mRNA_12421 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350770
Unique NamemRNA_12421
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350770 vs. uniprot
Match: A0A836C8R4_9STRA (Ferritin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8R4_9STRA)

HSP 1 Score: 791 bits (2042), Expect = 3.390e-285
Identity = 510/510 (100.00%), Postives = 510/510 (100.00%), Query Frame = 2 
Query:    8 MMFMRGGAAGVAAAAMATGAAAFSTGGTALLRRAPIAAASRMTMSSTSGVTAKDIANGASMEKLQRQSRIKDDMKNMLLEQAHIEMSASLAYLSMSYWFDREGMEGFRDFFRKQSDEERGHSIQFLDFLSKRGAVSAITPSKLLKDPETEFQTALHAMETYLALERFVADSINSKYSKAMDAKDWPTVSFLQPFVAYQIEEEDEADSMMEQVYRLTKSKDLTQVMDINLKSGVPPGQSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSRTQSDSLRLQDSSPPHGTAVGWADMDVDPPDXXXXXXXXXXXXSGRPSKPQARASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWARLVEHATRLLADATDSAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARLAALLSGDFAELLRKTLSAAAALRAPKPNNAAMASA 1537
            MMFMRGGAAGVAAAAMATGAAAFSTGGTALLRRAPIAAASRMTMSSTSGVTAKDIANGASMEKLQRQSRIKDDMKNMLLEQAHIEMSASLAYLSMSYWFDREGMEGFRDFFRKQSDEERGHSIQFLDFLSKRGAVSAITPSKLLKDPETEFQTALHAMETYLALERFVADSINSKYSKAMDAKDWPTVSFLQPFVAYQIEEEDEADSMMEQVYRLTKSKDLTQVMDINLKSGVPPGQSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSRTQSDSLRLQDSSPPHGTAVGWADMDVDPPDXXXXXXXXXXXXSGRPSKPQARASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWARLVEHATRLLADATDSAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARLAALLSGDFAELLRKTLSAAAALRAPKPNNAAMASA
Sbjct:    1 MMFMRGGAAGVAAAAMATGAAAFSTGGTALLRRAPIAAASRMTMSSTSGVTAKDIANGASMEKLQRQSRIKDDMKNMLLEQAHIEMSASLAYLSMSYWFDREGMEGFRDFFRKQSDEERGHSIQFLDFLSKRGAVSAITPSKLLKDPETEFQTALHAMETYLALERFVADSINSKYSKAMDAKDWPTVSFLQPFVAYQIEEEDEADSMMEQVYRLTKSKDLTQVMDINLKSGVPPGQSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSRTQSDSLRLQDSSPPHGTAVGWADMDVDPPDXXXXXXXXXXXXSGRPSKPQARASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWARLVEHATRLLADATDSAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARLAALLSGDFAELLRKTLSAAAALRAPKPNNAAMASA 510
[Close]
BLAST of jgi.p|Trimin1|350770 vs. uniprot
Match: A0A836CBM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBM6_9STRA)

HSP 1 Score: 368 bits (944), Expect = 2.600e-114
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 2 
Query:  914 AGSRTQSDSLRLQDSSPPHGTAVGWADMDVDPPDXXXXXXXXXXXXSGRPSKPQARASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWARLVEHATRLLADATDSAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARLAALLSGDFAELLRKTLSAAAALRAPKPNNAAMASA 1537
            AGSRTQSDSLRLQDSSPP GTAVGWADMDVDPPDXXXXXXXXXXXXSGRPSKPQARASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWARLVEHATRLLADATDSAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARLAALLSGDFAELLRKTLSAAAALRAPKPNNAAMASA
Sbjct:   44 AGSRTQSDSLRLQDSSPPRGTAVGWADMDVDPPDXXXXXXXXXXXXSGRPSKPQARASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWARLVEHATRLLADATDSAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARLAALLSGDFAELLRKTLSAAAALRAPKPNNAAMASA 251
[Close]
BLAST of jgi.p|Trimin1|350770 vs. uniprot
Match: A0A835ZFE5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE5_9STRA)

HSP 1 Score: 357 bits (917), Expect = 5.360e-111
Identity = 190/208 (91.35%), Postives = 194/208 (93.27%), Query Frame = 2 
Query:  914 AGSRTQSDSLRLQDSSPPHGTAVGWADMDVDPPDXXXXXXXXXXXXSGRPSKPQARASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWARLVEHATRLLADATDSAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARLAALLSGDFAELLRKTLSAAAALRAPKPNNAAMASA 1537
            AGSRTQSDSLRLQDSSPPHGTAVGWADMDVDPPD            +GRPSKPQARASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWA+LVEHATRLLADAT+SAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARL ALLSGDFAELLRKTLSAAAALRAPKPNNAA A+A
Sbjct:  467 AGSRTQSDSLRLQDSSPPHGTAVGWADMDVDPPDDA----------AGRPSKPQARASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWAQLVEHATRLLADATESAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARLTALLSGDFAELLRKTLSAAAALRAPKPNNAATAAA 664
[Close]
BLAST of jgi.p|Trimin1|350770 vs. uniprot
Match: A0A835Z1U2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U2_9STRA)

HSP 1 Score: 337 bits (865), Expect = 1.240e-104
Identity = 189/192 (98.44%), Postives = 191/192 (99.48%), Query Frame = 2 
Query:  962 PPHGTAVGWADMDVDPPDXXXXXXXXXXXXSGRPSKPQARASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWARLVEHATRLLADATDSAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARLAALLSGDFAELLRKTLSAAAALRAPKPNNAAMASA 1537
            PPHGTAVGWADMD+DPPDXXXXXXXXXXXXSGRPSKPQ+RASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWARLVEHATRLLADATDSAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARLAALLSGDFAELLRKTLSAAAALRAPKPNNAA ASA
Sbjct:  333 PPHGTAVGWADMDLDPPDXXXXXXXXXXXXSGRPSKPQSRASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQCTQWARLVEHATRLLADATDSAREAARVRLHHGAGAFAHQVSQTLVQRGYRLLHLLAAMAFGRQPEGTGMPPAARLAALLSGDFAELLRKTLSAAAALRAPKPNNAATASA 524
[Close]
BLAST of jgi.p|Trimin1|350770 vs. uniprot
Match: Q2FQC4_METHJ (Ferritin and Dps n=3 Tax=Euryarchaeota TaxID=28890 RepID=Q2FQC4_METHJ)

HSP 1 Score: 92.4 bits (228), Expect = 3.370e-18
Identity = 52/146 (35.62%), Postives = 91/146 (62.33%), Query Frame = 2 
Query:  227 MKNMLLEQAHIEMSASLAYLSMSYWFDREGMEGFRDFFRKQSDEERGHSIQFLDFLSKRGAVSAITPSKLLKDPETEFQTALHAMETYLALERFVADSINSKYSKAMDAKDWPTVSFLQPFVAYQIEEEDEADSMMEQVYRLTKSK 664
            ++  L EQ + E+ ++  YLSMS WFD  G+ GF ++ R Q+ EER H+++  D++  RG  + +   + ++ P+TE++ A  A ET +A E  V   IN+  + ++  KD  TV+FLQ FV  Q+EEE+ A ++++Q+  +++ K
Sbjct:    8 VEKALNEQINAELYSAYLYLSMSSWFDSVGLRGFANWERVQAMEERDHALKIFDYVLARGGRAVM---QQIEAPQTEWRDAKDAFETQMAHELKVTSLINNLVNLSITEKDHATVNFLQWFVNEQVEEEENARTILDQLQMISQEK 150
[Close]
BLAST of jgi.p|Trimin1|350770 vs. uniprot
Match: A0A7K4B3H5_9EURY (Ferritin n=1 Tax=Methanomicrobiales archaeon TaxID=2184052 RepID=A0A7K4B3H5_9EURY)

HSP 1 Score: 90.9 bits (224), Expect = 1.090e-17
Identity = 58/170 (34.12%), Postives = 98/170 (57.65%), Query Frame = 2 
Query:  224 DMKNMLLEQAHIEMSASLAYLSMSYWFDREGMEGFRDFFRKQSDEERGHSIQFLDFLSKRGAVSAITPSKLLKDPETEFQTALHAMETYLALERFVADSINSKYSKAMDAKDWPTVSFLQPFVAYQIEEEDEADSMMEQVYRLTKSKD--LTQVMDINL--KSGVPPGQS 721
            +++  L EQ + E+ ++  YLSMS WFD  G+ GF ++ R Q+ EER H+++  D++  RG  + +   K +  P+ ++  A    ET +A E  V   IN     ++  KD  TV+FLQ FV  Q+EEE+ A ++++Q+  +++ K   L  ++D  L  ++ VPPG S
Sbjct:    4 EVEKALNEQINAELYSAYLYLSMSAWFDYAGLRGFANWERIQAMEERDHALKIFDYVLARGGRAVM---KQIDAPKADWTDAKDVFETQMAHEIKVTGLINDLVDLSISEKDHATVNFLQWFVNEQVEEEENARNILDQLKMISQEKGAGLLYMLDKELGTRTYVPPGTS 170
[Close]
BLAST of jgi.p|Trimin1|350770 vs. uniprot
Match: A0A2V2N503_9EURY (Ferritin n=2 Tax=Methanospirillum stamsii TaxID=1277351 RepID=A0A2V2N503_9EURY)

HSP 1 Score: 90.9 bits (224), Expect = 1.170e-17
Identity = 53/146 (36.30%), Postives = 88/146 (60.27%), Query Frame = 2 
Query:  227 MKNMLLEQAHIEMSASLAYLSMSYWFDREGMEGFRDFFRKQSDEERGHSIQFLDFLSKRGAVSAITPSKLLKDPETEFQTALHAMETYLALERFVADSINSKYSKAMDAKDWPTVSFLQPFVAYQIEEEDEADSMMEQVYRLTKSK 664
            ++  L EQ + E+ +S  YLSMS WFD  G+ GF ++ R Q+ EE+ H+++  D+L  RG  + +T    +  P++ +     A ET LA E  V + IN+  + ++  KD  T++FLQ FV  Q+EEED A +++EQ+  +++ K
Sbjct:    8 VEKALNEQINAELYSSYLYLSMSSWFDSVGLRGFANWERIQAMEEKDHAMKIFDYLLTRGGRAVMTK---IDAPQSVWNNPKDAFETQLAHELKVTNLINNLVNLSITEKDHATLNFLQWFVNEQVEEEDNARTILEQISMISQEK 150
[Close]
BLAST of jgi.p|Trimin1|350770 vs. uniprot
Match: A0A7K4BC43_9EURY (Ferritin n=1 Tax=Methanomicrobiales archaeon TaxID=2184052 RepID=A0A7K4BC43_9EURY)

HSP 1 Score: 89.7 bits (221), Expect = 2.770e-17
Identity = 52/146 (35.62%), Postives = 84/146 (57.53%), Query Frame = 2 
Query:  227 MKNMLLEQAHIEMSASLAYLSMSYWFDREGMEGFRDFFRKQSDEERGHSIQFLDFLSKRGAVSAITPSKLLKDPETEFQTALHAMETYLALERFVADSINSKYSKAMDAKDWPTVSFLQPFVAYQIEEEDEADSMMEQVYRLTKSK 664
            ++  L  Q + E  ++  YLSMS WFD  G+ GF ++ R Q+ EER H+++  D++  RG  + +T    +  P++ ++  L   ET  A ER V   IN   + +   KD  TV+FLQ FV  Q+EEED A ++++QV  +++ K
Sbjct:    5 VETALNNQINAEFYSAYLYLSMSSWFDSIGLRGFANWERIQAMEERDHAMKIFDYVLTRGGRALMTQ---INTPQSSWKDVLDVFETQYAHERIVTSLINDLVNLSTSQKDHATVNFLQWFVNEQVEEEDNARTILDQVKLISQEK 147
[Close]
BLAST of jgi.p|Trimin1|350770 vs. uniprot
Match: A0A7X7E181_9BACT (Ferritin n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7X7E181_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 5.170e-17
Identity = 53/146 (36.30%), Postives = 89/146 (60.96%), Query Frame = 2 
Query:  227 MKNMLLEQAHIEMSASLAYLSMSYWFDREGMEGFRDFFRKQSDEERGHSIQFLDFLSKRGAVSAITPSKLLKDPETEFQTALHAMETYLALERFVADSINSKYSKAMDAKDWPTVSFLQPFVAYQIEEEDEADSMMEQVYRLTKSK 664
            ++  L EQ + E+ ++  YLSMS WFD  G++GF ++ R Q+ EER H+++ LD+L  RG  + +T    +  P++ ++ A  A ET L+ E  V   I+S    ++  KD  TV+FLQ FV  Q+EEE+ A ++++Q+  ++  K
Sbjct:    5 VEKALNEQINAELYSAYLYLSMSSWFDATGLKGFSNWERIQTMEERDHAMKILDYLLARGGRAIMTQ---IDTPQSTWKDAKDAFETQLSHELKVTSLIHSLMDLSIAEKDHATVNFLQWFVNEQVEEEENARTILDQLKMISVEK 147
[Close]
BLAST of jgi.p|Trimin1|350770 vs. uniprot
Match: A0A4U1CFX4_9SPHI (Ferritin n=5 Tax=Pedobacter TaxID=84567 RepID=A0A4U1CFX4_9SPHI)

HSP 1 Score: 89.0 bits (219), Expect = 5.710e-17
Identity = 57/175 (32.57%), Postives = 97/175 (55.43%), Query Frame = 2 
Query:  215 IKDDMKNMLLEQAHIEMSASLAYLSMSYWFDRE-GMEGFRDFFRKQSDEERGHSIQFLDFLSKRGAVSAITPSKLLKDPETEFQTALHAMETYLALERFVADSINSKYSKAMDAKDWPTVSFLQPFVAYQIEEEDEADSMMEQVYRLTKSKDLTQVMD---INLKSGVPPGQSEG 727
            + + M N L EQ  IE  +S  YL+++ W + + G+EG+ +FF KQSDEER H ++F+ +++ R    AI P+  L  P+  +Q  +     +L  E  V+ SIN+    A++ KD+ T  FLQ ++  Q+EEE  A +M+E++  +   +     +D   + L+  V   + EG
Sbjct:    3 LSERMLNALNEQVKIEAESSQVYLAVASWLETQPGLEGYTEFFYKQSDEERHHMLKFMHYINDRDG-HAIIPA--LAMPQNNYQQVIDVFRDFLKNELEVSQSINNLVELALNEKDYLTFKFLQWYLDEQLEEEKMAKTMLEKLELVGSDRGGVYQLDKDIVGLRKKVSDTKEEG 174
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350770 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8R4_9STRA3.390e-285100.00Ferritin n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
A0A836CBM6_9STRA2.600e-11499.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZFE5_9STRA5.360e-11191.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1U2_9STRA1.240e-10498.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
Q2FQC4_METHJ3.370e-1835.62Ferritin and Dps n=3 Tax=Euryarchaeota TaxID=28890... [more]
A0A7K4B3H5_9EURY1.090e-1734.12Ferritin n=1 Tax=Methanomicrobiales archaeon TaxID... [more]
A0A2V2N503_9EURY1.170e-1736.30Ferritin n=2 Tax=Methanospirillum stamsii TaxID=12... [more]
A0A7K4BC43_9EURY2.770e-1735.62Ferritin n=1 Tax=Methanomicrobiales archaeon TaxID... [more]
A0A7X7E181_9BACT5.170e-1736.30Ferritin n=3 Tax=cellular organisms TaxID=131567 R... [more]
A0A4U1CFX4_9SPHI5.710e-1732.57Ferritin n=5 Tax=Pedobacter TaxID=84567 RepID=A0A4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:528936..536058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350770|estExt_Genemark1.C_Ctg_710056
BRITEko00000,ko01000
KEGG koko:K02217
EC1.16.3.2
DescriptionPFAM Ferritin Dps family protein
COG categoryP
Max annot lvl28890|Euryarchaeota
EggNOG OGsCOG1528@1|root,arCOG01095@2157|Archaea,2XXEN@28890|Euryarchaeota
Evalue5.48e-19
Seed ortholog323259.Mhun_0044
Hectar predicted targeting categorychloroplast
TranscriptId351092
TrackFilteredModels1
ProteinId350770
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350770gene_12421Tribonema minus UTEX_B_3156 geneContig_71 528936..536058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350770Trimin1|350770|estExt_Genemark1.C_Ctg_710056Tribonema minus UTEX_B_3156 polypeptideContig_71 528943..536058 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12421_1exon_12421_1Tribonema minus UTEX_B_3156 exonContig_71 528936..529185 +
exon_12421_2exon_12421_2Tribonema minus UTEX_B_3156 exonContig_71 529882..529961 +
exon_12421_3exon_12421_3Tribonema minus UTEX_B_3156 exonContig_71 530802..530907 +
exon_12421_4exon_12421_4Tribonema minus UTEX_B_3156 exonContig_71 531747..531851 +
exon_12421_5exon_12421_5Tribonema minus UTEX_B_3156 exonContig_71 532587..532653 +
exon_12421_6exon_12421_6Tribonema minus UTEX_B_3156 exonContig_71 533105..533148 +
exon_12421_7exon_12421_7Tribonema minus UTEX_B_3156 exonContig_71 533707..533758 +
exon_12421_8exon_12421_8Tribonema minus UTEX_B_3156 exonContig_71 535223..536058 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12421UTR5_12421Tribonema minus UTEX_B_3156 five_prime_UTRContig_71 528936..528942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12421CDS_12421Tribonema minus UTEX_B_3156 CDSContig_71 528943..529185 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12421 ID=mRNA_12421|Name=jgi.p|Trimin1|350770|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1540bp|location=Sequence derived from alignment at Contig_71:528936..536058+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGAGAAATGATGTTTATGAGAGGAGGAGCAGCGGGAGTGGCAGCGGCCG
CGATGGCGACTGGCGCAGCTGCCTTCAGCACCGGAGGAACAGCCTTGCTC
CGTCGCGCGCCCATCGCTGCGGCAAGCAGAATGACCATGAGCAGCACATC
GGGTGTGACGGCTAAGGACATCGCCAACGGTGCTAGCATGGAGAAGCTGC
AAAGGCAGTCCCGAATCAAGGATGATATGAAGAACATGCTGCTTGAGCAG
GCACACATCGAGATGTCTGCAAGCCTGGCGTATCTGAGCATGAGCTACTG
GTTTGACAGGGAGGGCATGGAGGGCTTCAGGGACTTCTTCCGCAAGCAGA
GCGACGAGGAGCGGGGTCACTCCATACAGTTCCTGGACTTCCTGTCCAAG
CGCGGTGCAGTATCCGCAATCACGCCCAGCAAGCTGCTGAAAGATCCTGA
GACTGAATTCCAGACAGCCCTGCATGCCATGGAGACCTACCTGGCGCTTG
AGCGTTTTGTGGCAGACTCCATCAACTCCAAGTACTCTAAGGCGATGGAT
GCTAAGGACTGGCCCACTGTCAGCTTCCTGCAGCCATTTGTGGCTTACCA
AATTGAGGAGGAGGATGAGGCTGACTCCATGATGGAGCAGGTCTACAGAC
TGACGAAGAGCAAGGACCTGACGCAAGTGATGGACATCAACCTCAAGTCT
GGCGTACCCCCGGGCCAGTCCGAGGGCGGGGGTGCGGGTAGCGACGGCGC
GGCCGCGGCGGCGGGGGCTGCCGCAGCGACACCTCCAAAACTACCGGCGG
TGCCGGCTAGTGGCGCTGCCAACTCAAAGTCTAGCAAGAAACGCCCGGCG
GCCACGGCAACCGGCGCGCAACGCCGGCGCCGAACGGCAGCTGCTGCGGC
ACCGCCTAGCAGCGCCGGCAGCCGCACTCAGTCTGACAGCCTGAGGCTGC
AGGACAGCAGCCCCCCCCACGGGACGGCCGTGGGATGGGCGGACATGGAC
GTGGACCCGCCGGACGATGCTGCGTCACCGCCCCCCCCGACCACCACCAC
CAGTGGCAGGCCCTCAAAGCCCCAGGCACGAGCATCCCTGGCTTGGGACC
TCTCGACGCCCTCGGTCGTCCACGCACTTGACCAGACCAATGAGGCGGAT
CTACTGCTGCTGCGGTTCACCACGACTGCCAACCCCTTCCGCACTCAGCT
GCAGTGCACCCAGTGGGCACGGCTAGTGGAGCACGCCACACGACTACTGG
CGGACGCCACAGACAGTGCACGTGAGGCGGCACGGGTGCGCCTCCACCAT
GGTGCCGGGGCGTTTGCTCATCAGGTTTCTCAGACTCTAGTGCAGCGCGG
CTACAGGCTGCTGCACCTGCTAGCAGCGATGGCCTTTGGTAGGCAACCGG
AGGGAACCGGTATGCCGCCTGCGGCCCGGCTGGCAGCGTTGCTGTCTGGC
GACTTCGCGGAGCTACTGAGAAAGACGCTGTCAGCAGCAGCGGCGCTGCG
GGCCCCCAAACCAAACAACGCAGCTATGGCGTCGGCATAA
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protein sequence of jgi.p|Trimin1|350770

>Trimin1|350770|estExt_Genemark1.C_Ctg_710056 ID=Trimin1|350770|estExt_Genemark1.C_Ctg_710056|Name=jgi.p|Trimin1|350770|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=511bp
MMFMRGGAAGVAAAAMATGAAAFSTGGTALLRRAPIAAASRMTMSSTSGV
TAKDIANGASMEKLQRQSRIKDDMKNMLLEQAHIEMSASLAYLSMSYWFD
REGMEGFRDFFRKQSDEERGHSIQFLDFLSKRGAVSAITPSKLLKDPETE
FQTALHAMETYLALERFVADSINSKYSKAMDAKDWPTVSFLQPFVAYQIE
EEDEADSMMEQVYRLTKSKDLTQVMDINLKSGVPPGQSEGGGAGSDGAAA
AAGAAAATPPKLPAVPASGAANSKSSKKRPAATATGAQRRRRTAAAAAPP
SSAGSRTQSDSLRLQDSSPPHGTAVGWADMDVDPPDDAASPPPPTTTTSG
RPSKPQARASLAWDLSTPSVVHALDQTNEADLLLLRFTTTANPFRTQLQC
TQWARLVEHATRLLADATDSAREAARVRLHHGAGAFAHQVSQTLVQRGYR
LLHLLAAMAFGRQPEGTGMPPAARLAALLSGDFAELLRKTLSAAAALRAP
KPNNAAMASA*
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mRNA from alignment at Contig_71:528936..536058+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12421 ID=mRNA_12421|Name=jgi.p|Trimin1|350770|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7123bp|location=Sequence derived from alignment at Contig_71:528936..536058+ (Tribonema minus UTEX_B_3156 )
GCGAGAAATGATGTTTATGAGAGGAGGAGCAGCGGGAGTGGCAGCGGCCG
CGATGGCGACTGGCGCAGCTGCCTTCAGCACCGGAGGAACAGCCTTGCTC
CGTCGCGCGCCCATCGCTGCGGCAAGCAGAATGACCATGAGCAGCACATC
GGGTGTGACGGCTAAGGACATCGCCAACGGTGCTAGCATGGAGAAGCTGC
AAAGGCAGTCCCGAATCAAGGATGATATGAAGAACATGCTGCTTGAGCAG
GTGCGCGAGCTGGAGCTCAGATTCAACTGGCGATTAAGTTAGAACATAGT
CGTGACTCATCAAGCACGCTGTTCAGAAGGAGCAGCAGATACAAGCATGC
AGCCACATACCATGACGTGTGCAACTCTACGTGGCGCATTGTGATCCAAT
ATCTAGTTTCTGCTGCGTTGGATCTATTGGGCGGTCACAAGCCAGTTTCG
CTGTCCAGACATTTCGCCATGAAGTTCAAACATTTCAAGCAGCCTTCTGT
GCAAACTGTAGTATACCTCGGATTCTGAGTCACCTTCTGCAGCTGTAACT
GCATGCGTGAATTTGATTTTGTCTTCTTCCAACTCTTAACTCCTAACGCC
AACATTACATACATTCCTGAATGCCATGTACTCACAAATAGAAGTATCCT
CCGATACCACGCTTGCCCTTTGGTGCTATGCGTCTTGATTGTTTGTACTG
ATCGGCTGTTAGGCGTTGAATGCAGGCTCACTTTATCGGCAAAGCACTCA
GTTGATGCATCAGCTTTAAGAGGTTGAATAATTGGCGGAGTATGATGTAC
ACTGTACCCATGTGTGCGTTTCGACAGAAGGCGATTCATGGCGCCTGCTT
GTGGTCCTCTATCATGTTGAACATAAAGTTTATTACAAAAATGTTGCGGC
TGACAAGCCGCTTTGTGATGCTTTTTGATGCATGCAATCAATGCAGGCAC
ACATCGAGATGTCTGCAAGCCTGGCGTATCTGAGCATGAGCTACTGGTTT
GACAGGGAGGGCATGGAGGGCTTCAGGTGAGCATGAGTCAGCAACTATAA
GAACGTTTTCCACAAACATTGGCAGGTCACCGTTTTGCAAAGTTGCTGGC
TTAAGCGTCAGCAGTACAGTTGCTTTTGATTGAGAGTATGAGCTACTCAA
CCTGGATTGCAGTGCTCACAAAATCAGTGTTGCACCCTAATTAAATCAGC
CATGCTCGACAGCTGTCACCGTTGGTTCTTTTGGTTCTTTATGTGGCAGC
AGCGAGCCTTCGTGTTACATGAGCCAACTCTGTAAACATCATTCTGCCAG
CACTCATGCTGCTGGTTTTGTATACATGTTTGTTACCACACTGGCATCCA
ATAGCGGCAGCCGCCTTGCTACTCTAAACTACTCTAAATTGCAGTAAAAT
CATGTACGTATGCGCATGCCTTGTGACGCTAATGGCCACCATAACGCATG
AACTTGAAGAATTTTGTGTCATTTTTCAAGTTTTGCGTATGTGACAGCAC
TCACCCCACATAATACATACTGAAATGCTATGTTCATTGCTTACCATCCA
GCCTCATGACACATGCAGTGTCACATGGCAGCGCGCATATGCCAGCCATT
TGACTGTGTTTACTGCACACACTGCACCTGTGACATGGTCCTGTGTTCTA
GCTACGCATTTGTGCTCACCGAATACTCACATGTACATACACTGCAGGGA
CTTCTTCCGCAAGCGAAGCGATGAGGTGCGGGGCTTTCATACAGTTCCTC
ACATGCCAGCCATATGTCAGCATCCAACTCACACAACGGCCATGAAAATA
ACATGTTATAGAAGTATGTTCCAGCCATGCATCCGTGCTCACTGAACACT
CACACATGTACTGCAGGGACTTCTTCCGCAAGCAGAGCGACGAGGAGCGG
GGTCACTCCATACAGTTCCTGGACTTCCTGTCCAAGCGCGGTGCAGTATC
CGCAATCACGCCCAGCAAGCTGGTGAGTGCCAAATTGTGAATGCATCAGT
GATGCAGCCACGGCATGAGATTTTCAGCACTAATCAGCTAAACTTGCACA
AATACCAAGTGTGCAGCATCCGCAATCACACCCAGCAAGCTGGTGAGTGC
CAAATTGTGAATGCATCTGTGATGCAGCCATGGCATGAGATTTTCAGCAC
TAATCGGCTAAACTTGTACAAATATCAAGTGTTCTCGACAGTTGCCTGGG
CTTCCTGTCAAAGTGCGACATGGCGCAGTATCCGCAATCACGCCTAGCAA
GCTGGTCAGTTCGAAAGCGTCAATGCATTAGCCATGCAGGCACGGCGTGA
GTATGTACTTCCAGCAGCAATCAGCAAAAGTCGCACAAACACTACCAAGA
CCCCCAACTATGCTCGTACTGTTGTTCAGTTTGTGGCCAACGGCAAAGTG
TACTGAGGCTGGACAATTTGAGCATGTGCCTGAATTGTATGTGATGCAAC
TGCATGGCCGGCTCAGATTGCCGAACATTCAAGCAGTTCTGTCGAAGAGT
GGTGTCTCGAGTTTGTATCTCAATTTGAAACAGTAAGAAACACGAGGTCG
AGCAGGACAGCAGTTTGGCTTGCAGTTTCAACATGCACAGCCACTGAGTT
ATGCTACACCTCACAATGCCAGAAACCCATACCTACGTCCTGCTTGCCAG
CGACCTTCGTCTTCTGTGTTCCATTGATCATGCAAGATGTGGCCTACAGA
TTTACAAGGGATCACGCTATTTCTTCACTGCTCTTGACATGATGTTTGCA
TGACTTCTTCTGCCTACTAACATTGCTTTGTATTTGTTCTGCGATGCTGC
CTCCACATCAGCTGAAAGATCCTGAGACTGAATTCCAGACAGCCCTGCAT
GCCATGGAGACCTACCTGGCGCTTGAGCGTTTTGTGGCAGACTCCATCAA
CTCCAAGTACTCTAAGGTATGCATGTCAATCAGCCCTTGTGTATCTGGTG
CTTGAGTGCTTTGTGGCAGACTCCATCAATTCCAAGTACTCTAAGTTATG
CATGTCAATCAGCCCTCCTGTTTTGCGTGTGCGTAAGCTGTGCGTGTGCG
TAAGCTGTTTTGAGCACTGTCAATGGAGTAGTCTAAGGTATGCATGCCAG
TAAGCCCTCCTGCTGTGCGTCTGTATAAGATGGTTTGAGCCCTTTCACGG
TGCTGAACTTTAACGTAGGTTTGTGCTGCCTGATGAGCAGTGCTGGCATC
AAGGGCCGCTAGTGATGGCTGCTGAGTTATCATCTCTGTTGGCGCGGCCA
CTTGAAAGTGATGCACTACCCATTGGGAACATTAACTTGAATGAAAGAAA
TCACATCCTGGGCTACGTGTTGATTGAATGTGGGAGCAGAGGGAGTGATG
TGCCACGGTGTTCGACTTCAAGTGTGGCTGATGTTGATGATGTATGTGTT
GGTGTTGTGGGCTGTTGCCAAGGCTTTTGAATTGGCTGGTGGTGCCATGG
TACTTGAAACCCCAAATGTGCACACCCCACTCATGTTCTCAAAAACAATA
TTGCAGAAGTACTTTCTGTCACCAGCGCGTTCAGCCACTGACACGAATAG
AGCTTGTGCCAGCAATCGTGCTTACAAGATTATGAACACATGATGGTGTT
GAAATTTGCTGAGATGGTGTTTGACCATTTATGCTGATTTTGAACTTGCA
GGCGATGGATGCTAAGGACTGGCCCACTGTCAGCTTCCTGCAGCCATTTG
TGGCTTACCAAATTGAGGGTGAGCAGTGGTGGTCAGAAGTGCCTCAATCA
TCTTACTGTCGTTGCATCAACATGACCTGGTACATGAACTGATCAGCATA
GATGCATCACCATATGCAAGGTGCTGGTGTGTTTCGGGCCTGGCAGAGGT
TTGTTGAGTTGAGCTCATCTGTTTCGCTGTACTGCATTAATATTGGTACA
GGTTTGCTGAGTACTGCATGTATACTGGCACTATGAGCCTGGCGATCAAC
ATGTCACTGCGTTCCTGAAATTCATTGCAGAACACCATCTTGAAGGTTGC
TACAGGGGTGTAAACATCATCCTGCTGTTGAAACTATTCGAACGTTGCGG
CCTTCAATCTTTGAAATGATTATTTCAGATTCATTCATTAGTTGCGCATG
ATCATAGGTCTGGTCTCATCTTCCTGACTATCCTTCCCGTTGCTGTATGT
GTGTGTCTTTTGTGAGCAGAGGAGGATGAGGCTGACTCCATGATGGAGCA
GGTCTACAGACTGGTGAGCCCACAGGTCAATCACCTTTGAACAGCCTTTT
GTGAAAAGGGTCAATGTCTTTAATGAGCTGTTGAAAATATGTGTTTGTGG
TGTCTTACCAGTCGGTATGCCATGTATGCATCAGATTAGACCGTCTTGTC
AGGCAGGCCATATCTCGTGTTGCTGCAGTGATTTGAGGTGCTTTTACAGT
GGCAGCCTGCCAAATTCTGTGCGAGGCATATGCACTTCATGTTAGTGTAT
CGATGCATCGGCTACGCTGCACTTCATGATGTGTTTTGACCAATTCTGTT
CTCCCTCTATGCGCGTGCTCGACAACAGCGGTTCACTGCAAGGGATGCAG
ACGCCTCATTGTGGGCTGAGCAGGAGAGACAGTATGCTTGCCTTGACCAA
TGCATATTGTTGTAATGGCAGGAAGTCTGCAGCTTCTGGCTATGTGCAAC
GTACTCGTACAACAGTTGATGTGAGATGCAGATTCTGCAAACAACACTAG
CAATTTTCACCAATGTCCAGTGCTGGTACCTTTATTGACGCTCACCGCTC
TCAATTTCTTGTCGAGTGCAGACGAAGAGCAAGGACCTGACGCAAGTGAT
GGACATCAACCTCAAGTCTGGCGGTGACTAAGCATCAGTGCTTCACCATC
ACCAGCGTACTCGCCATCGGAAAGGATGAGTTGCTGTGTGCAATAGGCGC
TGTGTGCAATAGGCGCAGCGAAGACACAGCCGGTGCAGTTCCAAGGCAGC
GAGTGACGGCATTACCCAAGTACCATCAGGCTCTGCCAGGTGCTTGCTTT
CAAGCTTTCAGCAATCACGTACAGCTGGAGAGCATGGTGCTACGGCACAG
AAGCCGTATTACATACTGCACAGCACATACATGTACGAATATACATCAGT
GATGCAGGTCAGGTACACAGCATGCTGCGGCCAAAACCGGCTAGAGATAG
GCTCACAACAAAGGTGTTCAGGGGTACGGGGAGGAGGTTTGCGAGCTGGC
AGGCTCAAGTGCGCAGTTTAGCACTTGTGATGCTGTTGCCCATGCATGGT
TGTAATGCACAGGTTCAACTTCTATACGTCTTGTACTTGACTCTATCTGT
GTTGTTTGACATGCACTTGCTGTTGTCAGCGTTCAGCGCTCAAGAATTTC
CTGTCTTTGACTGTTTCCATGTTGATGTTTATGTGCAACATGCAGTTGCT
GTTAAGTATGTTTTTGGGTGTATGTACACACTACAGAACCGGTCACAGAC
AGAGTGAAGGGGTAAAGTGCGTTCAGGCTCTGTGACTTCTGGGTATGAAG
CGTGTGGACCCATTTGAGGTGGTGGTTGATGTAGGACTTTAGTCTGACAT
TACAAAAGTGTGACAAACTGATCATCAGTTTTTATTTCGAAGACTACAAC
TGGACTTCTGATGATATCTTCTATGAAGGATGATCTGTTTATAAATACTC
TTCAGGCTACAGACCCACTTCTGTCCACAATTCTCCAGACTTTATAGATC
ATTGCAAAGCATTGCCGTGGCCGCTGAACCCAAACTCTTTTCTGCTCACT
GGTTACTAAAAGATAGTAGAAAATGGGTGCAGGACAAACTCTGCAGTATT
TTTTATCAATTCTCGCTCAGTGCGCGAAAAACCCCAGATGAATGGTCTCC
AACTTGTAGCTTGCTGTATGGAACTACATGTCGTGTGACAGTCTGAAGGT
GTCTCAACGACAACACTCAAACGCCGCCGCCGCCAAATGGCATCTCGGGA
TCCTCCCCTACATCCTCTGCAGTACTTCCGGCGGCAGCATACGCCAAGGG
CATCCGGCAGCAGGTTGATCACGACCCATCCGGTGACCGTGCCCCTTCAG
GCAGCAGTACCTACAGCACTGGGGCACACCATGCCAAGCATGTGCAGGAG
ATGAGCACCATGTATGGTTGCGCGGCAGAAGACTTCCTACGGGCGGTAAG
GAAGCTGAGTGCATGCACAGGTGCCTGCGGCCTGGTCCATATGTCAGCCA
GCGCGGGGCAGAGGCAATGCGCGCTGACCTCGCCATGCCACACGTGTCGA
CGGAATGGAAGCGCCCCCACGCGCGCACGCCCGGCAGTACCCCCGGGCCA
GTCCGAGGGCGGGGGTGCGGGTAGCGACGGCGCGGCCGCGGCGGCGGGGG
CTGCCGCAGCGACACCTCCAAAACTACCGGCGGTGCCGGCTAGTGGCGCT
GCCAACTCAAAGTCTAGCAAGAAACGCCCGGCGGCCACGGCAACCGGCGC
GCAACGCCGGCGCCGAACGGCAGCTGCTGCGGCACCGCCTAGCAGCGCCG
GCAGCCGCACTCAGTCTGACAGCCTGAGGCTGCAGGACAGCAGCCCCCCC
CACGGGACGGCCGTGGGATGGGCGGACATGGACGTGGACCCGCCGGACGA
TGCTGCGTCACCGCCCCCCCCGACCACCACCACCAGTGGCAGGCCCTCAA
AGCCCCAGGCACGAGCATCCCTGGCTTGGGACCTCTCGACGCCCTCGGTC
GTCCACGCACTTGACCAGACCAATGAGGCGGATCTACTGCTGCTGCGGTT
CACCACGACTGCCAACCCCTTCCGCACTCAGCTGCAGTGCACCCAGTGGG
CACGGCTAGTGGAGCACGCCACACGACTACTGGCGGACGCCACAGACAGT
GCACGTGAGGCGGCACGGGTGCGCCTCCACCATGGTGCCGGGGCGTTTGC
TCATCAGGTTTCTCAGACTCTAGTGCAGCGCGGCTACAGGCTGCTGCACC
TGCTAGCAGCGATGGCCTTTGGTAGGCAACCGGAGGGAACCGGTATGCCG
CCTGCGGCCCGGCTGGCAGCGTTGCTGTCTGGCGACTTCGCGGAGCTACT
GAGAAAGACGCTGTCAGCAGCAGCGGCGCTGCGGGCCCCCAAACCAAACA
ACGCAGCTATGGCGTCGGCATAA
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Coding sequence (CDS) from alignment at Contig_71:528936..536058+

>mRNA_12421 ID=mRNA_12421|Name=jgi.p|Trimin1|350770|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1533bp|location=Sequence derived from alignment at Contig_71:528936..536058+ (Tribonema minus UTEX_B_3156 )
ATGATGTTTATGAGAGGAGGAGCAGCGGGAGTGGCAGCGGCCGCGATGGC
GACTGGCGCAGCTGCCTTCAGCACCGGAGGAACAGCCTTGCTCCGTCGCG
CGCCCATCGCTGCGGCAAGCAGAATGACCATGAGCAGCACATCGGGTGTG
ACGGCTAAGGACATCGCCAACGGTGCTAGCATGGAGAAGCTGCAAAGGCA
GTCCCGAATCAAGGATGATATGAAGAACATGCTGCTTGAGCAGGCACACA
TCGAGATGTCTGCAAGCCTGGCGTATCTGAGCATGAGCTACTGGTTTGAC
AGGGAGGGCATGGAGGGCTTCAGGGACTTCTTCCGCAAGCAGAGCGACGA
GGAGCGGGGTCACTCCATACAGTTCCTGGACTTCCTGTCCAAGCGCGGTG
CAGTATCCGCAATCACGCCCAGCAAGCTGCTGAAAGATCCTGAGACTGAA
TTCCAGACAGCCCTGCATGCCATGGAGACCTACCTGGCGCTTGAGCGTTT
TGTGGCAGACTCCATCAACTCCAAGTACTCTAAGGCGATGGATGCTAAGG
ACTGGCCCACTGTCAGCTTCCTGCAGCCATTTGTGGCTTACCAAATTGAG
GAGGAGGATGAGGCTGACTCCATGATGGAGCAGGTCTACAGACTGACGAA
GAGCAAGGACCTGACGCAAGTGATGGACATCAACCTCAAGTCTGGCGTAC
CCCCGGGCCAGTCCGAGGGCGGGGGTGCGGGTAGCGACGGCGCGGCCGCG
GCGGCGGGGGCTGCCGCAGCGACACCTCCAAAACTACCGGCGGTGCCGGC
TAGTGGCGCTGCCAACTCAAAGTCTAGCAAGAAACGCCCGGCGGCCACGG
CAACCGGCGCGCAACGCCGGCGCCGAACGGCAGCTGCTGCGGCACCGCCT
AGCAGCGCCGGCAGCCGCACTCAGTCTGACAGCCTGAGGCTGCAGGACAG
CAGCCCCCCCCACGGGACGGCCGTGGGATGGGCGGACATGGACGTGGACC
CGCCGGACGATGCTGCGTCACCGCCCCCCCCGACCACCACCACCAGTGGC
AGGCCCTCAAAGCCCCAGGCACGAGCATCCCTGGCTTGGGACCTCTCGAC
GCCCTCGGTCGTCCACGCACTTGACCAGACCAATGAGGCGGATCTACTGC
TGCTGCGGTTCACCACGACTGCCAACCCCTTCCGCACTCAGCTGCAGTGC
ACCCAGTGGGCACGGCTAGTGGAGCACGCCACACGACTACTGGCGGACGC
CACAGACAGTGCACGTGAGGCGGCACGGGTGCGCCTCCACCATGGTGCCG
GGGCGTTTGCTCATCAGGTTTCTCAGACTCTAGTGCAGCGCGGCTACAGG
CTGCTGCACCTGCTAGCAGCGATGGCCTTTGGTAGGCAACCGGAGGGAAC
CGGTATGCCGCCTGCGGCCCGGCTGGCAGCGTTGCTGTCTGGCGACTTCG
CGGAGCTACTGAGAAAGACGCTGTCAGCAGCAGCGGCGCTGCGGGCCCCC
AAACCAAACAACGCAGCTATGGCGTCGGCATAA
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