mRNA_12351 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A836CKL4_9STRA (Putative caspase-1, p20 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL4_9STRA) HSP 1 Score: 512 bits (1318), Expect = 1.860e-183 Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1 Query: 1 MSSRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMPDLKARSGPA 765 MSSRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMPDLKARSGPA Sbjct: 1 MSSRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMPDLKARSGPA 255
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A836CI31_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI31_9STRA) HSP 1 Score: 225 bits (573), Expect = 3.450e-70 Identity = 121/245 (49.39%), Postives = 164/245 (66.94%), Query Frame = 1 Query: 7 SRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAF-LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMP 738 SRAL + NY G+ + L+GC ND L A L +SGAV +++L EA+AA L +LA++ ++++L Y FI+YSGHGTQV D + DE DG DE ICP D +GV++DD+L+ A F T+V F+CDACHSGSMLDL +Y +G S + +V+MISGCRD+QTSADAF + Y GA+T +L+SL++V R DV RLV E + L+ GGF Q PVLS+SF +PR+ AF+P Sbjct: 5 SRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNS-LACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIP 248
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A835Z623_9STRA (Peptidase C14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z623_9STRA) HSP 1 Score: 218 bits (555), Expect = 1.660e-67 Identity = 120/247 (48.58%), Postives = 158/247 (63.97%), Query Frame = 1 Query: 7 SRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAF-LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMPDL 744 S+AL + NY T L+GC ND L+ LV SGAV + VL E + D A+ LA S+ + L Y+FI+YSGHGTQ++D GDE DG DEAICP D T GV++DDLL+ + F T+V F+ DACHSGSMLDL +Y R C +G A+ G+ + ISGCRD+QTSADAF Q+ GA+T L+++ + E DVF LV + + L+ GG+ Q+PVLSSSF IPR+ AF+P L Sbjct: 4 SKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEDICNAISKLAELSKSQDLDYIFISYSGHGTQIKDTTGDETDGKDEAICPADFGTRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGEATLPGK-IAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAHKVDEETHHDVFALVADMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPHL 249
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A835YZ34_9STRA (Caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ34_9STRA) HSP 1 Score: 210 bits (534), Expect = 2.020e-63 Identity = 117/245 (47.76%), Postives = 154/245 (62.86%), Query Frame = 1 Query: 7 SRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAF-LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMP 738 S+AL + NY T L+GC ND L+ LV SGAV + VL E + + A+ LA S+ + L Y FI+YSGHGTQ++D GDE DG DEAICP D GV++DDLL+ + F T+V F+ DACHSGSMLDL +Y R C +G A+ G+ + ISGCRD+QTSADAF Q+ GA+T L+++ + E DVF LV + L+ GG+ Q+PVLSSSF IPR+ AF+P Sbjct: 4 SKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGK-IAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIP 247
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A835ZCN1_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN1_9STRA) HSP 1 Score: 199 bits (507), Expect = 2.940e-60 Identity = 113/245 (46.12%), Postives = 151/245 (61.63%), Query Frame = 1 Query: 7 SRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTQ-YGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMP 738 SRAL + NY T L+GC ND + L L SGAV + VL E + + A+ LA S + L YVFI+YSGHGTQV+D GDEADG DEAICP D GV++DDLL+ + F T+V F+ DACHSGS+LD+ Y + C +G A G+ + ISGCRD QTSADA+ ++ Y G +T ++S + P R DVF+LV E + L+ G+ Q+PVL++SF IPR +F+P Sbjct: 4 SRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGK-IAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIP 247
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A6C0BGG3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BGG3_9ZZZZ) HSP 1 Score: 172 bits (435), Expect = 2.410e-49 Identity = 98/256 (38.28%), Postives = 150/256 (58.59%), Query Frame = 1 Query: 1 MSSRALLLCNNYVGT-DAELRGCHNDGDCLKAALVSSGAVPEGRVRVLRE------ASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDG-RRCADAGAASDVGRRVLMISGCRDSQTSADAF--LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMP 738 M RALL NY + DA+L GC ND + L ++ +P V+V + SA + L +LA +S E+L +V++ YSGHG+ + D GDE DG DE + P D +G++SDD + +F F T V+ V D CHSG++ D+++S++G + CA + R++ +SGC D+QTSADA LG +Y GALT CLL L++ P+ + DVF+++ +L+E GF Q+P L S++ + R F+P Sbjct: 1 MRGRALLFGLNYATSPDAKLNGCINDVINISKYLNTNLGIP---VKVCTDDGDTYSTSAMGIIRNLYELALQSYSEKLDFVWVHYSGHGSYIVDKSGDEKDGKDECLVPSDYAKSGMISDDFINTLFGYFNPNTRVICVFDCCHSGTIGDVKYSWEGPKTCAVENILCSIPARIITLSGCFDNQTSADAHNVLGDNKYVGALTSCLLMVLKEQPQVKNDVFQMIANLRTKLRERGFSQLPKLCSTYNLARDKVFIP 253
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A835XKF2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XKF2_9CHLO) HSP 1 Score: 160 bits (406), Expect = 1.280e-44 Identity = 104/256 (40.62%), Postives = 144/256 (56.25%), Query Frame = 1 Query: 7 SRALLLCNNYVGTDAE-LRGCHNDGDCLKAALVSS-GAVPEGRVRVLREASAADAVAA------LEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFL--GGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSF--LIPRRHAFMP 738 +RALL NY + L+GC ND +KA L++ GA V A+ A +A L +LA + +E L +V+I YSGHGT+V D DE DG DE + P D TAGV+ DD L ++F F +T V+ V D+CHSG+++DL++S++GR C + S V ++ +SGC DSQTSADA+ G QY GA+T +L L+ A D F LV L+E F Q P L SSF ++P A +P Sbjct: 29 ARALLFGLNYAHMPSSALQGCINDVQNMKAYLMNRLGAELVCDVATDDTAAGRTATSAMGMTRKLSELAVLTYKEDLEFVWIHYSGHGTRVVDRSKDELDGYDECLVPSDYTTAGVIPDDYLAKLFEQFNPKTRVIAVFDSCHSGTVVDLKYSWEGRACTMENSNSRVRAPIMALSGCLDSQTSADAYNVDGQRQYTGAMTSVMLHVLQTTGAAADDAFLLVDAMRAHLREQNFTQWPKLCSSFSLVLPSSRAMLP 284
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A835SCZ1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SCZ1_CHLIN) HSP 1 Score: 150 bits (379), Expect = 6.210e-38 Identity = 96/241 (39.83%), Postives = 127/241 (52.70%), Query Frame = 1 Query: 31 NYVGTDAELRGCHND----GDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADA-GAASDVGRRVLMISGCRDSQTSADAF---LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHA 729 NY L+GC ND GD L+ AV V + S A + L +LA RS E L + +S HGTQ RD +G+E DG+DE + P DV TAG++ DD ++ + F T V+ V D CHSG+M DLRFS++G AAS V V ISGC D QTSAD +G Q+ GALT C++++L P D F+LV L+ G QVP+L SS + + A Sbjct: 2 NYSTESFPLKGCINDVRMMGDLLRGTFGIPTAVFTDDVS-RADTSRAGILRRLNELAARSNVESLDLAIVHFSCHGTQARDTNGEELDGMDECLVPNDVVTAGLIRDDDIQAILTRFNRNTRVLLVLDCCHSGTMCDLRFSWEGEAFVRTENAASLVLAPVTSISGCMDPQTSADCLAVAMGKLQWAGALTSCMVQALTKDPTLVTDAFKLVSAVRTALRLRGLPQVPMLCSSHNLAKAKA 241
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A7M3UPF5_POV01 (Uncharacterized protein n=1 Tax=Pyramimonas orientalis virus TaxID=455367 RepID=A0A7M3UPF5_POV01) HSP 1 Score: 141 bits (355), Expect = 2.140e-37 Identity = 100/259 (38.61%), Postives = 133/259 (51.35%), Query Frame = 1 Query: 1 MSSRALLLCNNYVGT-DAELRGCHNDGDCLKAAL----------VSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADG--DEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYD--GRRCADAGAASDVGRRVLMISGCRDSQTSADAF--LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRH 726 M S+A+L NYV T A LRGC ND + L V S E + R V ++ LA S RL V+I +SGHGT VRD+ G DE+DG DE I P D GV+ DD ++R+ F T V V D CHSG++ DL++ Y R S + +ISGC DSQTSADAF G QY GA+T CLL L++ E+ +F ++ L++ F Q P+LSSSF +P+ + Sbjct: 1 MKSKAILFGINYVNTPQARLRGCVNDVKNVAKYLTKEEKYDVVKVYSDEADETKTR------GQSIVNSMYKLAIDSHRYRLERVWIHFSGHGTHVRDSYGYRDESDGNDECIVPSDYNRCGVIRDDTIKRILRMFNPTTKVTCVFDCCHSGTIGDLKYVYKKIDRTPEIENNGSKCMANICLISGCTDSQTSADAFNVQGKRQYTGAMTSCLLEVLKN--ESDKSIFNVLESLRDLLRQKRFPQYPLLSSSFEVPQNY 251
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A6C0CTM3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CTM3_9ZZZZ) HSP 1 Score: 139 bits (350), Expect = 1.040e-36 Identity = 88/246 (35.77%), Postives = 128/246 (52.03%), Query Frame = 1 Query: 1 MSSRALLLCNNYVGT-DAELRGCHNDGDCLKAALVSSGAVPEGRVRV----LREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSY-DGRRCADAGAASDVGRRVLMISGCRDSQTSADAF--LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLI 714 M S+A+L NY T A LRGC ND + L + + + + + ++ LA S L V+I YSGHG + D DGDE+DG DE I P D GV++DDL++RV F RT V + D CHSG++ DL++ Y D + A S ++++SGC D QTSADA+ G ++ GA+T CLL ++ E + F + + + L+ F QVP L+SSF + Sbjct: 1 MKSKAILFGINYNNTPQARLRGCVNDVRNMAKFLKEKAKYDVVKAYTDDDDFNKVTGSYIINSIYKLAIDSHRHNLDRVWIHYSGHGCAINDRDGDESDGKDECIVPADYNYRGVITDDLIKRVLRYFNKRTQVTCIFDCCHSGTIGDLKYEYRDPHVYREENAKSKCQSNIMLLSGCMDHQTSADAYNVRGRREFSGAMTSCLLVAM----ENSSNAFEVFDDLKKMLRAKRFTQVPRLTSSFKV 242 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12351 ID=mRNA_12351|Name=jgi.p|Trimin1|176187|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_134:404436..405203- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCGTCCCGCGCCCTGCTGCTCTGCAACAACTACGTCGGCACGGATGCback to top protein sequence of jgi.p|Trimin1|176187 >Trimin1|176187|e_gw1.134.79.1 ID=Trimin1|176187|e_gw1.134.79.1|Name=jgi.p|Trimin1|176187|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=256bp MSSRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREAback to top mRNA from alignment at Contig_134:404436..405203- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12351 ID=mRNA_12351|Name=jgi.p|Trimin1|176187|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_134:404436..405203- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_134:404436..405203- >mRNA_12351 ID=mRNA_12351|Name=jgi.p|Trimin1|176187|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=768bp|location=Sequence derived from alignment at Contig_134:404436..405203- (Tribonema minus UTEX_B_3156 )back to top |