mRNA_12351 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176187
Unique NamemRNA_12351
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A836CKL4_9STRA (Putative caspase-1, p20 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL4_9STRA)

HSP 1 Score: 512 bits (1318), Expect = 1.860e-183
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1
Query:    1 MSSRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMPDLKARSGPA 765
            MSSRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMPDLKARSGPA
Sbjct:    1 MSSRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMPDLKARSGPA 255          
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A836CI31_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI31_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.450e-70
Identity = 121/245 (49.39%), Postives = 164/245 (66.94%), Query Frame = 1
Query:    7 SRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAF-LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMP 738
            SRAL +  NY G+ + L+GC ND   L A L +SGAV    +++L EA+AA     L +LA++ ++++L Y FI+YSGHGTQV D + DE DG DE ICP D   +GV++DD+L+   A F   T+V F+CDACHSGSMLDL  +Y       +G  S +  +V+MISGCRD+QTSADAF    + Y GA+T  +L+SL++V   R DV RLV E  + L+ GGF Q PVLS+SF +PR+ AF+P
Sbjct:    5 SRALCIGINYTGSSSALQGCINDAKNLSALLNASGAVASANIQLLCEATAAQIHEGLTNLAQKCKDDKLTYAFISYSGHGTQVADLNKDETDGKDECICPSDFTKSGVITDDMLKDRIAQFPSWTTVCFLCDACHSGSMLDLNHTYVNSIDTVSGTNS-LACKVVMISGCRDNQTSADAFDQSSSAYTGAMTSAMLKSLKNVFACRTDVIRLVAEMRKVLRAGGFSQYPVLSTSFTLPRQFAFIP 248          
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A835Z623_9STRA (Peptidase C14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z623_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.660e-67
Identity = 120/247 (48.58%), Postives = 158/247 (63.97%), Query Frame = 1
Query:    7 SRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAF-LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMPDL 744
            S+AL +  NY  T   L+GC ND   L+  LV SGAV    + VL E +  D   A+  LA  S+ + L Y+FI+YSGHGTQ++D  GDE DG DEAICP D  T GV++DDLL+ +   F   T+V F+ DACHSGSMLDL  +Y  R C  +G A+  G+ +  ISGCRD+QTSADAF     Q+ GA+T  L+++ +   E   DVF LV +  + L+ GG+ Q+PVLSSSF IPR+ AF+P L
Sbjct:    4 SKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEDICNAISKLAELSKSQDLDYIFISYSGHGTQIKDTTGDETDGKDEAICPADFGTRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGEATLPGK-IAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAHKVDEETHHDVFALVADMKKLLRAGGYSQIPVLSSSFDIPRQFAFIPHL 249          
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A835YZ34_9STRA (Caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ34_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.020e-63
Identity = 117/245 (47.76%), Postives = 154/245 (62.86%), Query Frame = 1
Query:    7 SRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAF-LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMP 738
            S+AL +  NY  T   L+GC ND   L+  LV SGAV    + VL E +  +   A+  LA  S+ + L Y FI+YSGHGTQ++D  GDE DG DEAICP D    GV++DDLL+ +   F   T+V F+ DACHSGSMLDL  +Y  R C  +G A+  G+ +  ISGCRD+QTSADAF     Q+ GA+T  L+++ +   E   DVF LV    + L+ GG+ Q+PVLSSSF IPR+ AF+P
Sbjct:    4 SKALCIGINYGKTANALQGCVNDAKNLQKLLVDSGAVAAEDITVLCEPTGEEICNAISKLAELSKSQDLDYTFISYSGHGTQIKDTTGDETDGKDEAICPADFGMRGVITDDLLKSLLQQFNNDTTVCFLADACHSGSMLDLNRTYTSRLCTLSGDATLPGK-IAYISGCRDTQTSADAFDQDSRQFTGAMTSALIKAQKLDEETHHDVFALVAGMKKLLRAGGYSQIPVLSSSFDIPRQFAFIP 247          
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A835ZCN1_9STRA (Peptidase C14, caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCN1_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.940e-60
Identity = 113/245 (46.12%), Postives = 151/245 (61.63%), Query Frame = 1
Query:    7 SRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTQ-YGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMP 738
            SRAL +  NY  T   L+GC ND + L   L  SGAV    + VL E +  +   A+  LA  S  + L YVFI+YSGHGTQV+D  GDEADG DEAICP D    GV++DDLL+ +   F   T+V F+ DACHSGS+LD+   Y  + C  +G A   G+ +  ISGCRD QTSADA+   ++ Y G +T   ++S +  P  R DVF+LV E  + L+  G+ Q+PVL++SF IPR  +F+P
Sbjct:    4 SRALCIGINYGKTANALQGCVNDANNLSKLLDGSGAVAMEDITVLCEPTGEELCNAISHLADLSVSQNLNYVFISYSGHGTQVKDVTGDEADGRDEAICPSDFNIKGVITDDLLKSLLQRFNIATTVCFLADACHSGSLLDMNRQYTSKICTLSGDAELPGK-IAYISGCRDPQTSADAYDQDSRTYQGVMTCARIKSQKINPATRTDVFKLVAEMRKLLRAQGYAQIPVLTASFDIPRAFSFIP 247          
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A6C0BGG3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BGG3_9ZZZZ)

HSP 1 Score: 172 bits (435), Expect = 2.410e-49
Identity = 98/256 (38.28%), Postives = 150/256 (58.59%), Query Frame = 1
Query:    1 MSSRALLLCNNYVGT-DAELRGCHNDGDCLKAALVSSGAVPEGRVRVLRE------ASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDG-RRCADAGAASDVGRRVLMISGCRDSQTSADAF--LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMP 738
            M  RALL   NY  + DA+L GC ND   +   L ++  +P   V+V  +       SA   +  L +LA +S  E+L +V++ YSGHG+ + D  GDE DG DE + P D   +G++SDD +  +F  F   T V+ V D CHSG++ D+++S++G + CA       +  R++ +SGC D+QTSADA   LG  +Y GALT CLL  L++ P+ + DVF+++     +L+E GF Q+P L S++ + R   F+P
Sbjct:    1 MRGRALLFGLNYATSPDAKLNGCINDVINISKYLNTNLGIP---VKVCTDDGDTYSTSAMGIIRNLYELALQSYSEKLDFVWVHYSGHGSYIVDKSGDEKDGKDECLVPSDYAKSGMISDDFINTLFGYFNPNTRVICVFDCCHSGTIGDVKYSWEGPKTCAVENILCSIPARIITLSGCFDNQTSADAHNVLGDNKYVGALTSCLLMVLKEQPQVKNDVFQMIANLRTKLRERGFSQLPKLCSTYNLARDKVFIP 253          
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A835XKF2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XKF2_9CHLO)

HSP 1 Score: 160 bits (406), Expect = 1.280e-44
Identity = 104/256 (40.62%), Postives = 144/256 (56.25%), Query Frame = 1
Query:    7 SRALLLCNNYVGTDAE-LRGCHNDGDCLKAALVSS-GAVPEGRVRVLREASAADAVAA------LEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADAGAASDVGRRVLMISGCRDSQTSADAFL--GGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSF--LIPRRHAFMP 738
            +RALL   NY    +  L+GC ND   +KA L++  GA     V     A+   A +A      L +LA  + +E L +V+I YSGHGT+V D   DE DG DE + P D  TAGV+ DD L ++F  F  +T V+ V D+CHSG+++DL++S++GR C    + S V   ++ +SGC DSQTSADA+   G  QY GA+T  +L  L+    A  D F LV      L+E  F Q P L SSF  ++P   A +P
Sbjct:   29 ARALLFGLNYAHMPSSALQGCINDVQNMKAYLMNRLGAELVCDVATDDTAAGRTATSAMGMTRKLSELAVLTYKEDLEFVWIHYSGHGTRVVDRSKDELDGYDECLVPSDYTTAGVIPDDYLAKLFEQFNPKTRVIAVFDSCHSGTVVDLKYSWEGRACTMENSNSRVRAPIMALSGCLDSQTSADAYNVDGQRQYTGAMTSVMLHVLQTTGAAADDAFLLVDAMRAHLREQNFTQWPKLCSSFSLVLPSSRAMLP 284          
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A835SCZ1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SCZ1_CHLIN)

HSP 1 Score: 150 bits (379), Expect = 6.210e-38
Identity = 96/241 (39.83%), Postives = 127/241 (52.70%), Query Frame = 1
Query:   31 NYVGTDAELRGCHND----GDCLKAALVSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDGRRCADA-GAASDVGRRVLMISGCRDSQTSADAF---LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHA 729
            NY      L+GC ND    GD L+       AV    V    + S A  +  L +LA RS  E L    + +S HGTQ RD +G+E DG+DE + P DV TAG++ DD ++ +   F   T V+ V D CHSG+M DLRFS++G        AAS V   V  ISGC D QTSAD     +G  Q+ GALT C++++L   P    D F+LV      L+  G  QVP+L SS  + +  A
Sbjct:    2 NYSTESFPLKGCINDVRMMGDLLRGTFGIPTAVFTDDVS-RADTSRAGILRRLNELAARSNVESLDLAIVHFSCHGTQARDTNGEELDGMDECLVPNDVVTAGLIRDDDIQAILTRFNRNTRVLLVLDCCHSGTMCDLRFSWEGEAFVRTENAASLVLAPVTSISGCMDPQTSADCLAVAMGKLQWAGALTSCMVQALTKDPTLVTDAFKLVSAVRTALRLRGLPQVPMLCSSHNLAKAKA 241          
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A7M3UPF5_POV01 (Uncharacterized protein n=1 Tax=Pyramimonas orientalis virus TaxID=455367 RepID=A0A7M3UPF5_POV01)

HSP 1 Score: 141 bits (355), Expect = 2.140e-37
Identity = 100/259 (38.61%), Postives = 133/259 (51.35%), Query Frame = 1
Query:    1 MSSRALLLCNNYVGT-DAELRGCHNDGDCLKAAL----------VSSGAVPEGRVRVLREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADG--DEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYD--GRRCADAGAASDVGRRVLMISGCRDSQTSADAF--LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRH 726
            M S+A+L   NYV T  A LRGC ND   +   L          V S    E + R          V ++  LA  S   RL  V+I +SGHGT VRD+ G  DE+DG DE I P D    GV+ DD ++R+   F   T V  V D CHSG++ DL++ Y    R        S     + +ISGC DSQTSADAF   G  QY GA+T CLL  L++  E+   +F ++      L++  F Q P+LSSSF +P+ +
Sbjct:    1 MKSKAILFGINYVNTPQARLRGCVNDVKNVAKYLTKEEKYDVVKVYSDEADETKTR------GQSIVNSMYKLAIDSHRYRLERVWIHFSGHGTHVRDSYGYRDESDGNDECIVPSDYNRCGVIRDDTIKRILRMFNPTTKVTCVFDCCHSGTIGDLKYVYKKIDRTPEIENNGSKCMANICLISGCTDSQTSADAFNVQGKRQYTGAMTSCLLEVLKN--ESDKSIFNVLESLRDLLRQKRFPQYPLLSSSFEVPQNY 251          
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Match: A0A6C0CTM3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CTM3_9ZZZZ)

HSP 1 Score: 139 bits (350), Expect = 1.040e-36
Identity = 88/246 (35.77%), Postives = 128/246 (52.03%), Query Frame = 1
Query:    1 MSSRALLLCNNYVGT-DAELRGCHNDGDCLKAALVSSGAVPEGRVRV----LREASAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAICPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSY-DGRRCADAGAASDVGRRVLMISGCRDSQTSADAF--LGGTQYGGALTDCLLRSLRDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLI 714
            M S+A+L   NY  T  A LRGC ND   +   L         +         + + +  + ++  LA  S    L  V+I YSGHG  + D DGDE+DG DE I P D    GV++DDL++RV   F  RT V  + D CHSG++ DL++ Y D     +  A S     ++++SGC D QTSADA+   G  ++ GA+T CLL ++    E   + F +  +  + L+   F QVP L+SSF +
Sbjct:    1 MKSKAILFGINYNNTPQARLRGCVNDVRNMAKFLKEKAKYDVVKAYTDDDDFNKVTGSYIINSIYKLAIDSHRHNLDRVWIHYSGHGCAINDRDGDESDGKDECIVPADYNYRGVITDDLIKRVLRYFNKRTQVTCIFDCCHSGTIGDLKYEYRDPHVYREENAKSKCQSNIMLLSGCMDHQTSADAYNVRGRREFSGAMTSCLLVAM----ENSSNAFEVFDDLKKMLRAKRFTQVPRLTSSFKV 242          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176187 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKL4_9STRA1.860e-183100.00Putative caspase-1, p20 n=2 Tax=Tribonema minus Ta... [more]
A0A836CI31_9STRA3.450e-7049.39Peptidase C14, caspase domain-containing protein n... [more]
A0A835Z623_9STRA1.660e-6748.58Peptidase C14 n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A835YZ34_9STRA2.020e-6347.76Caspase domain-containing protein n=1 Tax=Tribonem... [more]
A0A835ZCN1_9STRA2.940e-6046.12Peptidase C14, caspase domain-containing protein n... [more]
A0A6C0BGG3_9ZZZZ2.410e-4938.28Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A835XKF2_9CHLO1.280e-4440.63Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A835SCZ1_CHLIN6.210e-3839.83Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A7M3UPF5_POV012.140e-3738.61Uncharacterized protein n=1 Tax=Pyramimonas orient... [more]
A0A6C0CTM3_9ZZZZ1.040e-3635.77Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_134contigContig_134:404436..405203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176187|e_gw1.134.79.1
Preferred nameatmc2
DescriptionCaspase domain
COG categoryS
Max annot lvl2|Bacteria
EggNOG OGsCOG4249@1|root,COG4249@2|Bacteria,2NQXX@2323|unclassified Bacteria
Evalue4.49e-30
Seed ortholog671143.DAMO_2073
Hectar predicted targeting categoryother localisation
TranscriptId176509
TrackFilteredModels1
ProteinId176187
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176187gene_12351Tribonema minus UTEX_B_3156 geneContig_134 404436..405203 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12351_1exon_12351_1Tribonema minus UTEX_B_3156 exonContig_134 404436..405203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12351CDS_12351Tribonema minus UTEX_B_3156 CDSContig_134 404436..405203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176187Trimin1|176187|e_gw1.134.79.1Tribonema minus UTEX_B_3156 polypeptideContig_134 404436..405203 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12351 ID=mRNA_12351|Name=jgi.p|Trimin1|176187|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_134:404436..405203- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCCGCGCCCTGCTGCTCTGCAACAACTACGTCGGCACGGATGC
GGAGCTCCGGGGCTGCCATAACGACGGAGATTGCCTCAAGGCGGCGCTGG
TCTCGTCGGGGGCGGTCCCTGAGGGTCGCGTCCGCGTGCTGCGCGAGGCC
TCCGCCGCCGACGCCGTCGCCGCCCTCGAGGACCTCGCACGCCGGTCCCG
CGAGGAGAGGCTCGCGTACGTCTTCATCGCCTACTCCGGCCACGGCACCC
AGGTGCGCGACGCGGACGGGGACGAGGCCGACGGCCTGGACGAGGCCATC
TGCCCGGGGGACGTCGAGACCGCGGGCGTCGTGTCCGACGACCTCCTCAG
GCGCGTCTTCGCGGGCTTCTACTACCGCACCTCCGTCGTCTTCGTCTGCG
ACGCCTGCCACAGCGGCTCGATGCTGGACCTGAGGTTCTCGTACGACGGC
AGGAGGTGCGCGGACGCGGGGGCCGCGTCGGACGTCGGCCGCCGCGTCCT
GATGATCTCCGGCTGCAGGGACTCCCAGACCAGCGCGGACGCGTTCCTGG
GCGGCACGCAGTACGGGGGGGCCCTCACGGACTGCCTGCTGAGGTCGCTG
AGGGACGTCCCAGAGGCGCGGGGGGACGTCTTCCGCCTCGTCCACGAGAC
CTGTAGGCGGCTGAAGGAGGGCGGGTTCGACCAGGTCCCCGTGCTGAGCT
CGTCGTTCCTGATACCGCGCCGCCACGCCTTCATGCCCGACCTGAAGGCG
CGGTCCGGTCCCGCCTGA
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protein sequence of jgi.p|Trimin1|176187

>Trimin1|176187|e_gw1.134.79.1 ID=Trimin1|176187|e_gw1.134.79.1|Name=jgi.p|Trimin1|176187|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=256bp
MSSRALLLCNNYVGTDAELRGCHNDGDCLKAALVSSGAVPEGRVRVLREA
SAADAVAALEDLARRSREERLAYVFIAYSGHGTQVRDADGDEADGLDEAI
CPGDVETAGVVSDDLLRRVFAGFYYRTSVVFVCDACHSGSMLDLRFSYDG
RRCADAGAASDVGRRVLMISGCRDSQTSADAFLGGTQYGGALTDCLLRSL
RDVPEARGDVFRLVHETCRRLKEGGFDQVPVLSSSFLIPRRHAFMPDLKA
RSGPA*
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mRNA from alignment at Contig_134:404436..405203-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12351 ID=mRNA_12351|Name=jgi.p|Trimin1|176187|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_134:404436..405203- (Tribonema minus UTEX_B_3156 )
ATGTCGTCCCGCGCCCTGCTGCTCTGCAACAACTACGTCGGCACGGATGC GGAGCTCCGGGGCTGCCATAACGACGGAGATTGCCTCAAGGCGGCGCTGG TCTCGTCGGGGGCGGTCCCTGAGGGTCGCGTCCGCGTGCTGCGCGAGGCC TCCGCCGCCGACGCCGTCGCCGCCCTCGAGGACCTCGCACGCCGGTCCCG CGAGGAGAGGCTCGCGTACGTCTTCATCGCCTACTCCGGCCACGGCACCC AGGTGCGCGACGCGGACGGGGACGAGGCCGACGGCCTGGACGAGGCCATC TGCCCGGGGGACGTCGAGACCGCGGGCGTCGTGTCCGACGACCTCCTCAG GCGCGTCTTCGCGGGCTTCTACTACCGCACCTCCGTCGTCTTCGTCTGCG ACGCCTGCCACAGCGGCTCGATGCTGGACCTGAGGTTCTCGTACGACGGC AGGAGGTGCGCGGACGCGGGGGCCGCGTCGGACGTCGGCCGCCGCGTCCT GATGATCTCCGGCTGCAGGGACTCCCAGACCAGCGCGGACGCGTTCCTGG GCGGCACGCAGTACGGGGGGGCCCTCACGGACTGCCTGCTGAGGTCGCTG AGGGACGTCCCAGAGGCGCGGGGGGACGTCTTCCGCCTCGTCCACGAGAC CTGTAGGCGGCTGAAGGAGGGCGGGTTCGACCAGGTCCCCGTGCTGAGCT CGTCGTTCCTGATACCGCGCCGCCACGCCTTCATGCCCGACCTGAAGGCG CGGTCCGGTCCCGCCTGA
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Coding sequence (CDS) from alignment at Contig_134:404436..405203-

>mRNA_12351 ID=mRNA_12351|Name=jgi.p|Trimin1|176187|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=768bp|location=Sequence derived from alignment at Contig_134:404436..405203- (Tribonema minus UTEX_B_3156 )
ATGTCGTCCCGCGCCCTGCTGCTCTGCAACAACTACGTCGGCACGGATGC
GGAGCTCCGGGGCTGCCATAACGACGGAGATTGCCTCAAGGCGGCGCTGG
TCTCGTCGGGGGCGGTCCCTGAGGGTCGCGTCCGCGTGCTGCGCGAGGCC
TCCGCCGCCGACGCCGTCGCCGCCCTCGAGGACCTCGCACGCCGGTCCCG
CGAGGAGAGGCTCGCGTACGTCTTCATCGCCTACTCCGGCCACGGCACCC
AGGTGCGCGACGCGGACGGGGACGAGGCCGACGGCCTGGACGAGGCCATC
TGCCCGGGGGACGTCGAGACCGCGGGCGTCGTGTCCGACGACCTCCTCAG
GCGCGTCTTCGCGGGCTTCTACTACCGCACCTCCGTCGTCTTCGTCTGCG
ACGCCTGCCACAGCGGCTCGATGCTGGACCTGAGGTTCTCGTACGACGGC
AGGAGGTGCGCGGACGCGGGGGCCGCGTCGGACGTCGGCCGCCGCGTCCT
GATGATCTCCGGCTGCAGGGACTCCCAGACCAGCGCGGACGCGTTCCTGG
GCGGCACGCAGTACGGGGGGGCCCTCACGGACTGCCTGCTGAGGTCGCTG
AGGGACGTCCCAGAGGCGCGGGGGGACGTCTTCCGCCTCGTCCACGAGAC
CTGTAGGCGGCTGAAGGAGGGCGGGTTCGACCAGGTCCCCGTGCTGAGCT
CGTCGTTCCTGATACCGCGCCGCCACGCCTTCATGCCCGACCTGAAGGCG
CGGTCCGGTCCCGCCTGA
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