mRNA_12445 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A835YKE5_9STRA (Polymer-forming cytoskeletal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE5_9STRA) HSP 1 Score: 280 bits (716), Expect = 2.240e-95 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 Query: 1 MTQGAIRAVKQSASNSTTWCKTVTSFQSETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGERCCRPLSL 429 MTQGAIRAVKQSASNSTTWCKTVTSFQSETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGERCCRPLSL Sbjct: 1 MTQGAIRAVKQSASNSTTWCKTVTSFQSETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGERCCRPLSL 143
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE) HSP 1 Score: 124 bits (310), Expect = 3.770e-32 Identity = 62/104 (59.62%), Postives = 78/104 (75.00%), Query Frame = 1 Query: 85 ETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVH 396 ETPETT+GE V V GELSFDRLLR+DG F G+L+S GDLV+G TG++ G++ + EV+ DG VVG+I ++V LR A V GNITC SL +DP V + G LNVH Sbjct: 69 ETPETTVGENVHVKGELSFDRLLRVDGSFKGQLVSTGDLVIGATGIVRGNIEHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVH 172
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: F0Y5F7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5F7_AURAN) HSP 1 Score: 128 bits (322), Expect = 8.060e-32 Identity = 58/103 (56.31%), Postives = 82/103 (79.61%), Query Frame = 1 Query: 91 PETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 399 PET IGE +S+ G+L F+RLLR+DG+F G L+S+GDL+VGP G L GDV M +++V GKV+G+I+V +V L G A ++G+ITCK L +DPTV++VG LN++P Sbjct: 359 PETVIGETLSIEGKLRFERLLRLDGKFEGELISEGDLIVGPQGELVGDVKTMSDIVVFGKVIGNIAVDRVELCGSASIYGDITCKVLLMDPTVVLVGNLNINP 461
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A7S3ZTD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTD0_9STRA) HSP 1 Score: 123 bits (309), Expect = 1.280e-30 Identity = 57/103 (55.34%), Postives = 80/103 (77.67%), Query Frame = 1 Query: 91 PETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 399 PET IGE + + G L F+RLLR+DG+F G L+S GDL+VGP G L GDV DM +++V GKV+G+I+V + L G A ++G++TCK+L +DPTV++VG LNV+P Sbjct: 120 PETVIGETLQIEGTLRFERLLRLDGKFEGDLVSTGDLIVGPRGELVGDVRDMADLVVFGKVIGNINVDHLELCGAASIYGDVTCKTLLMDPTVVLVGTLNVNP 222
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: F0VZS1_9STRA (Uncharacterized protein AlNc14C3G400 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZS1_9STRA) HSP 1 Score: 117 bits (294), Expect = 2.210e-30 Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 1 Query: 94 ETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEV-IVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 399 ETTIG V + GELSF+RLLRI+G F G+L+S+G LVVG G L GDV M EV I GK+VG+I+V+KV LR +A V GNIT KS+ VDP ++VG LNVHP Sbjct: 92 ETTIGAAVKMRGELSFERLLRIEGEFDGKLVSKGSLVVGTKGCLLGDVDSMKEVFITGGKIVGNIAVEKVVLRDKASVFGNITAKSIKVDPDCVIVGTLNVHP 194
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A5D6Y579_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y579_9STRA) HSP 1 Score: 117 bits (294), Expect = 2.920e-30 Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = 1 Query: 91 PETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEV-IVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 399 PETTIG V + GELSF+RLLRI+G F G+L+S+G LVVG GVLTG V +M EV + GK+VG+I+V+K+ LR +A+V GNIT K++ +DP +VVG LNV+P Sbjct: 87 PETTIGVAVKMKGELSFERLLRIEGEFEGKLVSKGSLVVGAKGVLTGPVENMKEVHVTGGKIVGNITVEKLVLRDKAQVFGNITAKTVKIDPDCVVVGRLNVNP 190
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A7Y3IS56_9BACT (Polymer-forming cytoskeletal protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7Y3IS56_9BACT) HSP 1 Score: 111 bits (277), Expect = 2.340e-28 Identity = 59/106 (55.66%), Postives = 75/106 (70.75%), Query Frame = 1 Query: 91 PETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISV-QKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGE 405 PET IGE+V++ GEL F LLRIDG F G L+SQG L+VGP G + ++ D+ E + GKV GDI+V +++ LRGRAEVHGNIT K L VD V + G +NV PG Sbjct: 48 PETVIGEQVTIKGELCFTTLLRIDGNFEGTLVSQGKLIVGPNGSVKANI-DLEEAYISGKVEGDITVKERLHLRGRAEVHGNITAKLLSVDEGVSIFGHVNVPPGS 152
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A6G0WCC1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCC1_9STRA) HSP 1 Score: 105 bits (263), Expect = 8.470e-26 Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = 1 Query: 94 ETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIV-DGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHP 399 ETTIG V + GELSF+RLLRI+G F G+L+S+G LVVG G+L G++ M EV+V G+V+G+I V ++ LR + ++ GN+T KS+ +DP I+VG LN++P Sbjct: 78 ETTIGVAVKMKGELSFERLLRIEGEFEGKLISKGSLVVGHKGLLNGNIDGMKEVLVAGGRVLGNIQVDRLVLRDKGQIFGNVTAKSVRIDPDCILVGTLNINP 180
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: D7FI98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI98_ECTSI) HSP 1 Score: 104 bits (260), Expect = 2.010e-25 Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 1 Query: 127 GELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVH 396 GELSFDRLLR+DG F G+L+S GDLV+G TGV+ G++ + EV+ DG VVG+I ++V LR A V GNITC SL +DP V + G LNVH Sbjct: 15 GELSFDRLLRVDGSFKGQLVSTGDLVIGATGVVRGNIDHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVH 104
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Match: A0A2E3LY81_9BACT (Polymer-forming cytoskeletal family protein n=1 Tax=Waddliaceae bacterium TaxID=2026802 RepID=A0A2E3LY81_9BACT) HSP 1 Score: 103 bits (258), Expect = 2.740e-25 Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 1 Query: 76 FQSETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVHPGER 408 ++E PETT+GE V GELSF+RLLRIDG G+L S G ++VG +G + D+ M E I++G+V G+I+V+++ LRG+A V+G+I +S+ VD +VG ++V P ER Sbjct: 67 IETEKPETTLGEGVLFKGELSFERLLRIDGVMEGKLFSNGKIIVGASGSVAADIT-MREAIIEGQVEGNITVERLELRGKASVYGDICARSIIVDEDATLVGHVSVKPTER 176 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170971 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12445 ID=mRNA_12445|Name=jgi.p|Trimin1|170971|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_77:82185..83078+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACTCAAGGTGCCATACGTGCAGTGAAACAATCTGCCAGTAACTCCACback to top protein sequence of jgi.p|Trimin1|170971 >Trimin1|170971|e_gw1.77.94.1 ID=Trimin1|170971|e_gw1.77.94.1|Name=jgi.p|Trimin1|170971|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp MTQGAIRAVKQSASNSTTWCKTVTSFQSETPETTIGERVSVSGELSFDRLback to top mRNA from alignment at Contig_77:82185..83078+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12445 ID=mRNA_12445|Name=jgi.p|Trimin1|170971|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=894bp|location=Sequence derived from alignment at Contig_77:82185..83078+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_77:82185..83078+ >mRNA_12445 ID=mRNA_12445|Name=jgi.p|Trimin1|170971|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_77:82185..83078+ (Tribonema minus UTEX_B_3156 )back to top |