mRNA_12483 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350994
Unique NamemRNA_12483
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: A0A836C9H0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9H0_9STRA)

HSP 1 Score: 765 bits (1975), Expect = 6.810e-277
Identity = 454/454 (100.00%), Postives = 454/454 (100.00%), Query Frame = 1
Query:    1 MSRILDAAGMLQRSGKEHSGQQPNLQDQLQFDRSRPSLCFNIARLQHQMQQQQFAPPGTYSLSETSSSASLIASPAVSAPLPTHVAHRHLAKCLSDPALHMAATTAQEMIRGTDFWRALRAGVDVRKHAVPGWRDGFSGSLVLPYAFSDNDVTSSEAGDDVGAGGSARRRRWLRKPKPVSDDGKGMVTLFIDADGDSLCWCKLGQPVLRRDPRYAIRIGDVRHVCVAPPSPRDGRALPAITLSTPTRILSFSVDGRALHALLADTLRSVADLNAALFSAAQRPQHRPFYSASAFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLPPLSRASAPLDHVLPPPRVPRVAHIGRLSGGLGVQRRGSLDGGGGSDGARGLPPRSASVPFDLHAACDLSAVSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGAACDDDDVTGCADAPQPEVPQ 1362
            MSRILDAAGMLQRSGKEHSGQQPNLQDQLQFDRSRPSLCFNIARLQHQMQQQQFAPPGTYSLSETSSSASLIASPAVSAPLPTHVAHRHLAKCLSDPALHMAATTAQEMIRGTDFWRALRAGVDVRKHAVPGWRDGFSGSLVLPYAFSDNDVTSSEAGDDVGAGGSARRRRWLRKPKPVSDDGKGMVTLFIDADGDSLCWCKLGQPVLRRDPRYAIRIGDVRHVCVAPPSPRDGRALPAITLSTPTRILSFSVDGRALHALLADTLRSVADLNAALFSAAQRPQHRPFYSASAFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLPPLSRASAPLDHVLPPPRVPRVAHIGRLSGGLGVQRRGSLDGGGGSDGARGLPPRSASVPFDLHAACDLSAVSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGAACDDDDVTGCADAPQPEVPQ
Sbjct:    1 MSRILDAAGMLQRSGKEHSGQQPNLQDQLQFDRSRPSLCFNIARLQHQMQQQQFAPPGTYSLSETSSSASLIASPAVSAPLPTHVAHRHLAKCLSDPALHMAATTAQEMIRGTDFWRALRAGVDVRKHAVPGWRDGFSGSLVLPYAFSDNDVTSSEAGDDVGAGGSARRRRWLRKPKPVSDDGKGMVTLFIDADGDSLCWCKLGQPVLRRDPRYAIRIGDVRHVCVAPPSPRDGRALPAITLSTPTRILSFSVDGRALHALLADTLRSVADLNAALFSAAQRPQHRPFYSASAFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLPPLSRASAPLDHVLPPPRVPRVAHIGRLSGGLGVQRRGSLDGGGGSDGARGLPPRSASVPFDLHAACDLSAVSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGAACDDDDVTGCADAPQPEVPQ 454          
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: A0A835ZAI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 9.780e-13
Identity = 72/229 (31.44%), Postives = 88/229 (38.43%), Query Frame = 1
Query:  343 FWRALRAGVDVRKHAVPGWRDGFSGSLVLPYAFSDNDVTSSEAGDDVGAGGSARRR----------------------------------------------RWLRKPKPVSDDGKGMVTLFIDADGDSLCWCKLGQPVLRRDPRYAIRIGDVRHVCVAP-PSPRDGR----------ALPA-----------ITLSTPTRILSFSVDGRALHALLADTLRSVADLNAA 825
            FWRALRAGVDV KHA P  R     +   P A  D        G    + G+A R                                               R L  P PV   G+GMVTLF D    SLCWC  GQ VL  D R ++ I D+ H+ +AP PSP              A PA           +TL T +R L F++ GR L  L+   L+ + D N A
Sbjct:  107 FWRALRAGVDVHKHASPLPR----AAAAEPPAACDGCCPRCATGHHRWSTGAAARXXXXXXXXXXXXXXXXXXXXXXSXXRSARSARAATLPSGRRAVRALARLLHGPGPVQAGGEGMVTLFADRAQSSLCWCVPGQSVLSPDTRASVPIEDIIHMDIAPIPSPTTSAPRCLNPLPPTASPAATAAVTPIATDVTLWTASRALRFTIKGRQLQDLIVSGLQRMVDANRA 331          
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: A0A836C9Y6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Y6_9STRA)

HSP 1 Score: 2241 bits (5807), Expect = 0.000e+0
Identity = 1537/1537 (100.00%), Postives = 1537/1537 (100.00%), Query Frame = 1
Query:    1 MTLDAAFKLVVEEGGVVEATFPFHGDVEGSQLSFQIGDTIKVLQKDELWSWGQLVRTGEEGYFPHNYVQATFKPLPGMHELKMKMAIKRARQEALERGEDPDAAEAAIVAAANGGAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMDGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPDYGXXXXXXXXYPMEANQGNGGGGDWSNVGDVDMAFGMWMDFIDGGNDPILPAAKAEEEAPSPADAGLDKRRSKRGKLARELVKSEESYVSALEALLDTIIKPCLGEGGRAARYPPVSHGEAQQMFGGLHAGEILHLNTELRNXXXXXXXXXXXXXXXXXXXXXXXXLRGRIKQWDDNSCLGDVFIQFAPSLRTYTEYCLQHEDASAQLSMLSSSNDSFRSLLQRSKQDPRAERRDAQDLLALPKKRIPEYRVALEGLLRYTDEDHADHPLLTKALEDLSDIANFIEEGARWRQNQARMAGIKARLANPPHDLLRPGRIFLRSGVLTKLGRFADXXXXXXXXXXXXXXXXXXXXXXXXRADFFVLFNDGLLQARPQTFGTKYIFKRIVTVLRVELVGHLPTKTKAQYPFRIVTDGHIFLLTAQSSEQRTQWMKALTQALACRVADGYAVIKYGTRQLIHKGPLGLLKLDKDPVEVREEYFYVFSDVVVRGRALWRDKFKHKQTLDVTRVEENYVPMEQQYYGGGGLPKEISGGHGALDRCFRLIHIEGSTVVMAPTLGEKAKWIEALLKQQEAKREEAAKSVNASRQPASQDVFANADSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGAPRNASASQPDKPSRRATASAAQEVDLLGLSLHDSDGESAPAPALTARSTNGSATSSRRNTASGKPAASAGVIDLLSSAPSQPVQXXXXXXXXXXXXXXXXXXXGGGGMGLLQMDLARLYATGASPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQQAAFGTMYGMQXXXXXXXXXXXXXYSAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQISDVEHEEQVQQSGEQEHIDTKLAESTWQAMQIGAASSDSERNPVSDALRLLMKHGKLVLLSVTVVVLVLSVIASVFTPSSGALQRGQPLPRDLPAAITRATHASAAAGLLKPIATSCRRVHDGGIDFIVSTVSAARQAEKAAKSNLTPGAADGGXXXXXXXXXXXXXXXXXXARDPFARESRDARMVVAPRVPPEHVLVLNKFPTLAGHALLVTDAFREQATPLTAGDFAAWYAVVAAADAVGFFNSAAEAGASQRHKHMQLVPLASFAPCTQSRGLPIDSAISMATARTSTVTAANDSEAAIFRLPNFKFKHGLTLLPPESALLHGXXXXXXXAGMPLLAIYSALLRRTGLLDCAAAPGDCAFAGGAGSSGCGDSGGGSTVAPAAALAPHNVLLTTRWMLVVPRARAGCAGVNVNGLGFMGSLLVHADGDGGGAGGAPDVKPMSVLSCVTVPDAP 4611
            MTLDAAFKLVVEEGGVVEATFPFHGDVEGSQLSFQIGDTIKVLQKDELWSWGQLVRTGEEGYFPHNYVQATFKPLPGMHELKMKMAIKRARQEALERGEDPDAAEAAIVAAANGGAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMDGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPDYGXXXXXXXXYPMEANQGNGGGGDWSNVGDVDMAFGMWMDFIDGGNDPILPAAKAEEEAPSPADAGLDKRRSKRGKLARELVKSEESYVSALEALLDTIIKPCLGEGGRAARYPPVSHGEAQQMFGGLHAGEILHLNTELRNXXXXXXXXXXXXXXXXXXXXXXXXLRGRIKQWDDNSCLGDVFIQFAPSLRTYTEYCLQHEDASAQLSMLSSSNDSFRSLLQRSKQDPRAERRDAQDLLALPKKRIPEYRVALEGLLRYTDEDHADHPLLTKALEDLSDIANFIEEGARWRQNQARMAGIKARLANPPHDLLRPGRIFLRSGVLTKLGRFADXXXXXXXXXXXXXXXXXXXXXXXXRADFFVLFNDGLLQARPQTFGTKYIFKRIVTVLRVELVGHLPTKTKAQYPFRIVTDGHIFLLTAQSSEQRTQWMKALTQALACRVADGYAVIKYGTRQLIHKGPLGLLKLDKDPVEVREEYFYVFSDVVVRGRALWRDKFKHKQTLDVTRVEENYVPMEQQYYGGGGLPKEISGGHGALDRCFRLIHIEGSTVVMAPTLGEKAKWIEALLKQQEAKREEAAKSVNASRQPASQDVFANADSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGAPRNASASQPDKPSRRATASAAQEVDLLGLSLHDSDGESAPAPALTARSTNGSATSSRRNTASGKPAASAGVIDLLSSAPSQPVQXXXXXXXXXXXXXXXXXXXGGGGMGLLQMDLARLYATGASPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQQAAFGTMYGMQXXXXXXXXXXXXXYSAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQISDVEHEEQVQQSGEQEHIDTKLAESTWQAMQIGAASSDSERNPVSDALRLLMKHGKLVLLSVTVVVLVLSVIASVFTPSSGALQRGQPLPRDLPAAITRATHASAAAGLLKPIATSCRRVHDGGIDFIVSTVSAARQAEKAAKSNLTPGAADGGXXXXXXXXXXXXXXXXXXARDPFARESRDARMVVAPRVPPEHVLVLNKFPTLAGHALLVTDAFREQATPLTAGDFAAWYAVVAAADAVGFFNSAAEAGASQRHKHMQLVPLASFAPCTQSRGLPIDSAISMATARTSTVTAANDSEAAIFRLPNFKFKHGLTLLPPESALLHGXXXXXXXAGMPLLAIYSALLRRTGLLDCAAAPGDCAFAGGAGSSGCGDSGGGSTVAPAAALAPHNVLLTTRWMLVVPRARAGCAGVNVNGLGFMGSLLVHADGDGGGAGGAPDVKPMSVLSCVTVPDAP
Sbjct:    1 MTLDAAFKLVVEEGGVVEATFPFHGDVEGSQLSFQIGDTIKVLQKDELWSWGQLVRTGEEGYFPHNYVQATFKPLPGMHELKMKMAIKRARQEALERGEDPDAAEAAIVAAANGGAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMDGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPDYGXXXXXXXXYPMEANQGNGGGGDWSNVGDVDMAFGMWMDFIDGGNDPILPAAKAEEEAPSPADAGLDKRRSKRGKLARELVKSEESYVSALEALLDTIIKPCLGEGGRAARYPPVSHGEAQQMFGGLHAGEILHLNTELRNXXXXXXXXXXXXXXXXXXXXXXXXLRGRIKQWDDNSCLGDVFIQFAPSLRTYTEYCLQHEDASAQLSMLSSSNDSFRSLLQRSKQDPRAERRDAQDLLALPKKRIPEYRVALEGLLRYTDEDHADHPLLTKALEDLSDIANFIEEGARWRQNQARMAGIKARLANPPHDLLRPGRIFLRSGVLTKLGRFADXXXXXXXXXXXXXXXXXXXXXXXXRADFFVLFNDGLLQARPQTFGTKYIFKRIVTVLRVELVGHLPTKTKAQYPFRIVTDGHIFLLTAQSSEQRTQWMKALTQALACRVADGYAVIKYGTRQLIHKGPLGLLKLDKDPVEVREEYFYVFSDVVVRGRALWRDKFKHKQTLDVTRVEENYVPMEQQYYGGGGLPKEISGGHGALDRCFRLIHIEGSTVVMAPTLGEKAKWIEALLKQQEAKREEAAKSVNASRQPASQDVFANADSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGAPRNASASQPDKPSRRATASAAQEVDLLGLSLHDSDGESAPAPALTARSTNGSATSSRRNTASGKPAASAGVIDLLSSAPSQPVQXXXXXXXXXXXXXXXXXXXGGGGMGLLQMDLARLYATGASPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQQAAFGTMYGMQXXXXXXXXXXXXXYSAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQISDVEHEEQVQQSGEQEHIDTKLAESTWQAMQIGAASSDSERNPVSDALRLLMKHGKLVLLSVTVVVLVLSVIASVFTPSSGALQRGQPLPRDLPAAITRATHASAAAGLLKPIATSCRRVHDGGIDFIVSTVSAARQAEKAAKSNLTPGAADGGXXXXXXXXXXXXXXXXXXARDPFARESRDARMVVAPRVPPEHVLVLNKFPTLAGHALLVTDAFREQATPLTAGDFAAWYAVVAAADAVGFFNSAAEAGASQRHKHMQLVPLASFAPCTQSRGLPIDSAISMATARTSTVTAANDSEAAIFRLPNFKFKHGLTLLPPESALLHGXXXXXXXAGMPLLAIYSALLRRTGLLDCAAAPGDCAFAGGAGSSGCGDSGGGSTVAPAAALAPHNVLLTTRWMLVVPRARAGCAGVNVNGLGFMGSLLVHADGDGGGAGGAPDVKPMSVLSCVTVPDAP 1537          
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: D7FJI7_ECTSI (Pleckstrin homology (PH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI7_ECTSI)

HSP 1 Score: 530 bits (1366), Expect = 4.510e-166
Identity = 365/783 (46.62%), Postives = 481/783 (61.43%), Query Frame = 1
Query:    7 LDAAFKLVVEEGGVVEATFPFHGDVEGSQLSFQIGDTIKVLQKDELWSWGQLVRTGEEGYFPHNYVQATFKPLPGMHELKMKMAIKRARQEALERGEDPDAAEAAIVAAANGGAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMDGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPDYGXXXXXXXXYPMEANQGNGGGGDWSNVGDVDMAFGMWMDFIDGGNDPILPAAKAEEEAPSPADAGLDKRRSKRGKLARELVKSEESYVSALEALLDTIIKPCLGEGGRAARYPPVSHGEAQQMFGGLHAGEILHLNTELRNXXXXXXXXXXXXXXXXXXXXXXXXLRGRIKQWDDNSCLGDVFIQFAPSLRTYTEYCLQHEDASAQLSMLSSSNDSFRSLLQRSKQDPRAERRDAQDLLALPKKRIPEYRVALEGLLRYTDEDHADHPLLTKALEDLSDIANFIEEGARWRQNQARMAGIKARLANPPHDLLRPGRIFLRSGVLTKLGRFADXXXXXXXXXXXXXXXXXXXXXXXXRADFFVLFNDGLLQARPQTFGTKYIFKRIVTVLRVELVGHLPTKTKAQYPFRIVTDGHIFLLTAQSSEQRTQWMKALTQALACRVADGYAVIKYGTRQLIHKGPLGLLKLDKDPVEVREEYFYVFSDVVVRGRALWRDKFKHKQTLDVTRVEENYVPMEQQYYGGGGLPKEISGGHGALDRCFRLIHIEGSTVVMAPTLGEKAKWIEALLKQQEAKREEAAKSVNASRQPASQDVFAN 2355
            +DAAFKL VEEG  V ATFPF GD+ G QLSFQIGD IK+LQKDELWSWG+L ++GEEG+FPHNYVQA+F+PLPGMHEL+ ++ IK+AR+EA+ RGEDPDAAEA I    NGG           XXXXXXXXXXXXXXXXXXXXX                      XXXXXXXXXXXXXXXX  +P            P     GN GGG     GD DM FGMWM+ +    D         E   S   +  D+RR +R  +AREL+ +E+ YV  LEALL TII+PCLG+G   +   P+   +A ++FG L A EIL +NT  R                         LRGR+    D +C GD+F +FAP L+ Y EYC QHE  ++++S+++S ND F +LL R++ DPR +  DAQ LL +P +RIP Y++ LEG+L+ T+ DH D PLL  A+E +SD+A+FI +  + R+NQA++  ++A L+ P  DL +P RIFLRSG+LTKLGR                           R DFF LFNDGLL A+P TFG KY+FKRI  VL+VE VG+L  K KA + FR+VT GHI+LL+A+S   +  W++ L              I+ G R+ +HKGPL +L++ KD   VR E+FY+F+DVVVRG+ALWR KFKHK+T+ VTRV+ ++  M+ ++     LPKE++    A D+ FR+IH  GS +VMA +  +KA W+ AL  Q + K+    +++ AS +   +D FA+
Sbjct:   33 VDAAFKLQVEEGATVSATFPFFGDLAGGQLSFQIGDNIKLLQKDELWSWGKLEKSGEEGWFPHNYVQASFQPLPGMHELQQRILIKKAREEAIARGEDPDAAEALI---RNGGVAPVDVVKPPEXXXXXXXXXXXXXXXXXXXXXXXX-------------------XXXXXXXXXXXXXXXXMMEPPQ----------PQGNEWGNQGGG-----GDPDM-FGMWMEDL---GDEQTSDLDDNESLASVTSSDRDRRRRERKNIARELLDTEDKYVRMLEALLATIIRPCLGQGSNKST--PMPKDDANELFGTLRAEEILAINTAFREQ-----------------------LRGRMATLSDETCFGDLFKRFAPFLKMYVEYCTQHESTASRVSLIASKNDKFSNLLHRARSDPRCQDLDAQSLLIMPIQRIPRYKLLLEGMLKNTEADHPDRPLLQNAIEQISDVASFINDSIKRRENQAKIWDLQAMLSEPL-DLAKPTRIFLRSGILTKLGR-----------------------RYQDREDFFALFNDGLLHAKPATFGAKYVFKRIDPVLQVEDVGYLKDKPKALHVFRVVTKGHIYLLSAKSMALKKDWVRLLELC-----------IQGGKRETVHKGPLRVLRIGKD-AGVRLEFFYIFNDVVVRGKALWRGKFKHKETMVVTRVDSSFE-MDARHE--ALLPKEVTS-RMAHDQMFRIIHRNGSVIVMAKSETDKAVWLSALEHQMKLKKTANLQNITASNRIVHEDNFAS 709          
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: A0A6H5L694_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L694_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.300e-36
Identity = 120/345 (34.78%), Postives = 163/345 (47.25%), Query Frame = 1
Query: 3610 GGIDFIVSTVSAARQAEKAAKSNLTPGAADGGXXXXXXXXXXXXXXXXXXARDPFARESRDARMVVAPRVPPEHVLVLNKFPTLAGHALLVTDAFREQATPLTAGDFAAWYAVVAAADAVGFFNSAAEAGASQRHKHMQLVP---LASFAPCTQSRGLPIDSAISMATARTSTVTAANDSEAAIFRLPNFKFKHGLTLLPPESALLH---GXXXXXXXAGMPLLAIYSALLRRTGL-------LDCAAAPGDCAFAGGAGSSGCGDSGGGSTVAPAAALAPHNVLLTTRWMLVVPRARAGCAGVNVNGLGFMGSLLVHAD---GDGGGAGGAPDVKPMSVLSCVT 4596
            G +DFIVS +S      KAA +     AA                     + DPF     D RM V   +PP H LVLNKF T+  HAL++T  F+ Q   LT  DF AWY VV     VGF+NSA +AGASQRHKHMQ++P   L  + P      +P+D  IS        +  ++   + ++RLP F+F+H  TLLP    L     G           L   Y  LLR  G         +    PGD A                ++ AP + L P+N +LT RW+++VPR+R    G++VNG+GF+G+LLV      G+G G     +   ++VL  VT
Sbjct:  360 GAMDFIVSVISGEALEAKAAIATPPASAA---------------------SDDPFDPRVLDPRMAVE-ELPPSHSLVLNKFNTMRNHALIITTEFQSQQEALTEEDFGAWYRVVEELPGVGFYNSAVDAGASQRHKHMQVIPDDALWDYRPAAN-EAIPVDEPISR-------LVGSSRDLSRVWRLPTFRFQHAFTLLPSLQELGEEGVGDDDPSRRMAAHLRTRYVDLLREVGFDTSSLLAQEPTRTPGDAA----------------ASTAPVSTLPPYNAVLTPRWLMLVPRSRREWGGIDVNGMGFLGALLVRDKAFAGEGAGVASVREPGALAVLEGVT 658          
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: D8LQY6_ECTSI (Ap4A phosphorylase II n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY6_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.440e-34
Identity = 108/293 (36.86%), Postives = 145/293 (49.49%), Query Frame = 1
Query: 3766 DPFARESRDARMVVAPRVPPEHVLVLNKFPTLAGHALLVTDAFREQATPLTAGDFAAWYAVVAAADAVGFFNSAAEAGASQRHKHMQLVP---LASFAPCTQSRGLPIDSAISMATARTSTVTAANDSEAAIFRLPNFKFKHGLTLLPPESALLH---GXXXXXXXAGMPLLAIYSALLRRTGL-------LDCAAAPGDCAFAGGAGSSGCGDSGGGSTVAPAAALAPHNVLLTTRWMLVVPRARAGCAGVNVNGLGFMGSLLVHAD---GDGGGAGGAPDVKPMSVLSCVT 4596
            DPF     D RM     +PP H LVLNKF T+  HAL++T  F+ Q   LT  DF AWY VV     VGF+NSA +AGASQRHKHMQ++P   L  + P      +P+D  IS        +  ++   + ++RLP F+F+H  TLLP    L     G           L   Y  LLR  G         +    PGD                  STV P + L P+N +LT RW+++VPR+R    G++VNG+GF+G+LLV      G+G G     +   ++VL  VT
Sbjct:  236 DPFDPRVLDPRM----ELPPSHSLVLNKFNTVRNHALIITTEFQSQQEALTEEDFGAWYRVVEELPGVGFYNSAVDAGASQRHKHMQVIPDDALWDYRPAAN-EAIPVDEPISR-------LVGSSRDFSRVWRLPTFRFQHAFTLLPSLQELGEEGSGDDDPSRRMAAHLKTRYVELLREVGFDTSSLLAQEPTRTPGDATA---------------STV-PVSTLPPYNAVLTPRWLMLVPRSRREWGGIDVNGMGFLGALLVRDKAFAGEGAGVASVREPGALAVLEGVT 500          
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: A0A3N1YAM4_9GAMM (ATP adenylyltransferase n=1 Tax=Inmirania thermothiophila TaxID=1750597 RepID=A0A3N1YAM4_9GAMM)

HSP 1 Score: 129 bits (324), Expect = 4.160e-29
Identity = 126/366 (34.43%), Postives = 156/366 (42.62%), Query Frame = 1
Query: 3511 PRDLPAAITRATHASAAAGLLKPIATSCRRVHDGGIDFIVSTVSAARQAEKAAKSNLTPGAADGGXXXXXXXXXXXXXXXXXXARDPFARESRDARMVVAPRVPPEHVLVLNKFPTLAGHALLVTDAFREQATPLTAGDFAAWYAVVAAADAVGFFNSAAEAGASQRHKHMQLVPLASFAPCTQSRGLPIDSAISMATARTSTVTAANDSEAAIFRLPNFKFKHGLTLLP--PESALLHGXXXXXXXAGMPLLAIYSALLRRTGLLDCAAAPGDCAFAGGAGSSGCGDSGGGSTVAPAAALAPHNVLLTTRWMLVVPRARAGCAGVNVNGLGFMGSLLVHADGDGGGAGGAPDVKPMSVLSCVTVP 4602
            P  L A       A+ AAG L+PI T    V DGG+ F+V  + A      AAK                               DPF     +  + VA  VPP+HV+VLNKFP L GH LLVT  F  Q   L  GD  A +  +A    +GF+N   EAGASQ HKH+QL P     P      LP+               AA  +EA   R+P   F+H    LP  PE+            AG+ L A+Y ALL   G+   AAA G+                            P+N+LLT  WML+VPR+R   AGV+VNGLGF GSL      D  G       +PM+VL  V  P
Sbjct:   10 PGTLAALAASQVRAALAAGALRPIPTEAVTVRDGGMRFVVRHLPAL-----AAKPR--------------------PDWSGPPRDDPFLPP--EPPLTVA-SVPPDHVIVLNKFPVLPGHLLLVTRGFEHQERLLRPGDLEALWRCMAEIPGLGFYNGGVEAGASQPHKHLQLAPY----PLGAGEDLPL---------------AALAAEARGERVPGLPFRHAFARLPALPEAPAA--------AAGV-LHALYRALLEAAGVGVRAAADGERQGR------------------------PYNLLLTREWMLLVPRSRERYAGVSVNGLGFAGSLFAP---DRAGLARLLAARPMTVLRAVADP 292          
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: A0A2N7XAK9_9BURK (Phosphorylase n=2 Tax=Trinickia symbiotica TaxID=863227 RepID=A0A2N7XAK9_9BURK)

HSP 1 Score: 128 bits (322), Expect = 1.370e-28
Identity = 125/380 (32.89%), Postives = 170/380 (44.74%), Query Frame = 1
Query: 3511 PRDLPAAITRATHASAAAGLLKPIATSCRRVHDGGIDFIVSTVSAARQAEKAAKSNLTPGAADGGXXXXXXXXXXXXXXXXXXARDPFARESRDARMVVAPRVPPEHVLVLNKFPTLAGHALLVTDAFREQATPLTAGDFAAWYAVV---------------AAADAVGFFNSAAEAGASQRHKHMQLVPLASFAPCTQSRGLPIDSAISMATARTSTVTAANDSEAAIFRLPNFKFKHGLTLLPPESALLHGXXXXXXXAGMPLLAIYSALLRRTGLLDCAAAPGDCAFAGGAGSSGCGDSGGGSTVAPAAALAPHNVLLTTRWMLVVPRARAGCA-GVNVNGLGFMGSLLVHADGDGGGAGGAPDVKPMSVLSCVTVP 4602
            P  L +AI R T  +   G L+PI T+   + DGG+ F+V  VS+  +  +   ++ T  ++                       DPF     D  + VA  + P HV +LNKF  +  H L+VT AF EQ   L   DF AW A +               +++ A+GF+N    AGASQRHKHMQLVPL   A   Q   LPI+  +S A A  + V A          L    F H    LPP  A             +  L +Y  L+   GL+D  + PG                      APA   +P+N+LLT RWML+VPR RA CA GV++N LGF GSL +    D G       + PM++L  V++P
Sbjct:    7 PNTLLSAIVRRTAHALECGALRPIETASIALDDGGVRFVVRQVSSLARKTRERGAHATNSSSP--------------------PVDPFLPYDPD--LFVAD-ITPTHVALLNKFNVIDHHLLIVTRAFEEQEALLGIDDFTAWLACLTQFEPPGVRPPGSPASSSGALGFYNGGEAAGASQRHKHMQLVPLP-LAADAQGLSLPIEPLVSAALATGADVAA----------LDGLPFAHAFAPLPPAPA------------PVAALDLYLRLMEALGLID-KSGPG----------------------APARQASPYNLLLTPRWMLLVPR-RAECADGVSINALGFAGSLFLR---DAGQMETVRRLGPMTLLERVSMP 313          
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: A0A564WEF7_9PROT (ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) n=2 Tax=root TaxID=1 RepID=A0A564WEF7_9PROT)

HSP 1 Score: 120 bits (301), Expect = 6.020e-26
Identity = 110/340 (32.35%), Postives = 146/340 (42.94%), Query Frame = 1
Query: 3505 PLPRDLPAAITRATHASAAAGLLKPIATSCRRVHDGGIDFIVSTVSAARQAEKAAKSNLTPGAADGGXXXXXXXXXXXXXXXXXXARDPFARESRDARMVVAPRVPPEHVLVLNKFPTLAGHALLVTDAFREQATPLTAGDFAAWYAVVAAADAVGFFNSAAEAGASQRHKHMQLVPLASFAPCTQSRGLPIDSAISMATARTSTVTAANDSEAAIFRLPNFKFKHGLTLLPPESALLHGXXXXXXXAGMPLLAIYSALLRRTGLLDCAAAPGDCAFAGGAGSSGCGDSGGGSTVAPAAALAPHNVLLTTRWMLVVPRARAGCAGVNVNGLGFMGSLLVH 4524
            PLP+       RA HA A  G L+PI T  R + DGGI F++  VS+ R+  +    NL      G                     +PF     D  + VA R+ P HV +LNKF  +  H L+VT A+ +Q   LT GDFAA    + A   +GF+N  + AGASQ HKH+QL+PL       +   +PI   ++            ND+  A   LP   F+H    L  E A           A     A+Y   L  TG+   A A G+   A                        P+N L+T  WML+VPR R    G++VN LGF GSL V 
Sbjct:    4 PLPQLRETVQARARHALAC-GALRPIETEQRFIDDGGIRFVIRMVSSLREKAERQAQNLAAALQSG------------------RQHNPFLPYDED--LFVA-RLSPAHVCLLNKFNVIDHHLLIVTSAYEDQEMLLTEGDFAALKVCLDALGGLGFYNGGSCAGASQPHKHLQLIPLPI---ADEGPAIPIAPLLA---------NTGNDAPTA---LPGLPFRHAYARLGAEHAGTSATGIGTWAAATH--AVYRQALAATGIGAVACAGGERQGA------------------------PYNFLMTHAWMLIVPRTREVFEGISVNALGFAGSLFVR 280          
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: A0A4U1IFM8_9BURK (Phosphorylase n=1 Tax=Trinickia sp. 7GSK02 TaxID=2571161 RepID=A0A4U1IFM8_9BURK)

HSP 1 Score: 120 bits (301), Expect = 7.650e-26
Identity = 121/367 (32.97%), Postives = 161/367 (43.87%), Query Frame = 1
Query: 3511 PRDLPAAITRATHASAAAGLLKPIATSCRRVHDGGIDFIVSTVS--AARQAEKAAKSNLTPGAADGGXXXXXXXXXXXXXXXXXXARDPFARESRDARMVVAPRVPPEHVLVLNKFPTLAGHALLVTDAFREQATPLTAGDFAAWYAVVAAADAVGFFNSAAEAGASQRHKHMQLVPLASFAPCTQSRGLPIDSAISMATARTSTVTAANDSEAAIFRLPNFKFKHGLTLLPPESALLHGXXXXXXXAGMPLLAIYSALLRRTGLLDCAAAPGDCAFAGGAGSSGCGDSGGGSTVAPAAAL-APHNVLLTTRWMLVVPRARAGCAGVNVNGLGFMGSLLVHADGDGGGAGGAPDVKPMSVLSCVTVP 4602
            P  L  AI + T  +   G L+PIA+  R + D G+ FIV  VS  A + A K A +  T  +                        +PF     D  + VA  +   H  +LNKF  +  H L+VT +F  Q TPL A DFAAW A +A  D +GF+NS  EAGASQ HKH+Q+VPL   A   +   LPI+  +           AA     AI  LP   F+H    L P              AG    A ++A      LL+    P   + +             G T  PA +  AP+N+L+T+ WML+VPR+      V VN LGF GSL V    D         + PM+VL  V +P
Sbjct:    9 PGTLGPAIEKQTSHALHCGALQPIASDERTIDDAGVRFIVRQVSSLARKNAAKTAPAARTVASVP---------------------VNPFL--PHDPNLFVAD-ISETHFALLNKFNVIDHHLLIVTRSFIPQDTPLDAADFAAWLACLAEFDGLGFYNSCTEAGASQPHKHLQIVPLPLGAAGLR---LPIEPLV-----------AAAQWRGAIGTLPGLPFRHAFAALDPA-------------AGDSPEAAHAAADHYRALLEAVTGPRPNSAS----------DAHGETPRPAPSRPAPYNLLITSHWMLLVPRSAQSVESVEVNALGFAGSLFVR---DASQMQVVERLGPMNVLRRVAMP 311          
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: UPI000E245E60 (phosphorylase n=1 Tax=Trinickia diaoshuihuensis TaxID=2292265 RepID=UPI000E245E60)

HSP 1 Score: 118 bits (296), Expect = 2.400e-25
Identity = 126/378 (33.33%), Postives = 164/378 (43.39%), Query Frame = 1
Query: 3478 SSGALQRGQPLPRDLPAAITRATHASAAAGLLKPIATSCRRVHDGGIDFIVSTVSAARQAEKAAKSNLTPGAADGGXXXXXXXXXXXXXXXXXXARDPFARESRDARMVVAPRVPPEHVLVLNKFPTLAGHALLVTDAFREQATPLTAGDFAAWYAVVAAADAVGFFNSAAEAGASQRHKHMQLVPLASFAPCTQS-RGLPIDSAISMATARTSTVTAANDSEAAIFRLPNFKFKHGLTLLPPESALLHGXXXXXXXAGMPLLAI--YSALLRRTGLLDCAAAPGDCAFAGGAGSSGCGDSGGGSTVAPAAALAPHNVLLTTRWMLVVPRARAGCAGVNVNGLGFMGSLLVHADGDGGGAGGAPDVKPMSVLSCVTVP 4602
            +S + QRG      L   + R T  + A G L PI T+   + D GI F+V  VS+  +  K A +  + GA                        DPF     D  + VA  V P H  +LNKF  +  H L+VT  F  Q   L   DFAAW+A +   D +GF+N   +AGASQ HKH+Q+VPL    P       +PID           T+  A  +E+AI RLP   F+H  T L P S            + MP  A   Y ALL   GL       G    AG A  S                 AP+N+LLT +WML+VPR+     G+ VN LGF GSL V    D         + PM++L  V +P
Sbjct:    2 TSNSFQRGT-----LWTTLARRTAHALACGALCPIETTQTTLDDAGIRFVVRQVSSLMR--KPAATKRSTGACV----------------------DPFLPHDPD--LFVAD-VSPTHFALLNKFNVIDHHLLIVTREFVPQEALLDLDDFAAWFACLNEFDGLGFYNGGRDAGASQPHKHLQIVPL----PLGDGGEAIPID-----------TLIDATANESAIVRLPGLPFEHAFTRLTPGSG-----------SEMPEQARERYRALLHTVGL-------GAIDVAGRAHQS-----------------APYNLLLTPKWMLLVPRSAEQVDGIAVNALGFAGSLFVKTAQD---MEAVRAMGPMTLLRRVGLP 294          
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Match: A0A1A9NBL7_9BURK (Phosphorylase n=1 Tax=Paraburkholderia ginsengiterrae TaxID=1462993 RepID=A0A1A9NBL7_9BURK)

HSP 1 Score: 118 bits (295), Expect = 3.800e-25
Identity = 117/359 (32.59%), Postives = 162/359 (45.13%), Query Frame = 1
Query: 3529 AITRATHASAAAGLLKPIATSCRRVHDGGIDFIVSTVSAARQAEKAAKSNLTPGAADGGXXXXXXXXXXXXXXXXXXARDPFARESRDARMVVAPRVPPEHVLVLNKFPTLAGHALLVTDAFREQATPLTAGDFAAWYAVVAAADAVGFFNSAAEAGASQRHKHMQLVPLASFAPCTQSRGLPIDSAISMATARTSTVTAANDSEAAIFRLPNFKFKHGLTLLPPESAL-LHGXXXXXXXAGMPLLAIYSALLRRTGLLDCAAAPGDCAFAGGAGSSGCGDSGGGSTVAPAAALAPHNVLLTTRWMLVVPRARAGCAGVNVNGLGFMGSLLVHADGDGGGAGGAPDVKPMSVLSCVTVP 4602
            AI R T  +   G L+PI T+   + + GI F+V  VS+    E++ +++ T                         A +PF     D  + VA  V   HV +LNKF  +  H L+VT +FR Q   L   DFAA  A +A  D + F+N  A+AGASQ HKH+Q+VPL    P  ++ GLP+     +A+AR          E AI  +P   F+H L  + P SA  LH            +L  Y ALL  TGL       G+   +                       AP+N+L+T RWML VPR+     G++VN LGF GSL V    D        ++ PM++L  V VP
Sbjct:   14 AILRQTEHALRRGALRPIETTQTLIEEDGIPFLVRQVSSLASKEQSRQADKTT-------------------VRDRRAFNPFLPYDPD--LFVAD-VSDTHVALLNKFNVIDHHLLIVTRSFRPQEALLDLADFAALSACMAEFDGLAFYNGGAQAGASQPHKHLQIVPL----PLGEA-GLPLPIEPVLASAR---------MEGAIGTMPGLTFRHALAQMKPASAASLH--------TAHTMLDCYGALLEATGL-RAIKMNGELHHS-----------------------APYNLLVTRRWMLFVPRSSECAEGISVNALGFAGSLFVR---DAVQMQVIRELGPMNLLQRVAVP 301          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836C9H0_9STRA6.810e-277100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAI7_9STRA9.780e-1331.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
BLAST of jgi.p|Trimin1|350994 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9Y6_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FJI7_ECTSI4.510e-16646.62Pleckstrin homology (PH) domain-containing protein... [more]
A0A6H5L694_9PHAE2.300e-3634.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQY6_ECTSI2.440e-3436.86Ap4A phosphorylase II n=1 Tax=Ectocarpus siliculos... [more]
A0A3N1YAM4_9GAMM4.160e-2934.43ATP adenylyltransferase n=1 Tax=Inmirania thermoth... [more]
A0A2N7XAK9_9BURK1.370e-2832.89Phosphorylase n=2 Tax=Trinickia symbiotica TaxID=8... [more]
A0A564WEF7_9PROT6.020e-2632.35ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphos... [more]
A0A4U1IFM8_9BURK7.650e-2632.97Phosphorylase n=1 Tax=Trinickia sp. 7GSK02 TaxID=2... [more]
UPI000E245E602.400e-2533.33phosphorylase n=1 Tax=Trinickia diaoshuihuensis Ta... [more]
A0A1A9NBL7_9BURK3.800e-2532.59Phosphorylase n=1 Tax=Paraburkholderia ginsengiter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:526107..528830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350994|estExt_Genemark1.C_Ctg_770047
Hectar predicted targeting categoryother localisation
TranscriptId351316
TrackFilteredModels1
ProteinId350994
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350994gene_12483Tribonema minus UTEX_B_3156 geneContig_77 526107..528830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350994Trimin1|350994|estExt_Genemark1.C_Ctg_770047Tribonema minus UTEX_B_3156 polypeptideContig_77 526107..528830 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12483_4exon_12483_4Tribonema minus UTEX_B_3156 exonContig_77 526107..526872 -
exon_12483_3exon_12483_3Tribonema minus UTEX_B_3156 exonContig_77 527992..528431 -
exon_12483_2exon_12483_2Tribonema minus UTEX_B_3156 exonContig_77 528491..528517 -
exon_12483_1exon_12483_1Tribonema minus UTEX_B_3156 exonContig_77 528699..528830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12483CDS_12483Tribonema minus UTEX_B_3156 CDSContig_77 528699..528830 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12483 ID=mRNA_12483|Name=jgi.p|Trimin1|350994|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1365bp|location=Sequence derived from alignment at Contig_77:526107..528830- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCATCCTGGATGCAGCAGGCATGCTGCAACGCTCCGGCAAGGA
GCATTCCGGACAGCAGCCAAACCTTCAGGATCAGCTGCAGTTCGATCGCA
GCAGACCTTCTCTGTGCTTCAACATCGCCAGGCTGCAGCACCAGATGCAG
CAGCAGCAGTTCGCCCCTCCAGGCACCTACTCTCTGTCGGAGACCTCCAG
CTCCGCAAGCCTCATCGCCAGCCCCGCTGTGAGCGCTCCACTTCCTACGC
ATGTGGCCCACCGCCACCTGGCCAAGTGCCTGTCGGATCCAGCACTTCAC
ATGGCGGCTACAACGGCGCAGGAGATGATACGGGGGACCGATTTCTGGCG
AGCTTTGAGGGCTGGCGTGGACGTCCGCAAGCACGCAGTGCCAGGGTGGA
GAGATGGGTTCAGCGGCAGCCTCGTGTTACCCTATGCGTTCTCCGACAAT
GACGTGACTTCGTCGGAGGCCGGAGACGATGTGGGTGCCGGGGGCTCGGC
GCGGCGGAGGCGGTGGCTACGCAAGCCCAAACCTGTCAGTGACGATGGGA
AGGGAATGGTGACTCTGTTCATCGATGCAGATGGAGACAGCTTGTGCTGG
TGCAAGCTCGGCCAGCCCGTCCTGCGCCGCGACCCGCGCTATGCGATCCG
CATCGGCGACGTGCGCCACGTGTGCGTCGCGCCGCCGTCGCCTCGCGACG
GGCGCGCGCTGCCGGCCATCACGCTCTCCACGCCGACGCGCATCCTCTCG
TTCTCGGTGGACGGCCGCGCGCTGCACGCGCTGCTCGCCGACACGCTGCG
CAGCGTCGCGGACCTCAACGCCGCCCTCTTCTCCGCGGCGCAGCGCCCGC
AGCACCGCCCGTTCTACAGCGCGAGCGCCTTTGGCGGCAGCGGCGGCGGC
AGCAGCGGCGGCGGCGGCAGCGGCGGCGCGGCGCTCTACGCCTCGACGCC
CGCCAGCGGCGGCGGCGGCGGCGCGCGCCTGCCGCCGCTGAGCCGCGCTT
CCGCGCCGCTGGACCACGTGCTGCCGCCGCCGCGCGTGCCGCGTGTGGCG
CACATAGGCCGCCTGTCGGGCGGTCTGGGCGTACAGCGCCGCGGTTCGCT
TGACGGTGGCGGCGGCAGCGACGGCGCCCGCGGTCTGCCGCCGCGCAGCG
CGTCCGTGCCGTTCGACCTGCACGCCGCTTGCGACCTGTCTGCCGTCTCC
GCTGCCGCCGCAGTTGAAGTTGAAGTTTTGGCGCGGGCTGCGGCGGCGGC
GGCGGAGGCGGCGGCGCCAGCGCAGGCGGCGGCGGTGGCGGCGCCGGGCG
CTGCGTGCGATGATGATGACGTTACCGGCTGCGCAGATGCGCCGCAGCCG
GAGGTGCCGCAGTAG
back to top

protein sequence of jgi.p|Trimin1|350994

>Trimin1|350994|estExt_Genemark1.C_Ctg_770047 ID=Trimin1|350994|estExt_Genemark1.C_Ctg_770047|Name=jgi.p|Trimin1|350994|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=455bp
MSRILDAAGMLQRSGKEHSGQQPNLQDQLQFDRSRPSLCFNIARLQHQMQ
QQQFAPPGTYSLSETSSSASLIASPAVSAPLPTHVAHRHLAKCLSDPALH
MAATTAQEMIRGTDFWRALRAGVDVRKHAVPGWRDGFSGSLVLPYAFSDN
DVTSSEAGDDVGAGGSARRRRWLRKPKPVSDDGKGMVTLFIDADGDSLCW
CKLGQPVLRRDPRYAIRIGDVRHVCVAPPSPRDGRALPAITLSTPTRILS
FSVDGRALHALLADTLRSVADLNAALFSAAQRPQHRPFYSASAFGGSGGG
SSGGGGSGGAALYASTPASGGGGGARLPPLSRASAPLDHVLPPPRVPRVA
HIGRLSGGLGVQRRGSLDGGGGSDGARGLPPRSASVPFDLHAACDLSAVS
AAAAVEVEVLARAAAAAAEAAAPAQAAAVAAPGAACDDDDVTGCADAPQP
EVPQ*
back to top

mRNA from alignment at Contig_77:526107..528830-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12483 ID=mRNA_12483|Name=jgi.p|Trimin1|350994|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2724bp|location=Sequence derived from alignment at Contig_77:526107..528830- (Tribonema minus UTEX_B_3156 )
ATGTCGCGCATCCTGGATGCAGCAGGCATGCTGCAACGCTCCGGCAAGGA GCATTCCGGACAGCAGCCAAACCTTCAGGATCAGCTGCAGTTCGATCGCA GCAGACCTTCTCTGTGCTTCAACATCGCCAGGGTGCTGCTGGCTGCGCGC TGGAAGCAGAAGAGGCTCTCGGCGGGAGCTGCCAGTGCTGCACCAGCGGC AATCACACCGGACACTGCTCTGGACACAGCTCCCTGTACTTGCGCCAGCG TGTCGAGCCCCGATGAATTTCCTCCGACAACCAAAGCCCCTGCCTGCCCT CCGTCGCCCGCAGCTGCAGCACCAGATGCAGCAGCAGCAGGTGATGGAAA ACGGAGCACAGCCATACAGGTAGACACAACGGCCCCCCCATGTTACCAGT TCGCCCCTCCAGGCACCTACTCTCTGTCGGAGACCTCCAGCTCCGCAAGC CTCATCGCCAGCCCCGCTGTGAGCGCTCCACTTCCTACGCATGTGGCCCA CCGCCACCTGGCCAAGTGCCTGTCGGATCCAGCACTTCACATGGCGGCTA CAACGGCGCAGGAGATGATACGGGGGACCGATTTCTGGCGAGCTTTGAGG GCTGGCGTGGACGTCCGCAAGCACGCAGTGCCAGGGTGGAGAGATGGGTT CAGCGGCAGCCTCGTGTTACCCTATGCGTTCTCCGACAATGACGTGACTT CGTCGGAGGCCGGAGACGATGTGGGTGCCGGGGGCTCGGCGCGGCGGAGG CGGTGGCTACGCAAGCCCAAACCTGTCAGTGACGATGGGAAGGGAATGGT GACTCTGTTCATCGATGCAGATGGAGACAGCTTGTGCTGGTGAGTGAGGA TCTTCTGGCGCTTTGCTCTTGCCACTGCGCTGTACGCTTGTGTCCTGTCG TGCTCAATTGTGTCGATTAGGACTCAAGATCATTGGTACTGCTCTTGGCT GTCGATGCGCCTGAGCTTTGGTCCGTGCTGCAGCTGTGGAGATCCATGGA ATGGCCTCTTGGAAGTTCAACAGTTGGCTGTCTCTGGCAGTTGTGGCGTT GTTACGGTGAACCCATCACCACCATTGGCGTAGATGCTTTCGCGCGCAGC AACTTCACGCACCTGCTGCAATCACGCGGCAGTGAAACTGGGGCTGATAT GTGTTATGCAGTGACTTGCCACCAGCTACAGCAGCACATGTCTATGCAGC TTGATCAAGAAGCCGTAGTGCGCTCCGCTCATGCTCATGGCCTGTGCTTA GCGTGGTCAACATGATGTGTCCCTTGTTTTCCAGGGTGAGGTCAGCTTTA TGCGCTCTGCCGCCAAGGCATTGGTGGCAGTGCTCGCACGCCATGAGCGT TGCGGCAGACCAATGCAGCTTGCATTTCACACTGCGCCATCTCGCAGTAT TCATTGGGATGGTGCTGGCTGATGAGCAACCTCAGCTGGCGCAACTTGAT GCGCTGGTGCCACCAAATCCGCCTCACCCAGCCCATCCTCATTGGGTCCT CCAGCGCAGTCGTTGCGCTGCTTGCTGTGCTGCATGAGAGTGGAGTACCA AGAGCGAGGCGGGATGTGCATGCGTGCTCTGCGATGGAAGCGGTTTACAG TAGCCTTTTTAGGCTCTTCACTGGCCTCCGCACGCCAGTTCGCGCTTGCC CGACACCGATGGGCCCCTCACTTGCCACTTCTTGTTGCAATTCAGTGGCT CGCCATGGCGGCCCCCTCCCCAGCCCTCTCGTCACACACACACACACAGA TGCACAGTGACGCGCAGCACCCCATCTTTACAGCAGTCCTCGCCCCCTGC TGCCCCCCCCCCCCGCCGCTGCTGCCGCAGCGCAGGTCTCACACAAGCAC ACACACATACACACACACACACACACACACACACACACACAACGACGCGC AGCACCCGTCTGACAGCAGCGCTCCACCCCCTGCCAATTCCCGCCGCCGC TGCCGCAGGTGCAAGCTCGGCCAGCCCGTCCTGCGCCGCGACCCGCGCTA TGCGATCCGCATCGGCGACGTGCGCCACGTGTGCGTCGCGCCGCCGTCGC CTCGCGACGGGCGCGCGCTGCCGGCCATCACGCTCTCCACGCCGACGCGC ATCCTCTCGTTCTCGGTGGACGGCCGCGCGCTGCACGCGCTGCTCGCCGA CACGCTGCGCAGCGTCGCGGACCTCAACGCCGCCCTCTTCTCCGCGGCGC AGCGCCCGCAGCACCGCCCGTTCTACAGCGCGAGCGCCTTTGGCGGCAGC GGCGGCGGCAGCAGCGGCGGCGGCGGCAGCGGCGGCGCGGCGCTCTACGC CTCGACGCCCGCCAGCGGCGGCGGCGGCGGCGCGCGCCTGCCGCCGCTGA GCCGCGCTTCCGCGCCGCTGGACCACGTGCTGCCGCCGCCGCGCGTGCCG CGTGTGGCGCACATAGGCCGCCTGTCGGGCGGTCTGGGCGTACAGCGCCG CGGTTCGCTTGACGGTGGCGGCGGCAGCGACGGCGCCCGCGGTCTGCCGC CGCGCAGCGCGTCCGTGCCGTTCGACCTGCACGCCGCTTGCGACCTGTCT GCCGTCTCCGCTGCCGCCGCAGTTGAAGTTGAAGTTTTGGCGCGGGCTGC GGCGGCGGCGGCGGAGGCGGCGGCGCCAGCGCAGGCGGCGGCGGTGGCGG CGCCGGGCGCTGCGTGCGATGATGATGACGTTACCGGCTGCGCAGATGCG CCGCAGCCGGAGGTGCCGCAGTAG
back to top

Coding sequence (CDS) from alignment at Contig_77:526107..528830-

>mRNA_12483 ID=mRNA_12483|Name=jgi.p|Trimin1|350994|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1365bp|location=Sequence derived from alignment at Contig_77:526107..528830- (Tribonema minus UTEX_B_3156 )
ATGTCGCGCATCCTGGATGCAGCAGGCATGCTGCAACGCTCCGGCAAGGA
GCATTCCGGACAGCAGCCAAACCTTCAGGATCAGCTGCAGTTCGATCGCA
GCAGACCTTCTCTGTGCTTCAACATCGCCAGGCTGCAGCACCAGATGCAG
CAGCAGCAGTTCGCCCCTCCAGGCACCTACTCTCTGTCGGAGACCTCCAG
CTCCGCAAGCCTCATCGCCAGCCCCGCTGTGAGCGCTCCACTTCCTACGC
ATGTGGCCCACCGCCACCTGGCCAAGTGCCTGTCGGATCCAGCACTTCAC
ATGGCGGCTACAACGGCGCAGGAGATGATACGGGGGACCGATTTCTGGCG
AGCTTTGAGGGCTGGCGTGGACGTCCGCAAGCACGCAGTGCCAGGGTGGA
GAGATGGGTTCAGCGGCAGCCTCGTGTTACCCTATGCGTTCTCCGACAAT
GACGTGACTTCGTCGGAGGCCGGAGACGATGTGGGTGCCGGGGGCTCGGC
GCGGCGGAGGCGGTGGCTACGCAAGCCCAAACCTGTCAGTGACGATGGGA
AGGGAATGGTGACTCTGTTCATCGATGCAGATGGAGACAGCTTGTGCTGG
TGCAAGCTCGGCCAGCCCGTCCTGCGCCGCGACCCGCGCTATGCGATCCG
CATCGGCGACGTGCGCCACGTGTGCGTCGCGCCGCCGTCGCCTCGCGACG
GGCGCGCGCTGCCGGCCATCACGCTCTCCACGCCGACGCGCATCCTCTCG
TTCTCGGTGGACGGCCGCGCGCTGCACGCGCTGCTCGCCGACACGCTGCG
CAGCGTCGCGGACCTCAACGCCGCCCTCTTCTCCGCGGCGCAGCGCCCGC
AGCACCGCCCGTTCTACAGCGCGAGCGCCTTTGGCGGCAGCGGCGGCGGC
AGCAGCGGCGGCGGCGGCAGCGGCGGCGCGGCGCTCTACGCCTCGACGCC
CGCCAGCGGCGGCGGCGGCGGCGCGCGCCTGCCGCCGCTGAGCCGCGCTT
CCGCGCCGCTGGACCACGTGCTGCCGCCGCCGCGCGTGCCGCGTGTGGCG
CACATAGGCCGCCTGTCGGGCGGTCTGGGCGTACAGCGCCGCGGTTCGCT
TGACGGTGGCGGCGGCAGCGACGGCGCCCGCGGTCTGCCGCCGCGCAGCG
CGTCCGTGCCGTTCGACCTGCACGCCGCTTGCGACCTGTCTGCCGTCTCC
GCTGCCGCCGCAGTTGAAGTTGAAGTTTTGGCGCGGGCTGCGGCGGCGGC
GGCGGAGGCGGCGGCGCCAGCGCAGGCGGCGGCGGTGGCGGCGCCGGGCG
CTGCGTGCGATGATGATGACGTTACCGGCTGCGCAGATGCGCCGCAGCCG
GAGGTGCCGCAGTAG
back to top