mRNA_12454 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350984
Unique NamemRNA_12454
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350984 vs. uniprot
Match: A0A836C8R1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8R1_9STRA)

HSP 1 Score: 363 bits (931), Expect = 6.150e-121
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 1 
Query:    1 MAQDMGAAAAAPLKAPRLGDADQPASMSTIGVTVRIFGFLGAKKFLFMALTCKSTKATYDETFSAPAQKVFVKWAWDSGLPKNGRLLAQTAADGDISLAEFLCSGETRRTREPWAMQASEAAATHGHLAFLQWARDDGMEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPLLQRLRKAVYAPWNPSTTVAAVHSGNFALLQWAVTTGCPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP 1107
            MAQDMGAAAAAPLKAPRLGDADQPASMSTIGVTVRIFGFLGAKKFLFMALTCKSTKATYDETFSAPAQKVFVKWAWDSGLPKNGRLLAQTAADGDISLAEFLCSGETRRTREPWAMQASEAAATHGHLAFLQWARDDGMEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPLLQRLRKAVYAPWNPSTTVAAVHSGNFALLQWAVTTGCPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP
Sbjct:    1 MAQDMGAAAAAPLKAPRLGDADQPASMSTIGVTVRIFGFLGAKKFLFMALTCKSTKATYDETFSAPAQKVFVKWAWDSGLPKNGRLLAQTAADGDISLAEFLCSGETRRTREPWAMQASEAAATHGHLAFLQWARDDGMEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPLLQRLRKAVYAPWNPSTTVAAVHSGNFALLQWAVTTGCPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP 369
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BLAST of jgi.p|Trimin1|350984 vs. uniprot
Match: A0A835YN49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN49_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.890e-60
Identity = 244/402 (60.70%), Postives = 261/402 (64.93%), Query Frame = 1 
Query:    1 MAQDMGAAAAA---PLKAPRLGDADQPASMSTIG--VTVRIFGFLGAKKFLFMALTCKSTKATYDETFSAP-----------------------AQKVFVKWAWDSGLPKNGRLLAQTAADGDISLAEFLCSGETRRTREPWAMQASEAAATHGHLAFLQWARDD---GMEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPLLQRLR--KAVYAPWNPSTTVAAVHSGNFALLQWAVTTGCPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP 1107
            MA D+GAA AA   PLK PRLG+A++PASM TIG  VT RIFGFLGA++FLFM LTCKS ++ Y ETFSAP                        QK  VKWAW+SGLPKNG LL Q AADGDISLAEFL SG+TRRTREPW MQASEAAA+ GHLAFLQWARD+   GMEK       XXXXXXXXXXXXXX                                                 P+   ++   A    W  +    A  +  FALLQWAVTTGCPT                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP
Sbjct:    1 MAHDIGAAEAAAPPPLKNPRLGEAEEPASMFTIGKDVTARIFGFLGARRFLFMGLTCKSARSIYVETFSAPDVSKATSLRLRDLCGFPVERRLAQQKALVKWAWESGLPKNGGLLVQAAADGDISLAEFLRSGKTRRTREPWTMQASEAAASAGHLAFLQWARDENGGGMEKWGRRVILXXXXXXXXXXXXXXHSQGCMAAGTD--------------------------------------PVAAAIKGGHADVVDWFLAHD--AKPTATFALLQWAVTTGCPTIAHTCAAAADCGQLGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP 362
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350984 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836C8R1_9STRA6.150e-121100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YN49_9STRA5.890e-6060.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:165038..166429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350984|estExt_Genemark1.C_Ctg_770020
Hectar predicted targeting categoryother localisation
TranscriptId351306
TrackFilteredModels1
ProteinId350984
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350984gene_12454Tribonema minus UTEX_B_3156 geneContig_77 165038..166429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350984Trimin1|350984|estExt_Genemark1.C_Ctg_770020Tribonema minus UTEX_B_3156 polypeptideContig_77 165038..166429 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12454_3exon_12454_3Tribonema minus UTEX_B_3156 exonContig_77 165038..165946 -
exon_12454_2exon_12454_2Tribonema minus UTEX_B_3156 exonContig_77 166015..166124 -
exon_12454_1exon_12454_1Tribonema minus UTEX_B_3156 exonContig_77 166339..166429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12454CDS_12454Tribonema minus UTEX_B_3156 CDSContig_77 166339..166429 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12454 ID=mRNA_12454|Name=jgi.p|Trimin1|350984|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1110bp|location=Sequence derived from alignment at Contig_77:165038..166429- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGGACATGGGAGCAGCAGCAGCAGCCCCTCTCAAGGCCCCACG
CCTCGGGGATGCCGATCAACCAGCGAGCATGTCCACTATCGGAGTGACTG
TACGCATCTTCGGCTTCCTGGGTGCCAAAAAATTCCTGTTCATGGCGCTC
ACGTGCAAGAGCACAAAAGCCACCTACGACGAGACGTTCAGCGCACCTGC
TCAGAAGGTGTTCGTCAAGTGGGCCTGGGATAGCGGCCTGCCCAAGAATG
GACGTCTTCTGGCGCAAACAGCTGCAGATGGCGACATCAGCCTGGCCGAG
TTCCTTTGTAGCGGGGAGACAAGAAGGACTCGAGAGCCCTGGGCCATGCA
GGCCAGCGAAGCTGCGGCAACTCACGGCCATCTGGCGTTTCTGCAGTGGG
CCCGTGACGACGGAATGGAGAAGTGGGGGCGGAGGGTGATCCTCAACGCA
GCAGCTCAAGGGCACTTGGCGCTGATCGAGTGGGCCCACAGCCAAGGCTG
CATGGCGGCAGGCACTGATCCAGTCGCTGCCGCTATAAAGGGGGGGCATG
CGGATGTGGTGGACTGGTTCCTGGCCCATGACACAAAGCCCAGTCCTGCT
TCGTGCACAGCAGCCGCAAGGAAGGGTGATTTGCCGCTGCTGCAGCGGCT
GCGCAAAGCGGTTTATGCACCATGGAATCCTAGCACCACAGTCGCCGCCG
TCCACAGCGGCAACTTTGCGCTTTTGCAATGGGCCGTCACTACCGGATGC
CCCACAAACGCGCACACGTGCGCTGCGGCCGCCGACTGCGGCCAACTGGG
CATGCTGCAGTGGCTGCGCGCGCAGGGGTGTGCCTGGGACGCAATCACAT
GCAGTGCCGCAGCGAAGGGCGGGCACCTCAGTGTGCTGCAGTGGGCGCGC
TCTCGCGGCTGCCCCTGGACCGAGTACACGTGCTTCCAAGCAGCCAGGCA
CGGTCAGCTTGAGGTGCTGCGGTGGGTGCGTGCGAACGGCGCGCCGTGGC
GCCGCTCTGAGTGCAGGCGTGCGGCGGCGGAGGCAAAGGCGCATGCTATA
GTGGAGTTCATTGACAGCGTGCCAGCAGGCGAGGGTGAGGGAGAGGAGAG
TGCGCCGTGA
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protein sequence of jgi.p|Trimin1|350984

>Trimin1|350984|estExt_Genemark1.C_Ctg_770020 ID=Trimin1|350984|estExt_Genemark1.C_Ctg_770020|Name=jgi.p|Trimin1|350984|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=370bp
MAQDMGAAAAAPLKAPRLGDADQPASMSTIGVTVRIFGFLGAKKFLFMAL
TCKSTKATYDETFSAPAQKVFVKWAWDSGLPKNGRLLAQTAADGDISLAE
FLCSGETRRTREPWAMQASEAAATHGHLAFLQWARDDGMEKWGRRVILNA
AAQGHLALIEWAHSQGCMAAGTDPVAAAIKGGHADVVDWFLAHDTKPSPA
SCTAAARKGDLPLLQRLRKAVYAPWNPSTTVAAVHSGNFALLQWAVTTGC
PTNAHTCAAAADCGQLGMLQWLRAQGCAWDAITCSAAAKGGHLSVLQWAR
SRGCPWTEYTCFQAARHGQLEVLRWVRANGAPWRRSECRRAAAEAKAHAI
VEFIDSVPAGEGEGEESAP*
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mRNA from alignment at Contig_77:165038..166429-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12454 ID=mRNA_12454|Name=jgi.p|Trimin1|350984|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1392bp|location=Sequence derived from alignment at Contig_77:165038..166429- (Tribonema minus UTEX_B_3156 )
ATGGCGCAGGACATGGGAGCAGCAGCAGCAGCCCCTCTCAAGGCCCCACG
CCTCGGGGATGCCGATCAACCAGCGAGCATGTCCACTATCGGTGAGTGTT
GCTTCGGCTTCCAAGTGAAGTCCACAAGTGCGTGACACAGTGTCACACTG
TGAGGGAGCGTATCCAGCAGAAGCTGCACGAAGCAGCGACTGTGCAGATC
AAATCTTTTGACCGTTTAACATCCAGCTGCAGCTGCACGAAGCAGCGAGT
CTGCAGATTCAAATTTTCTAACAGTCCTCCCCGTTGCTGGTGCTCCACAG
GCAAGGAGTGACTGTACGCATCTTCGGCTTCCTGGGTGCCAAAAAATTCC
TGTTCATGGCGCTCACGTGCAAGAGCACAAAAGCCACCTACGACGAGACG
TTCAGCGCACCTGCTGTCAGCAAGATGACATCTCTGCGCCTCTGGGACTG
CGTGGTTTGTCAGTGGAACGTCGTCTGGCGCAGCAGAAGGTGTTCGTCAA
GTGGGCCTGGGATAGCGGCCTGCCCAAGAATGGACGTCTTCTGGCGCAAA
CAGCTGCAGATGGCGACATCAGCCTGGCCGAGTTCCTTTGTAGCGGGGAG
ACAAGAAGGACTCGAGAGCCCTGGGCCATGCAGGCCAGCGAAGCTGCGGC
AACTCACGGCCATCTGGCGTTTCTGCAGTGGGCCCGTGACGACGGAATGG
AGAAGTGGGGGCGGAGGGTGATCCTCAACGCAGCAGCTCAAGGGCACTTG
GCGCTGATCGAGTGGGCCCACAGCCAAGGCTGCATGGCGGCAGGCACTGA
TCCAGTCGCTGCCGCTATAAAGGGGGGGCATGCGGATGTGGTGGACTGGT
TCCTGGCCCATGACACAAAGCCCAGTCCTGCTTCGTGCACAGCAGCCGCA
AGGAAGGGTGATTTGCCGCTGCTGCAGCGGCTGCGCAAAGCGGTTTATGC
ACCATGGAATCCTAGCACCACAGTCGCCGCCGTCCACAGCGGCAACTTTG
CGCTTTTGCAATGGGCCGTCACTACCGGATGCCCCACAAACGCGCACACG
TGCGCTGCGGCCGCCGACTGCGGCCAACTGGGCATGCTGCAGTGGCTGCG
CGCGCAGGGGTGTGCCTGGGACGCAATCACATGCAGTGCCGCAGCGAAGG
GCGGGCACCTCAGTGTGCTGCAGTGGGCGCGCTCTCGCGGCTGCCCCTGG
ACCGAGTACACGTGCTTCCAAGCAGCCAGGCACGGTCAGCTTGAGGTGCT
GCGGTGGGTGCGTGCGAACGGCGCGCCGTGGCGCCGCTCTGAGTGCAGGC
GTGCGGCGGCGGAGGCAAAGGCGCATGCTATAGTGGAGTTCATTGACAGC
GTGCCAGCAGGCGAGGGTGAGGGAGAGGAGAGTGCGCCGTGA
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Coding sequence (CDS) from alignment at Contig_77:165038..166429-

>mRNA_12454 ID=mRNA_12454|Name=jgi.p|Trimin1|350984|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1110bp|location=Sequence derived from alignment at Contig_77:165038..166429- (Tribonema minus UTEX_B_3156 )
ATGGCGCAGGACATGGGAGCAGCAGCAGCAGCCCCTCTCAAGGCCCCACG
CCTCGGGGATGCCGATCAACCAGCGAGCATGTCCACTATCGGAGTGACTG
TACGCATCTTCGGCTTCCTGGGTGCCAAAAAATTCCTGTTCATGGCGCTC
ACGTGCAAGAGCACAAAAGCCACCTACGACGAGACGTTCAGCGCACCTGC
TCAGAAGGTGTTCGTCAAGTGGGCCTGGGATAGCGGCCTGCCCAAGAATG
GACGTCTTCTGGCGCAAACAGCTGCAGATGGCGACATCAGCCTGGCCGAG
TTCCTTTGTAGCGGGGAGACAAGAAGGACTCGAGAGCCCTGGGCCATGCA
GGCCAGCGAAGCTGCGGCAACTCACGGCCATCTGGCGTTTCTGCAGTGGG
CCCGTGACGACGGAATGGAGAAGTGGGGGCGGAGGGTGATCCTCAACGCA
GCAGCTCAAGGGCACTTGGCGCTGATCGAGTGGGCCCACAGCCAAGGCTG
CATGGCGGCAGGCACTGATCCAGTCGCTGCCGCTATAAAGGGGGGGCATG
CGGATGTGGTGGACTGGTTCCTGGCCCATGACACAAAGCCCAGTCCTGCT
TCGTGCACAGCAGCCGCAAGGAAGGGTGATTTGCCGCTGCTGCAGCGGCT
GCGCAAAGCGGTTTATGCACCATGGAATCCTAGCACCACAGTCGCCGCCG
TCCACAGCGGCAACTTTGCGCTTTTGCAATGGGCCGTCACTACCGGATGC
CCCACAAACGCGCACACGTGCGCTGCGGCCGCCGACTGCGGCCAACTGGG
CATGCTGCAGTGGCTGCGCGCGCAGGGGTGTGCCTGGGACGCAATCACAT
GCAGTGCCGCAGCGAAGGGCGGGCACCTCAGTGTGCTGCAGTGGGCGCGC
TCTCGCGGCTGCCCCTGGACCGAGTACACGTGCTTCCAAGCAGCCAGGCA
CGGTCAGCTTGAGGTGCTGCGGTGGGTGCGTGCGAACGGCGCGCCGTGGC
GCCGCTCTGAGTGCAGGCGTGCGGCGGCGGAGGCAAAGGCGCATGCTATA
GTGGAGTTCATTGACAGCGTGCCAGCAGGCGAGGGTGAGGGAGAGGAGAG
TGCGCCGTGA
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