGCTGCGCGCCATCCTGCAGCAGAGGGCTGCCTCCCCCTCCCAGCA GCAGCAGCAACAACACCAGCAGCAGCAGCAGCCACTCCCCCCACACACAG CAGAAGCCGACTCCAAGCCGGCGCGCATGGCCCCCTCCCCCACGCCCCAG CAGGCCTACGCCGGCAGCCGGTCGCCGTGCCGGAAGCAGATGGCCATCGC GCGCCCCGCATCTGCAGCCTCTTCAGGCGCATCCCCGTCCGCAGCGTGCC TCGCACCGCCGCTGGTGCCACTCGCCGTGCTGCCCGTCGCGCCCTCCGCT GCGACCAAGCTCCCCATGGTGACGGCGCAGGCGCCAGCGGGAGCGGAGTA CGGCAGCGTGCCCGCGCACATGTATGCGCACTACCCTATCTACCCGCCGC ACGCGGCGGCGTACGTGGCGGCGGCGGGGGCTTTATTGCCGGGCATCTAT GGCGGCGGCGGCGGCGCGGCAGCAGCAGCAGCAGCGCTCCCCGCTCACGT GCTGCAGGCGCACGCGTTCGACATGCAGGGGCGCTACGCCGCCGCCGCAG CTGCTGCCGCGGCTTATCCGCAGCAGCAGGGCACGCCGCAGGCGGGAGCG GCGGCGGCGGCAGCGGCACACCCCTACGCCGCAGCATATTACCAGTACCA CCAATGAAATGCGGGCTGCATTGTCGAGCAGTCGCGCCCGTCACCGCTGC GTTGTTCCCCGCCTCTTACAGTACTTCCCCCCTCCTCCTTGGCTCCCGGT TTTCAGCCTACTTTACTTGCGGCTACAGACAATACTAGAACCGCGCGGAG GGGCGGGCGGGCAGGTGTTCTGCCGCAGGCCCTGTTTGTTGTGGGCTGGC AGCATGTGCCGCATCGTTTGCCAG
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Coding sequence (CDS) from alignment at Contig_78:512219..513842+

>mRNA_12548 ID=mRNA_12548|Name=jgi.p|Trimin1|351027|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1407bp|location=Sequence derived from alignment at Contig_78:512219..513842+ (Tribonema minus UTEX_B_3156 )
ATGAGTACAGCTTCAGCATCCAGCGATGGTGGTGGCGGCCAGGCCGCCTA
CGTACTCCGCCCACTCAAGAAGCGCCCGCTCTCAGACAACGCACCTCCGG
GCAGCAGCGCTAGGAGTACCGCATCGACCTGCTCCTATTCCTCGCACACG
TCCGGCACGGGTTCCGGGGACGACGGCAACAGCACTGACGACGATGCTCG
GCACCAACAGCACGAGCAGGGCGCATGCAGCAAGAGGACCAAGCTCTCCC
ATGACGACAAGCTCGCCGCCAGCAGAGAACGGAACAGGGTTCATGCGCAG
AAGACTCGGCAGCGCAAGAAGGCTCGCCTTCTGGATCTCCAAGCTCGTGC
TCGGCAGCTCAAGGCGGAACAGGACCATCTGCAGGAAGCTGTCGACGAGC
GAGCCACTGCCAGCCTGCTGCTTCGCCTCGGCACGGGCCCGGAAGGGACG
GACGGCGAAACCGGCGCGAGCGTCAGGCGAGGGAGCTGCAGCAGCGCCGC
AGCAACTGACGATGCAGCGGGCTGCGCCGGCACGGACGTCGACAGCGACG
AGGACGACGACAACGACGAGGTGGAGCTGCTCGACAAGCTGCCAGCCCAC
CTCTCCTGCGACCTCTCCCGCCTGACGCCTGACGAACGTGAGCAGATCAG
GAGGGAGCGCAACCGCCTGCACGCCAAGCGCACTCGCACCCGGAAAAAGC
TCGTGTTCCAGGACCTGGAGCGGCAGATACGGGTGTCGGAGAAGGCCATC
CGGCGGCTGCGCGCCATCCTGCAGCAGAGGGCTGCCTCCCCCTCCCAGCA
GCAGCAGCAACAACACCAGCAGCAGCAGCAGCCACTCCCCCCACACACAG
CAGAAGCCGACTCCAAGCCGGCGCGCATGGCCCCCTCCCCCACGCCCCAG
CAGGCCTACGCCGGCAGCCGGTCGCCGTGCCGGAAGCAGATGGCCATCGC
GCGCCCCGCATCTGCAGCCTCTTCAGGCGCATCCCCGTCCGCAGCGTGCC
TCGCACCGCCGCTGGTGCCACTCGCCGTGCTGCCCGTCGCGCCCTCCGCT
GCGACCAAGCTCCCCATGGTGACGGCGCAGGCGCCAGCGGGAGCGGAGTA
CGGCAGCGTGCCCGCGCACATGTATGCGCACTACCCTATCTACCCGCCGC
ACGCGGCGGCGTACGTGGCGGCGGCGGGGGCTTTATTGCCGGGCATCTAT
GGCGGCGGCGGCGGCGCGGCAGCAGCAGCAGCAGCGCTCCCCGCTCACGT
GCTGCAGGCGCACGCGTTCGACATGCAGGGGCGCTACGCCGCCGCCGCAG
CTGCTGCCGCGGCTTATCCGCAGCAGCAGGGCACGCCGCAGGCGGGAGCG
GCGGCGGCGGCAGCGGCACACCCCTACGCCGCAGCATATTACCAGTACCA
CCAATGA
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