mRNA_12445 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170971
Unique NamemRNA_12445
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A835YKE5_9STRA (Polymer-forming cytoskeletal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE5_9STRA)

HSP 1 Score: 280 bits (716), Expect = 2.240e-95
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1
Query:    1 MTQGAIRAVKQSASNSTTWCKTVTSFQSETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGERCCRPLSL 429
            MTQGAIRAVKQSASNSTTWCKTVTSFQSETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGERCCRPLSL
Sbjct:    1 MTQGAIRAVKQSASNSTTWCKTVTSFQSETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGERCCRPLSL 143          
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.770e-32
Identity = 62/104 (59.62%), Postives = 78/104 (75.00%), Query Frame = 1
Query:   85 ETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVH 396
            ETPETT+GE V V GELSFDRLLR+DG F G+L+S GDLV+G TG++ G++  + EV+ DG VVG+I  ++V LR  A V GNITC SL +DP V + G LNVH
Sbjct:   69 ETPETTVGENVHVKGELSFDRLLRVDGSFKGQLVSTGDLVIGATGIVRGNIEHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVH 172          
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: F0Y5F7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5F7_AURAN)

HSP 1 Score: 128 bits (322), Expect = 8.060e-32
Identity = 58/103 (56.31%), Postives = 82/103 (79.61%), Query Frame = 1
Query:   91 PETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 399
            PET IGE +S+ G+L F+RLLR+DG+F G L+S+GDL+VGP G L GDV  M +++V GKV+G+I+V +V L G A ++G+ITCK L +DPTV++VG LN++P
Sbjct:  359 PETVIGETLSIEGKLRFERLLRLDGKFEGELISEGDLIVGPQGELVGDVKTMSDIVVFGKVIGNIAVDRVELCGSASIYGDITCKVLLMDPTVVLVGNLNINP 461          
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A7S3ZTD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTD0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.280e-30
Identity = 57/103 (55.34%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   91 PETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 399
            PET IGE + + G L F+RLLR+DG+F G L+S GDL+VGP G L GDV DM +++V GKV+G+I+V  + L G A ++G++TCK+L +DPTV++VG LNV+P
Sbjct:  120 PETVIGETLQIEGTLRFERLLRLDGKFEGDLVSTGDLIVGPRGELVGDVRDMADLVVFGKVIGNINVDHLELCGAASIYGDVTCKTLLMDPTVVLVGTLNVNP 222          
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: F0VZS1_9STRA (Uncharacterized protein AlNc14C3G400 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZS1_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.210e-30
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   94 ETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEV-IVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 399
            ETTIG  V + GELSF+RLLRI+G F G+L+S+G LVVG  G L GDV  M EV I  GK+VG+I+V+KV LR +A V GNIT KS+ VDP  ++VG LNVHP
Sbjct:   92 ETTIGAAVKMRGELSFERLLRIEGEFDGKLVSKGSLVVGTKGCLLGDVDSMKEVFITGGKIVGNIAVEKVVLRDKASVFGNITAKSIKVDPDCVIVGTLNVHP 194          
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A5D6Y579_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y579_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.920e-30
Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = 1
Query:   91 PETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEV-IVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 399
            PETTIG  V + GELSF+RLLRI+G F G+L+S+G LVVG  GVLTG V +M EV +  GK+VG+I+V+K+ LR +A+V GNIT K++ +DP  +VVG LNV+P
Sbjct:   87 PETTIGVAVKMKGELSFERLLRIEGEFEGKLVSKGSLVVGAKGVLTGPVENMKEVHVTGGKIVGNITVEKLVLRDKAQVFGNITAKTVKIDPDCVVVGRLNVNP 190          
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A7Y3IS56_9BACT (Polymer-forming cytoskeletal protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7Y3IS56_9BACT)

HSP 1 Score: 111 bits (277), Expect = 2.340e-28
Identity = 59/106 (55.66%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   91 PETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISV-QKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGE 405
            PET IGE+V++ GEL F  LLRIDG F G L+SQG L+VGP G +  ++ D+ E  + GKV GDI+V +++ LRGRAEVHGNIT K L VD  V + G +NV PG 
Sbjct:   48 PETVIGEQVTIKGELCFTTLLRIDGNFEGTLVSQGKLIVGPNGSVKANI-DLEEAYISGKVEGDITVKERLHLRGRAEVHGNITAKLLSVDEGVSIFGHVNVPPGS 152          
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A6G0WCC1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCC1_9STRA)

HSP 1 Score: 105 bits (263), Expect = 8.470e-26
Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   94 ETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIV-DGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 399
            ETTIG  V + GELSF+RLLRI+G F G+L+S+G LVVG  G+L G++  M EV+V  G+V+G+I V ++ LR + ++ GN+T KS+ +DP  I+VG LN++P
Sbjct:   78 ETTIGVAVKMKGELSFERLLRIEGEFEGKLISKGSLVVGHKGLLNGNIDGMKEVLVAGGRVLGNIQVDRLVLRDKGQIFGNVTAKSVRIDPDCILVGTLNINP 180          
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: D7FI98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI98_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.010e-25
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  127 GELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVH 396
            GELSFDRLLR+DG F G+L+S GDLV+G TGV+ G++  + EV+ DG VVG+I  ++V LR  A V GNITC SL +DP V + G LNVH
Sbjct:   15 GELSFDRLLRVDGSFKGQLVSTGDLVIGATGVVRGNIDHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVH 104          
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A2E3LY81_9BACT (Polymer-forming cytoskeletal family protein n=1 Tax=Waddliaceae bacterium TaxID=2026802 RepID=A0A2E3LY81_9BACT)

HSP 1 Score: 103 bits (258), Expect = 2.740e-25
Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   76 FQSETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGER 408
             ++E PETT+GE V   GELSF+RLLRIDG   G+L S G ++VG +G +  D+  M E I++G+V G+I+V+++ LRG+A V+G+I  +S+ VD    +VG ++V P ER
Sbjct:   67 IETEKPETTLGEGVLFKGELSFERLLRIDGVMEGKLFSNGKIIVGASGSVAADIT-MREAIIEGQVEGNITVERLELRGKASVYGDICARSIIVDEDATLVGHVSVKPTER 176          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKE5_9STRA2.240e-95100.00Polymer-forming cytoskeletal-domain-containing pro... [more]
A0A6H5JN16_9PHAE3.770e-3259.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y5F7_AURAN8.060e-3256.31Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3ZTD0_9STRA1.280e-3055.34Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0VZS1_9STRA2.210e-3061.17Uncharacterized protein AlNc14C3G400 n=1 Tax=Albug... [more]
A0A5D6Y579_9STRA2.920e-3058.65Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7Y3IS56_9BACT2.340e-2855.66Polymer-forming cytoskeletal protein n=1 Tax=Chlam... [more]
A0A6G0WCC1_9STRA8.470e-2651.46Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D7FI98_ECTSI2.010e-2558.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2E3LY81_9BACT2.740e-2546.85Polymer-forming cytoskeletal family protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:82185..83078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170971|e_gw1.77.94.1
DescriptionPolymer-forming cytoskeletal
COG categoryM
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1664@1|root,2RXV0@2759|Eukaryota
Evalue1.32e-32
Seed ortholog44056.XP_009035549.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-11_001120.1
TranscriptId171293
TrackFilteredModels1
ProteinId170971
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170971gene_12445Tribonema minus UTEX_B_3156 geneContig_77 82185..83078 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12445_1exon_12445_1Tribonema minus UTEX_B_3156 exonContig_77 82185..82436 +
exon_12445_2exon_12445_2Tribonema minus UTEX_B_3156 exonContig_77 82899..83078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12445CDS_12445Tribonema minus UTEX_B_3156 CDSContig_77 82185..82436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170971Trimin1|170971|e_gw1.77.94.1Tribonema minus UTEX_B_3156 polypeptideContig_77 82185..83078 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12445 ID=mRNA_12445|Name=jgi.p|Trimin1|170971|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_77:82185..83078+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCAAGGTGCCATACGTGCAGTGAAACAATCTGCCAGTAACTCCAC
CACATGGTGCAAAACTGTCACTTCTTTTCAGTCTGAAACCCCAGAAACCA
CAATCGGCGAGCGAGTCTCTGTGAGCGGGGAGCTCTCATTTGACCGGCTG
CTGCGGATAGATGGGCGGTTTTCAGGGCGACTGCTGTCGCAGGGGGACCT
GGTGGTGGGGCCTACGGGGGTGCTGACTGGAGATGTCGTGGACATGGGAG
AGGTGATCGTGGACGGCAAGGTAGTGGGGGACATATCGGTGCAGAAGGTG
TCGCTGCGCGGGCGCGCAGAGGTACACGGCAACATCACCTGCAAATCGCT
CTGCGTGGACCCTACCGTCATTGTTGTGGGGGGGCTCAACGTGCACCCAG
GTGAGCGCTGCTGCCGACCACTATCATTATGA
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protein sequence of jgi.p|Trimin1|170971

>Trimin1|170971|e_gw1.77.94.1 ID=Trimin1|170971|e_gw1.77.94.1|Name=jgi.p|Trimin1|170971|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
MTQGAIRAVKQSASNSTTWCKTVTSFQSETPETTIGERVSVSGELSFDRL
LRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKV
SLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGERCCRPLSL*
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mRNA from alignment at Contig_77:82185..83078+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12445 ID=mRNA_12445|Name=jgi.p|Trimin1|170971|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=894bp|location=Sequence derived from alignment at Contig_77:82185..83078+ (Tribonema minus UTEX_B_3156 )
ATGACTCAAGGTGCCATACGTGCAGTGAAACAATCTGCCAGTAACTCCAC CACATGGTGCAAAACTGTCACTTCTTTTCAGTCTGAAACCCCAGAAACCA CAATCGGCGAGCGAGTCTCTGTGAGCGGGGAGCTCTCATTTGACCGGCTG CTGCGGATAGATGGGCGGTTTTCAGGGCGACTGCTGTCGCAGGGGGACCT GGTGGTGGGGCCTACGGGGGTGCTGACTGGAGATGTCGTGGACATGGGAG AGGTGAGGTTGAAAATAAGCTACTTGAAGTTTGCAGATGAGCTACTTGAA CTTCCTCTTTCTGTTATCCTCAGGCCGCACACGCTGTATTGCAGCGTGAC CACAGGGGATGGCTCATGAGATGATAATGGAAACAGACGCACTTGCTCAA TCACACTGCCGCTTTGCACCACAGTGCCTGCGTCAGACGTTTCAAAGTGA CGGTGTGAGCTTGATGTCACGTGCGGCATGCACTTCTGGGCTAGATGCAT GGCATTGTGCCAGAACTGAATGATGAACCTGAAGCTACAAACTTCCGCTG TGTCATGTGCTGACGACACGAGTGTGCCTCTGTCTACTGTTAATGTCGAC TACAGCTCCGCAACACGACAACCAATTTCACACCACGTGTATGACTCACA CGACGACTCATGCGTTCACAGCCCTTCCGGTGACATTACCCAAAATTTGT GTTTCTGGAATCAGGTGATCGTGGACGGCAAGGTAGTGGGGGACATATCG GTGCAGAAGGTGTCGCTGCGCGGGCGCGCAGAGGTACACGGCAACATCAC CTGCAAATCGCTCTGCGTGGACCCTACCGTCATTGTTGTGGGGGGGCTCA ACGTGCACCCAGGTGAGCGCTGCTGCCGACCACTATCATTATGA
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Coding sequence (CDS) from alignment at Contig_77:82185..83078+

>mRNA_12445 ID=mRNA_12445|Name=jgi.p|Trimin1|170971|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_77:82185..83078+ (Tribonema minus UTEX_B_3156 )
ATGACTCAAGGTGCCATACGTGCAGTGAAACAATCTGCCAGTAACTCCAC
CACATGGTGCAAAACTGTCACTTCTTTTCAGTCTGAAACCCCAGAAACCA
CAATCGGCGAGCGAGTCTCTGTGAGCGGGGAGCTCTCATTTGACCGGCTG
CTGCGGATAGATGGGCGGTTTTCAGGGCGACTGCTGTCGCAGGGGGACCT
GGTGGTGGGGCCTACGGGGGTGCTGACTGGAGATGTCGTGGACATGGGAG
AGGTGATCGTGGACGGCAAGGTAGTGGGGGACATATCGGTGCAGAAGGTG
TCGCTGCGCGGGCGCGCAGAGGTACACGGCAACATCACCTGCAAATCGCT
CTGCGTGGACCCTACCGTCATTGTTGTGGGGGGGCTCAACGTGCACCCAG
GTGAGCGCTGCTGCCGACCACTATCATTATGA
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