mRNA_12474 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134752
Unique NamemRNA_12474
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|134752 vs. uniprot
Match: A0A835YK57_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK57_9STRA)

HSP 1 Score: 163 bits (412), Expect = 5.350e-51
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:    1 QARLYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTACALGAAPRALFRAGKFY 243
            QARLYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTACALGAAPRALFRAGKFY
Sbjct:    1 QARLYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTACALGAAPRALFRAGKFY 81          
BLAST of jgi.p|Trimin1|134752 vs. uniprot
Match: A0A835ZFW0_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.330e-27
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 QARLYYDDFEVQT-MAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTAC 195
            +ARL+Y++F+VQT +AYRAPEVLHGCPFG PAD YSLGVLLLEAVLGRPLFRTA+SR GLAIQTAC
Sbjct:  269 EARLHYENFDVQTTLAYRAPEVLHGCPFGPPADAYSLGVLLLEAVLGRPLFRTAASRAGLAIQTAC 334          
BLAST of jgi.p|Trimin1|134752 vs. uniprot
Match: A0A0M0JF16_9EUKA (Serine threonine protein kinase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JF16_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 1.200e-16
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    1 QARLYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTACALGAAPRALFRAGKF 240
            +A  Y+DDFEVQT+AYRAPEV++G PFG   D++S GV L E   GR L   A+SR GLA++ A  LG  P  LF AGK+
Sbjct:    5 EAPAYHDDFEVQTLAYRAPEVVYGVPFGCAIDLWSFGVTLAELYSGRALLH-AASRGGLAVELAGMLGQPPPRLFGAGKY 83          
BLAST of jgi.p|Trimin1|134752 vs. uniprot
Match: A0A6P8HBB1_ACTTE (uncharacterized protein LOC116290059 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HBB1_ACTTE)

HSP 1 Score: 81.3 bits (199), Expect = 3.860e-16
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   10 LYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTACALGAAPRALFRAGKFY 243
            LYYD+FE+QT+ YRAPEV+ G PFG   DM+SLG ++ E  LG PLF    S++G+  +    LG  PR  F++GKFY
Sbjct:  247 LYYDNFELQTLLYRAPEVMFGVPFGPEIDMWSLGCIVAELYLGEPLFME-QSKMGILQEMVSVLGPFPRIPFQSGKFY 323          
BLAST of jgi.p|Trimin1|134752 vs. uniprot
Match: A0A1S3IPZ5_LINUN (uncharacterized protein LOC106166302 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IPZ5_LINUN)

HSP 1 Score: 80.1 bits (196), Expect = 9.950e-16
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 QARLYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTACALGAAPRALFRAGKFY 243
            +  LYYDDFE+QT+ YRAPEV+ G PFGT  DM+SLG +L E  LG+PLF   + ++ L  Q    LG  PR L + GK++
Sbjct:  245 EVSLYYDDFELQTLLYRAPEVMFGIPFGTEVDMWSLGCILAELYLGQPLFGYGNKKLVLE-QITKVLGPFPRDLCQRGKYF 324          
BLAST of jgi.p|Trimin1|134752 vs. uniprot
Match: A0A8B7YK66_ACAPL (uncharacterized protein LOC110980534 isoform X1 n=3 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YK66_ACAPL)

HSP 1 Score: 79.7 bits (195), Expect = 1.360e-15
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   10 LYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTACALGAAPRALFRAGKFY 243
            LYYDDFE+QT+ YRAPEV++G PFG   DM+SLG +L+E  LG PLF  A ++  L  +    LG  P  +F+ GKFY
Sbjct:  249 LYYDDFELQTLLYRAPEVVYGLPFGPEIDMWSLGCILVELYLGEPLF-FAVTKEELLQKMIAVLGPLPVQIFQRGKFY 325          
BLAST of jgi.p|Trimin1|134752 vs. uniprot
Match: R1E8W4_EMIHU (Protein kinase domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E8W4_EMIHU)

HSP 1 Score: 77.4 bits (189), Expect = 5.390e-15
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 QARLYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTACALGAAPRALFRAGKFY 243
            +++ YYD F+VQT+ YRA EV+ G PFG   DM+SLGV L E   GR L + A+SR GLA+Q A  LG  P+ LF   K++
Sbjct:  141 ESKAYYDTFDVQTLGYRAQEVIFGAPFGFGIDMWSLGVTLCELFAGRYLLQ-AASRGGLAVQVAQLLGRPPQGLFDGAKYH 220          
BLAST of jgi.p|Trimin1|134752 vs. uniprot
Match: F0YIY7_AURAN (Protein kinase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIY7_AURAN)

HSP 1 Score: 77.8 bits (190), Expect = 6.400e-15
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 QARLYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLA-IQTACALGAAPRALFRAGKF 240
            +A  YYDDFE+Q++ YRAPEVL G PFG   DM+SLGV+L+EA LGR L R A +  G A      ALG  P A F   +F
Sbjct:  756 EAVRYYDDFEIQSLGYRAPEVLAGVPFGYAIDMFSLGVVLVEAALGRALLRPARADRGAARAAIEAALGPFPAARFAGARF 836          
BLAST of jgi.p|Trimin1|134752 vs. uniprot
Match: A7SKK9_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SKK9_NEMVE)

HSP 1 Score: 77.4 bits (189), Expect = 8.720e-15
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   10 LYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLF--RTASSRVGLAIQTACALGAAPRALFRAGKFY 243
            LYY+DFE+QT+ YRAPEV+ G PFG   DM+SLG +L E  LG+PLF  RT +  +   ++    LG  PR  F++GKFY
Sbjct:  222 LYYNDFELQTLLYRAPEVMFGVPFGQEIDMWSLGCILAELYLGKPLFFGRTKTEVLHEIVEI---LGPLPRVPFQSGKFY 298          
BLAST of jgi.p|Trimin1|134752 vs. uniprot
Match: UPI00148A6E9E (extracellular signal-regulated kinase 7 isoform X4 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A6E9E)

HSP 1 Score: 77.4 bits (189), Expect = 8.730e-15
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 QARLYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTACALGAAPRALFRAGKFY 243
            +  LY+ DFE+QT+ YRAPEVL G PFGT  D++SLG +L E   G PLF   +S++ +  +    LG  PR +F+ GKFY
Sbjct:   61 EVALYFKDFELQTLLYRAPEVLFGLPFGTEIDLWSLGCILAELYSGMPLF-PGTSKIPVIKEMTRLLGPFPRGVFQKGKFY 140          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134752 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YK57_9STRA5.350e-51100.00Protein kinase domain-containing protein (Fragment... [more]
A0A835ZFW0_9STRA2.330e-2783.33Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A0M0JF16_9EUKA1.200e-1655.00Serine threonine protein kinase n=1 Tax=Chrysochro... [more]
A0A6P8HBB1_ACTTE3.860e-1651.28uncharacterized protein LOC116290059 n=1 Tax=Actin... [more]
A0A1S3IPZ5_LINUN9.950e-1650.62uncharacterized protein LOC106166302 n=2 Tax=Lingu... [more]
A0A8B7YK66_ACAPL1.360e-1552.56uncharacterized protein LOC110980534 isoform X1 n=... [more]
R1E8W4_EMIHU5.390e-1550.62Protein kinase domain-containing protein n=2 Tax=E... [more]
F0YIY7_AURAN6.400e-1553.09Protein kinase domain-containing protein n=1 Tax=A... [more]
A7SKK9_NEMVE8.720e-1551.25Predicted protein n=2 Tax=Nematostella vectensis T... [more]
UPI00148A6E9E8.730e-1548.15extracellular signal-regulated kinase 7 isoform X4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:436841..437083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134752|gw1.77.36.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04111,map04111
KEGG koko:K08832,ko:K18669
EC2.7.11.1,2.7.12.1
Descriptionsulfuric ester hydrolase activity
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsCOG3119@1|root,KOG0667@1|root,KOG0667@2759|Eukaryota,KOG3867@2759|Eukaryota
Evalue1.05e-15
Seed ortholog44056.XP_009040324.1
Hectar predicted targeting categoryother localisation
TranscriptId135074
TrackFilteredModels1
ProteinId134752
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134752gene_12474Tribonema minus UTEX_B_3156 geneContig_77 436841..437083 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12474_1exon_12474_1Tribonema minus UTEX_B_3156 exonContig_77 436841..437083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12474CDS_12474Tribonema minus UTEX_B_3156 CDSContig_77 436841..437083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134752Trimin1|134752|gw1.77.36.1Tribonema minus UTEX_B_3156 polypeptideContig_77 436841..437083 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12474 ID=mRNA_12474|Name=jgi.p|Trimin1|134752|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=243bp|location=Sequence derived from alignment at Contig_77:436841..437083+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGCGCGCCTCTACTACGACGACTTCGAGGTGCAGACCATGGCGTACAG
GGCGCCCGAGGTCCTGCACGGCTGCCCCTTCGGCACCCCCGCCGACATGT
ACAGCCTCGGCGTCCTCCTGCTGGAGGCAGTGCTCGGCAGGCCCCTCTTC
CGCACCGCCAGCTCGCGCGTGGGGCTGGCGATACAGACGGCGTGCGCGCT
GGGCGCCGCGCCGCGCGCGCTGTTCCGCGCGGGAAAGTTCTAC
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protein sequence of jgi.p|Trimin1|134752

>Trimin1|134752|gw1.77.36.1 ID=Trimin1|134752|gw1.77.36.1|Name=jgi.p|Trimin1|134752|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=81bp
QARLYYDDFEVQTMAYRAPEVLHGCPFGTPADMYSLGVLLLEAVLGRPLF
RTASSRVGLAIQTACALGAAPRALFRAGKFY
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mRNA from alignment at Contig_77:436841..437083+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12474 ID=mRNA_12474|Name=jgi.p|Trimin1|134752|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=243bp|location=Sequence derived from alignment at Contig_77:436841..437083+ (Tribonema minus UTEX_B_3156 )
CAGGCGCGCCTCTACTACGACGACTTCGAGGTGCAGACCATGGCGTACAG GGCGCCCGAGGTCCTGCACGGCTGCCCCTTCGGCACCCCCGCCGACATGT ACAGCCTCGGCGTCCTCCTGCTGGAGGCAGTGCTCGGCAGGCCCCTCTTC CGCACCGCCAGCTCGCGCGTGGGGCTGGCGATACAGACGGCGTGCGCGCT GGGCGCCGCGCCGCGCGCGCTGTTCCGCGCGGGAAAGTTCTAC
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Coding sequence (CDS) from alignment at Contig_77:436841..437083+

>mRNA_12474 ID=mRNA_12474|Name=jgi.p|Trimin1|134752|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=243bp|location=Sequence derived from alignment at Contig_77:436841..437083+ (Tribonema minus UTEX_B_3156 )
CAGGCGCGCCTCTACTACGACGACTTCGAGGTGCAGACCATGGCGTACAG
GGCGCCCGAGGTCCTGCACGGCTGCCCCTTCGGCACCCCCGCCGACATGT
ACAGCCTCGGCGTCCTCCTGCTGGAGGCAGTGCTCGGCAGGCCCCTCTTC
CGCACCGCCAGCTCGCGCGTGGGGCTGGCGATACAGACGGCGTGCGCGCT
GGGCGCCGCGCCGCGCGCGCTGTTCCGCGCGGGAAAGTTCTAC
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