mRNA_12241 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|339873
Unique NamemRNA_12241
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A835YGA3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGA3_9STRA)

HSP 1 Score: 701 bits (1810), Expect = 3.500e-247
Identity = 500/500 (100.00%), Postives = 500/500 (100.00%), Query Frame = 1 
Query:    1 MEPGDEESEVQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKRKTETVDDGVPEYVPASRSRMGSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAVSAELYTSPAQLQVMAGGAVQQAAPEGYMPMAYPAMGLMEYSMLGIPQMGAFGGLLLPPGAMTSLAMQYXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPAQLQHMMVPQYAPYLYGQAFGQTPYGATAAVDAQMQMXXXMMGYAQAYAPPAMGGGYAQGAVAEGXXXXXXXXXMTAEQQQXXXXXXAMQAVQQQQAIMQAQVAHNGGGSGDSSDATSRSGSDGAAQRPQSQLTAAMSVADMXXXXXXXXXXXXXXXLPPQAGLREAGSGGVQALSLFGQEGRGRAAGGARASAAAAT 1500
            MEPGDEESEVQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKRKTETVDDGVPEYVPASRSRMGSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAVSAELYTSPAQLQVMAGGAVQQAAPEGYMPMAYPAMGLMEYSMLGIPQMGAFGGLLLPPGAMTSLAMQYXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPAQLQHMMVPQYAPYLYGQAFGQTPYGATAAVDAQMQMXXXMMGYAQAYAPPAMGGGYAQGAVAEGXXXXXXXXXMTAEQQQXXXXXXAMQAVQQQQAIMQAQVAHNGGGSGDSSDATSRSGSDGAAQRPQSQLTAAMSVADMXXXXXXXXXXXXXXXLPPQAGLREAGSGGVQALSLFGQEGRGRAAGGARASAAAAT
Sbjct:    1 MEPGDEESEVQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKRKTETVDDGVPEYVPASRSRMGSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAVSAELYTSPAQLQVMAGGAVQQAAPEGYMPMAYPAMGLMEYSMLGIPQMGAFGGLLLPPGAMTSLAMQYXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPAQLQHMMVPQYAPYLYGQAFGQTPYGATAAVDAQMQMXXXMMGYAQAYAPPAMGGGYAQGAVAEGXXXXXXXXXMTAEQQQXXXXXXAMQAVQQQQAIMQAQVAHNGGGSGDSSDATSRSGSDGAAQRPQSQLTAAMSVADMXXXXXXXXXXXXXXXLPPQAGLREAGSGGVQALSLFGQEGRGRAAGGARASAAAAT 500
[Close]
BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.010e-31
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:   46 RYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQA 375
            +YPR G+RGAPQ F  KL+E+LS E  DI+ WT SG +F I +ME F +  L+KYF+H   +SFQRQLNLYGFRK  KG D G + H  F RD+PELL +VRR  Q++ A
Sbjct:    2 KYPRTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRRIPQSAGA 111
[Close]
BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2WKC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.480e-30
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 1 
Query:   28 VQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQ 372
            V  D ++YPR GKRGAPQAFA KL+E+L  ES ++++W+ +G AF I DM+ F S+ L+KYF+H   +SFQRQLNLYGFRK+ KG+D GG+ H  F R R +LL  VRRT Q  Q
Sbjct:   66 VPGDQRKYPRTGKRGAPQAFAHKLYEILEAESTEVIAWSGTGRAFFIKDMDIFVSQVLLKYFRHVKYSSFQRQLNLYGFRKATKGQDVGGYYHHYFMRSRRDLLPFVRRTPQQPQ 180
[Close]
BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2WU52_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU52_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.160e-30
Identity = 66/114 (57.89%), Postives = 81/114 (71.05%), Query Frame = 1 
Query:   28 VQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQAS 369
            V    +RYPR GKRGAPQ FA KL+E+L NE PD +SWT SG +F I +M+ F +  L+KYF+H   +SFQRQLNLYGFRK  KG D+G + H SF R +PELL  VRR  Q+S
Sbjct:  150 VSGQTQRYPRTGKRGAPQVFARKLYEILDNEPPDAISWTTSGTSFVIKEMDAFVTCVLMKYFRHQKYSSFQRQLNLYGFRKISKGSDAGAYAHESFIRGQPELLHFVRRMPQSS 263
[Close]
BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA)

HSP 1 Score: 134 bits (336), Expect = 8.150e-30
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:   34 NDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKRKTE 393
            +D  RYPR GKRGAPQ F  KL+E+L NES D +SWT SG +F I DME F +  L+KYF+H   +SFQRQLNLYGFRK  KG ++G + H  F RD+ + L  VRRT Q +  +K KTE
Sbjct:   60 SDAMRYPRTGKRGAPQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYGFRKISKGTETGAYCHEFFARDQTDKLRLVRRTPQVTGRSKAKTE 179
[Close]
BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.290e-29
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:   46 RYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQA 366
            +YPR G+RGAPQ F  KL+E+L+NE  D++ WT SG +F I +ME F +E L+ YF+H   +SFQRQLNLYGFRK  KG D+G + H  F RD+PE L  VRR  Q+
Sbjct:   94 KYPRTGRRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESLTFVRRMPQS 200
[Close]
BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7R9YBQ9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ9_9STRA)

HSP 1 Score: 131 bits (330), Expect = 3.680e-29
Identity = 67/119 (56.30%), Postives = 76/119 (63.87%), Query Frame = 1 
Query:   28 VQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKR 384
            V  D KRYPR GKRGAPQ F  KLFELL  E   ++ W   G  F I DM+ FT E L +YFKH+   SFQRQLNLYGFRK  KGE  G + H  FQRD PE L +VRRT Q  ++  R
Sbjct:   41 VTEDYKRYPRTGKRGAPQVFPRKLFELLEKEDSAVIRWDEEGECFVIQDMDTFTRESLERYFKHHKFTSFQRQLNLYGFRKIAKGERCGYYVHPHFQRDHPEWLSKVRRTPQPGKSTPR 159
[Close]
BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2CXJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXJ7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 8.230e-28
Identity = 66/143 (46.15%), Postives = 93/143 (65.03%), Query Frame = 1 
Query:   46 RYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKRKT-------ETVDDGVP-EYVPASRSRMGS 450
            +YPR G+RGAPQ F  KL+E+L+ ES DI+SWT +G +F I +M+ F +E L+KYF+H   +SFQRQLNLYGFRK  KG D+G + H  F RD    L++VRR  Q++   ++ T       +  +DG+  E +P S   +GS
Sbjct:   72 KYPRTGRRGAPQVFPRKLYEILTLESSDIISWTENGTSFVIQEMDDFVNEILMKYFRHRKYSSFQRQLNLYGFRKIQKGPDTGAYAHEGFLRDDESQLVKVRRWAQSAGRQQKPTLIRAQSKDITEDGLSKEGIPESPESVGS 214
[Close]
BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A6H5KMN3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.070e-27
Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:   55 RFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQAS 369
            R GKRGAPQAFA KL E+L+ ES   +SW  +G AF++HD+E+F+ + L KY++H+  +SFQRQLNLY FRK +KG D+GG+ H  F+RDRP+ L  VRR++  S
Sbjct:   33 RIGKRGAPQAFARKLAEILATESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGS 137
[Close]
BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 125 bits (314), Expect = 2.730e-27
Identity = 57/108 (52.78%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:   46 RYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQAS 369
            +YPR G+RGAPQAFA KL+E+L  E  D++SW  +G AF + D+++F+ E L+KYF+H+  ASFQRQLNLYGFRK  +G D+G + H  F++ +P+LL  VRR+  +S
Sbjct:    2 KYPRTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSS 109
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|339873 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YGA3_9STRA3.500e-247100.00HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A7S2BSE7_9STRA2.010e-3156.36Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2WKC6_9STRA1.480e-3056.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WU52_9STRA6.160e-3057.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2R5C8_9STRA8.150e-3055.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G7U9_9STRA3.290e-2955.14Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7R9YBQ9_9STRA3.680e-2956.30Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2CXJ7_9STRA8.230e-2846.15Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5KMN3_9PHAE2.070e-2755.24HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
A0A6V1QFS1_HETAK2.730e-2752.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_99contigContig_99:143319..149486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|339873|MIX48636_66_33
Descriptionsequence-specific DNA binding
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota
Evalue1.79e-21
Seed ortholog44056.XP_009034364.1
Hectar predicted targeting categoryother localisation
TranscriptId340195
TrackFilteredModels1
ProteinId339873
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339873gene_12241Tribonema minus UTEX_B_3156 geneContig_99 143319..149486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339873Trimin1|339873|MIX48636_66_33Tribonema minus UTEX_B_3156 polypeptideContig_99 143319..148914 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12241_1exon_12241_1Tribonema minus UTEX_B_3156 exonContig_99 143319..143327 +
exon_12241_2exon_12241_2Tribonema minus UTEX_B_3156 exonContig_99 143452..143593 +
exon_12241_3exon_12241_3Tribonema minus UTEX_B_3156 exonContig_99 143697..143762 +
exon_12241_4exon_12241_4Tribonema minus UTEX_B_3156 exonContig_99 143984..144012 +
exon_12241_5exon_12241_5Tribonema minus UTEX_B_3156 exonContig_99 144407..144505 +
exon_12241_6exon_12241_6Tribonema minus UTEX_B_3156 exonContig_99 144987..145128 +
exon_12241_7exon_12241_7Tribonema minus UTEX_B_3156 exonContig_99 146183..146458 +
exon_12241_8exon_12241_8Tribonema minus UTEX_B_3156 exonContig_99 147414..147652 +
exon_12241_9exon_12241_9Tribonema minus UTEX_B_3156 exonContig_99 147752..147965 +
exon_12241_10exon_12241_10Tribonema minus UTEX_B_3156 exonContig_99 148628..149486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12241CDS_12241Tribonema minus UTEX_B_3156 CDSContig_99 143319..143327 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12241UTR3_12241Tribonema minus UTEX_B_3156 three_prime_UTRContig_99 148915..149486 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12241 ID=mRNA_12241|Name=jgi.p|Trimin1|339873|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2075bp|location=Sequence derived from alignment at Contig_99:143319..149486+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCCGGCGACGAGGAGAGTGAAGTGCAGAATGACTTGAAGAGGTA
TCCCAGATTCGGCAAGCGAGGCGCGCCTCAGGCGTTTGCCACCAAGCTGT
TTGAGCTGCTGTCGAATGAGTCACCGGACATTGTGTCATGGACACCTTCA
GGGCTGGCATTCCGGATTCACGACATGGAGAAGTTCACGTCCGAGTGCCT
GATCAAGTACTTCAAGCATAACAACGCCGCCAGCTTCCAACGACAGCTCA
ATTTGTACGGCTTCCGCAAGTCCCTGAAGGGCGAGGACAGCGGCGGCTTC
CAGCACGCTTCCTTCCAGCGCGACAGGCCCGAACTGCTGATAGAGGTGCG
GCGGACGGTACAGGCGAGCCAGGCGGCAAAACGGAAAACGGAGACCGTGG
ACGATGGCGTGCCGGAGTACGTGCCTGCGAGTCGGTCGCGCATGGGGAGC
GCTGCTGGGGGAGCGGGAGGAACAGCGCGCGCGGAAGGCGGCGCAAAACG
GAAACGTGCTAAGGACGACGGCGGCGCGGGCGGCGCCAGCGGCGGCGGCA
GCGGGCGGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGCGGCGGC
GGCGACGCTGTGAGCGCGGAGTTGTACACATCTCCCGCGCAGTTGCAGGT
GATGGCGGGCGGCGCGGTGCAGCAGGCGGCGCCGGAGGGCTACATGCCGA
TGGCGTACCCGGCGATGGGGCTCATGGAGTACTCCATGCTGGGAATACCG
CAGATGGGCGCATTCGGAGGCCTGCTCCTGCCCCCCGGCGCCATGACGAG
CCTCGCCATGCAGTACTACTACCCGGGCGCGGCGGTGGCGGCGGCGGCGG
CGGCGCCCATGGGCGGCGACGACGCGGGCGCCATGGCGGCGGCGGCGGCG
CAGCCGGCGCAGCTGCAGCACATGATGGTGCCGCAGTACGCGCCGTACCT
GTACGGGCAGGCGTTCGGGCAGACGCCGTACGGCGCCACTGCCGCCGTGG
ACGCGCAGATGCAGATGCAGCTGCAGATGATGGGGTACGCGCAGGCGTAC
GCACCGCCGGCGATGGGAGGGGGCTACGCGCAGGGGGCGGTTGCGGAGGG
GGAGGCGCAAGGGGGGGCGGGGGGCGGCATGACGGCGGAGCAGCAGCAGA
TGCAAGCGCAGCTGCAGGCGATGCAGGCCGTGCAGCAGCAGCAGGCCATC
ATGCAGGCGCAGGTGGCACACAACGGCGGCGGCAGCGGTGACTCGTCTGA
CGCTACCAGCCGCAGCGGCAGCGACGGCGCAGCACAGCGACCGCAGTCCC
AGCTGACTGCGGCCATGTCGGTGGCGGACATGGCGGCGGCGGCAGCAGCG
GCGATGGCCGCCGCCGCGCCGCCGGCGCTGCCGCCGCAGGCCGGCTTGCG
AGAGGCGGGCAGCGGGGGCGTACAGGCGCTGTCGCTCTTTGGGCAGGAGG
GGAGGGGGCGGGCAGCGGGCGGCGCTCGCGCATCCGCGGCGGCGGCCACA
TGAGGAGGCGGCGGCATCAGTCGCAGTGTCAGTTGCACTTGGCTCGCTGT
TGCAGGGGCGCCTGCCGTGTCCGCGGCACATGCCCGCTGGTGCGAGCGCC
AGTTGTGCGCCCGGGTGTCGTTGATGCAACGGATATCTCGGTACTCTCTG
TACGACGCTACGCGTTGAGTCGACGACACCTGGAGCTCACGGCAAGCGTG
CCATGTGTTACGGCGAGCAGCAGCTGCGGCACACCGCGGCCGCATGTGTG
TTGCATCGCTCAGTGTCTTCATGTTGAAATTTGCAGTTCTTTGCGCGCGC
GCGCGCATCTTTACGTGGGCGCTGTGTCCATCGCGTGTGCCGGCGGGGAC
ACTGGCAAATCAGTGGTGTGTTTTCTGTGCCGTTGGTTTGCGACGCATGC
GCCATTGGGCGCAGTGCGGCTCCTGTCACCACGGTGCAGATGTAGTCGAC
GCAATGCGTTTTCGGGGCGCGCCGCACCACATGCGCTGCTGCCCGCCGGC
TGTGTACAGCTGCGCCGGCGGATGGAGTAGACACAGATGAGATCTAGACA
ATGACGACGCTGACCTTGATGGTGC
back to top

protein sequence of jgi.p|Trimin1|339873

>Trimin1|339873|MIX48636_66_33 ID=Trimin1|339873|MIX48636_66_33|Name=jgi.p|Trimin1|339873|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=501bp
MEPGDEESEVQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPS
GLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGF
QHASFQRDRPELLIEVRRTVQASQAAKRKTETVDDGVPEYVPASRSRMGS
AAGGAGGTARAEGGAKRKRAKDDGGAGGASGGGSGRRGGGGGGGGGGGGG
GDAVSAELYTSPAQLQVMAGGAVQQAAPEGYMPMAYPAMGLMEYSMLGIP
QMGAFGGLLLPPGAMTSLAMQYYYPGAAVAAAAAAPMGGDDAGAMAAAAA
QPAQLQHMMVPQYAPYLYGQAFGQTPYGATAAVDAQMQMQLQMMGYAQAY
APPAMGGGYAQGAVAEGEAQGGAGGGMTAEQQQMQAQLQAMQAVQQQQAI
MQAQVAHNGGGSGDSSDATSRSGSDGAAQRPQSQLTAAMSVADMAAAAAA
AMAAAAPPALPPQAGLREAGSGGVQALSLFGQEGRGRAAGGARASAAAAT
*
back to top

mRNA from alignment at Contig_99:143319..149486+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12241 ID=mRNA_12241|Name=jgi.p|Trimin1|339873|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6168bp|location=Sequence derived from alignment at Contig_99:143319..149486+ (Tribonema minus UTEX_B_3156 )
ATGGAACCCGTAAGCCTCTGCCTGTCTCGATACTTCAACCTTTGCGGGCG
ATGATACAGCGCATGCATGCAACACTCATCCGGCGTGTTCAAGTTGCGCC
TGACCAAATATCCTTATTGTTGCACTGTTTCAGGGCGACGAGGAGAGTGA
AGTGCAGAATGACTTGAAGAGGTATCCCAGATTCGGCAAGCGAGGCGCGC
CTCAGGCGTTTGCCACCAAGCTGTTTGAGCTGCTGTCGAATGAGTCACCG
GACATTGTGTCATGGACACCTTCAGGTGAATGAAATGACCGCATTGTGTT
CTTTACGCGTCATCGGGAGGAGATCTGTGTGTTTGCGATCTTGTCACTGA
CTGCGTGCTGTGCGTGTCTGCTGCACAGGGCTGGCATTCCGGATTCACGA
CATGGAGAAGTTCACGTCCGAGTGCCTGATCAAGTACTTCAAGCGTGAGT
GCACCTGCCACTTCAGAAATGTGTTTCTCAGCTTGCTTGTTGCCCCAGGT
CGTGTTCGTCTTTGTTCGTGCAAAACCCAAGGTTCACGAGGCTACTGGCA
CCCCGCCACGGCTGATGCGTGTGCGCACACATACGCGTCCGATCGTAGCC
TCGCTGCCGAGCAAGCGGTACTGACAAAGGCGCCTGCCGTACTTTCTGCA
ATCACTCTGCTGCAGATAACAACGCCGCCAGCTTCCAACGACAGGTGCGT
GCTCCCTGCCTGGTGCATTCATGCTTGCTGGCACATGCACGTGTAAAGGA
AAACTGCAGAAAAGCAGGCGAGCAGTAAGCTCCCATTGAGAGAGGTTCGA
GGACTGGCCTCAGTGGCAGCACCAAAAGTGCAGCCTCAAAGAAGCAACAA
ACAGCAGTTTTAGCGAAAACAATCACAGCACTGTGAAAAGGGAACAATCA
CAACGACATCGTCCATTGTGATATTTGTGGGTGTGTCTGACTGTCTGTCA
GGACATGCCAATGCAGCTGCCATTGGCCACATGCAGATGCACCTGCCGGT
GCCCTGATGCGAAGGCCCGGCGCCCACGGCTTTGACGTGCTCAAACTTGC
ACACACGTCATTGTCCCATGCCTGTCACTTCTGCGCAGCTCAATTTGTAC
GGCTTCCGCAAGTCCCTGAAGGGCGAGGACAGCGGCGGCTTCCAGCACGC
TTCCTTCCAGCGCGACAGGCCCGAACTGCTGATAGAGGTGAGCGCGTGGT
GCAGCGCCGCACGGGGTGCCAACTGTAATTTGAAGCTGCAGATCCCGCCA
GGCACTTCATGGATACCTACAAGTCTCGGTGCTGCTCTGCTTTGCAGCCT
ACCCGATCGCTTGTGCACAGCGCGTGCGGTCCGCACGTGACGCTCCGCTG
CGAGGCATCTTGGCGCATCGCGCGGCGTGATGTCATGCATTCGATATCCA
TCAGACAACCAGCTGTCATCGCTGCCAACCCTTGAAGTTTCACTGCTGGA
CGACGACGTCAGAATAATCTTGATTCTGAGTGTTGTCATACGAACATCGT
GTGCCTTGCACCTTGGTTGGCTGGTGCCACTCAACTTCATACATTGGGGC
GTTGCGCAACGTGACGTTGTGTCAGAATACCGCTTGATGTCGTACGTGCC
TCTCCCCAGTTGGGCTGGTGCCACTCAACTTCAACCTCAACTTATTCTCC
CCGGGGTCATGTCTGCAGGTGCGGCGGACGGTACAGGCGAGCCAGGCGGC
AAAACGGAAAACGGAGACCGTGGACGATGGCGTGCCGGAGTACGTGCCTG
CGAGTCGGTCGCGCATGGGGAGCGCTGCTGGGGGAGCGGGAGGAACAGCG
CGCGCGGAAGGTGAGGCGGCATCCTGGCTATGTGTTGTGAACATGAACCC
ATGGCGTGTGTGTGGACCCATTGGTGTGTGTACTCATGGACTTGTAGTCA
GTGAGACACCATCGTGGCTGTGTGCCGTGATCGTGGACCCAATTGTGTGT
GTATGCATGGACTTGTGGTCAGTGAGATATTGTAGCAGTGTGATCGTGGA
CCGAATGGTGTGTGTTCTTGTGGGCTTGCATGTATTCACGAAGGCCCCAA
GGGAGGGGCCAGGTGTCTTGTGCATTCCTGGGATTCATTTTTATGCAGCA
CCTTAGTCTGCCCTGCGCCCTCGGAGCTTGGACACCGGTGCTGCAATGCA
GCACAGCATCCGTGCTCGGCAGGAGAGTAATGAGGAACCGCGGTCGCTGA
TTCTGGATGGCGAGGGCGGGCGCTGCGCAATCGTTCAGGCGCGCAAGCTC
CAGCAGCACGGCGCATGCTTTGCTGCCCACACCATACGCAGTGAGTGGCA
GCAAACGCAGCGAGAAGCACAGGCAGCCGTGCTCGGCGCTGTGTCGTTCA
AAGTGTGTATGAGAGATACAACAGGAAGCTGGAGTACCGGGAGAGGCGGG
TGTTGATACAATTCAGTGACTACGTGGGGGGCGATGGGTTTCATGCCACT
GTGTGCAGCCAGCGATCGGCAGCCGCCATCGCCGGCGCGCTGCTGTTCAA
CTTCATCTTCAACATTATATTCACTGCCGACTTCGTCCAACTTCATCTTG
AACGCTAACGTCACTGTCGAGTGAGGCGTGTCCTGCCATGGACGTGGCAT
AAGTCATGGCATCGCCATGACTTAGCAGTATCAAGCTTGTGTGTGGGCGC
GGAGCACGGCGCCGCGCGCGCGCGCATGTGCCACACAGCGAAACTCTCGA
ATGAGCCGTACAGAGCGCACATGCGAGGAGGCCGCAGTCAGCCGCCCGCA
ATTGTCAGATGCGCCGTGGGTATCGGCGCACCGACATGACGGCTGCTGCG
CAAGCGCGCCTGCGTGCCCGCTGCGCCGCCTGACGGGACTCATGTCGCGT
CCCCCCAAGCGCAGGCGGCGCAAAACGGAAACGTGCTAAGGACGACGGCG
GCGCGGGCGGCGCCAGCGGCGGCGGCAGCGGGCGGCGGGGCGGCGGCGGC
GGCGGCGGCGGCGGTGGTGGCGGCGGCGGCGACGCTGTGAGCGCGGAGTT
GTACACATCTCCCGCGCAGTTGCAGGTGATGGCGGGCGGCGCGGTGCAGC
AGGCGGCGCCGGAGGGCTACATGCCGATGGCGTACCCGGCGATGGGGCTC
ATGGAGTACTCCATGCTGGGAATACCGCAGATGGGCGCATGTGGCGCAGG
TGCGCAGCAGAATTCATTTGCGCTGTCGGTCCTGAGCGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCTGATGGTCTGAACGGTGTC
ACACACACCGCCGTCGGTGTGTGTGAACGGGCCCCAGGTGCTGATGGCGT
ACACGGCGCTCGTGCTCACGGGGTTTCTTGTCCGCTGCTTGTGACGCTGC
CGATGGGCGCCGCGGGTAGGGGCGCGATCGGTTTCAGATGTGTCGTGGCA
TGTCCGTCGCAGCCTCACAACGTTTGTCGTACCGCATGCGAGTTATGCAT
GTCCTGCGCTGGGGCGCATGGGGCGTTCTGATGAGCTGGGACGCCCTGAC
GCCGCATTCGGGAATTTGCCAAGCACGTGCCGCACGTTCCGTTGGATTGC
GTGTTTCAGTTCATGTGTATTATGCCATCTGAGCTTCAACTGCCACTCAC
TTCTTCAATTGTTCGTCAGTGCTCTTCGAGCAGCTCATCATGTGGGCGTG
ATGCCGGGGGCGCCGCCGCTGCGCGCCGCTCGCGCAGGCGCAAGCATCAT
GCGCGCGGTAGCTTGCCTACTATTTGGGCGGAATAGACAGTAAGAGAGTA
TGCACACGGAAGCAGGCCATCAGCTGCGTCGCGCCACCAGCTCTGCAGCA
CAGCCTGAAGAGAGACAGCCAACGCCAGCGGTGCAGCGGCGCGGTGCGGA
GGCGGGCCCGCCGGCGTCGTGGCGTGCGCGCCGCCGCCCCTGGCGTGTGC
ATCCTGGTTGCGCGTGCGCGACTCCCCAGTGCCTCGAGGCATTGCCATAT
GACAGCGCGCTGTCGCCCGCCGCCTTGCCCTGACCCTAACCCTACATCTG
TCGCCCGCCGCCTTGCCCTGACCCTTATACGCCGCTTGGCGGCATCCGCT
CGGCAGCGCCAGGCGCGCCCATGATGGGCGGCATGCTTCCCGCAGTCGGA
GGCCTGCTCCTGCCCCCCGGCGCCATGACGAGCCTCGCCATGCAGTACTA
CTACCCGGGCGCGGCGGTGGCGGCGGCGGCGGCGGCGCCCATGGGCGGCG
ACGACGCGGGCGCCATGGCGGCGGCGGCGGCGCAGCCGGCGCAGCTGCAG
CACATGATGGTGCCGCAGTACGCGCCGTACCTGTACGGGCAGGCGTTCGG
GCAGACGCCGTACGGCGCCACTGCCGCCGTGGACGTGCACCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGAACGGCGGCGGCGGCGGCGAGGCGGCTGGC
GGCGCGGCGGCGGCGGCGGCGGCGGCGCTGCAGGCGCAGATGCAGATGCA
GCTGCAGATGATGGGGTACGCGCAGGCGTACGCACCGCCGGCGATGGGAG
GGGGCTACGCGCAGGGGGCGGTTGCGGAGGGGGAGGCGCAAGGGGGGGCG
GGGGGCGGCATGACGGCGGAGCAGCAGCAGATGCAAGCGCAGCTGCAGGC
GATGCAGGCCGTGCAGCAGCAGCAGGCCATCATGCAGGCGCAGGTGGGTG
CGCGGGCGCGTGCAGTCACTGATTGCGGGGGGAGGGGGTCCATTCGCTTG
TGAACTCTGAGTTGCATGCTGAAATCACCATGCTTTTCCAAACCATGCGT
CAAGTGCGTAGGTACCCATTGCACCGCAGGGTCCTGCTCACAGTGCTCTG
TGTGCCCTGACGATGTTGGCAGGCAATGCTGCAAGCGCAGGTGCAGTCGC
AGCAGCAGCAGCTGGAGCACGCGCAACAGCAGGGCGTCATTGAAGCAGCC
ACCAGCAGCAGCGGCGAGCAGCAGGAGGAGGAGGAGCAGGAGGAGGAAGC
GCAGCCGACAGGCCGCGCCGCTGCAGAGCTGCTGGCGGCGAGCGCGCTGT
CGCAGCAGCTGCAGCACCAGTTTGATGCGCAGCAGCAGCAGCTGGACGTG
CGGCAGCAACAACTGCAGCAGCAGCAGCAGCAGGCGGCGTCCGAGGACCC
GCAGCAGGTGCAGATGTCGGCGATGCAGGCCACGATGCAGGTGCAGATGC
AGGCGGCCATGCAGCAGCGCCACATGCAGCAGCAGGAGCGCGCGCACTCG
CAGATCTCGCAGCAGCTTCAGCTGCAGCAGGCCATGCAGCAGCAGCAGGC
GCAGGTCGCGTCGGTGCTGGCCGCGCAGCAGCAGATGCAGCTGCTGCAAG
CCGCCGCAGCACACAACGGCGGCGGCAGCGGTGACTCGTCTGACGCTACC
AGCCGCAGCGGCAGCGACGGCGCAGCACAGCGACCGCAGTCCCAGCTGAC
TGCGGCCATGTCGGTGGCGGACATGGCGGCGGCGGCAGCAGCGGCGATGG
CCGCCGCCGCGCCGCCGGCGCTGCCGCCGCAGGCCGGCTTGCGAGAGGCG
GGCAGCGGGGGCGTACAGGCGCTGTCGCTCTTTGGGCAGGAGGGGAGGGG
GCGGGCAGCGGGCGGCGCTCGCGCATCCGCGGCGGCGGCCACATGAGGAG
GCGGCGGCATCAGTCGCAGTGTCAGTTGCACTTGGCTCGCTGTTGCAGGG
GCGCCTGCCGTGTCCGCGGCACATGCCCGCTGGTGCGAGCGCCAGTTGTG
CGCCCGGGTGTCGTTGATGCAACGGATATCTCGGTACTCTCTGTACGACG
CTACGCGTTGAGTCGACGACACCTGGAGCTCACGGCAAGCGTGCCATGTG
TTACGGCGAGCAGCAGCTGCGGCACACCGCGGCCGCATGTGTGTTGCATC
GCTCAGTGTCTTCATGTTGAAATTTGCAGTTCTTTGCGCGCGCGCGCGCA
TCTTTACGTGGGCGCTGTGTCCATCGCGTGTGCCGGCGGGGACACTGGCA
AATCAGTGGTGTGTTTTCTGTGCCGTTGGTTTGCGACGCATGCGCCATTG
GGCGCAGTGCGGCTCCTGTCACCACGGTGCAGATGTAGTCGACGCAATGC
GTTTTCGGGGCGCGCCGCACCACATGCGCTGCTGCCCGCCGGCTGTGTAC
AGCTGCGCCGGCGGATGGAGTAGACACAGATGAGATCTAGACAATGACGA
CGCTGACCTTGATGGTGC
back to top

Coding sequence (CDS) from alignment at Contig_99:143319..149486+

>mRNA_12241 ID=mRNA_12241|Name=jgi.p|Trimin1|339873|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1503bp|location=Sequence derived from alignment at Contig_99:143319..149486+ (Tribonema minus UTEX_B_3156 )
ATGGAACCCGGCGACGAGGAGAGTGAAGTGCAGAATGACTTGAAGAGGTA
TCCCAGATTCGGCAAGCGAGGCGCGCCTCAGGCGTTTGCCACCAAGCTGT
TTGAGCTGCTGTCGAATGAGTCACCGGACATTGTGTCATGGACACCTTCA
GGGCTGGCATTCCGGATTCACGACATGGAGAAGTTCACGTCCGAGTGCCT
GATCAAGTACTTCAAGCATAACAACGCCGCCAGCTTCCAACGACAGCTCA
ATTTGTACGGCTTCCGCAAGTCCCTGAAGGGCGAGGACAGCGGCGGCTTC
CAGCACGCTTCCTTCCAGCGCGACAGGCCCGAACTGCTGATAGAGGTGCG
GCGGACGGTACAGGCGAGCCAGGCGGCAAAACGGAAAACGGAGACCGTGG
ACGATGGCGTGCCGGAGTACGTGCCTGCGAGTCGGTCGCGCATGGGGAGC
GCTGCTGGGGGAGCGGGAGGAACAGCGCGCGCGGAAGGCGGCGCAAAACG
GAAACGTGCTAAGGACGACGGCGGCGCGGGCGGCGCCAGCGGCGGCGGCA
GCGGGCGGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGCGGCGGC
GGCGACGCTGTGAGCGCGGAGTTGTACACATCTCCCGCGCAGTTGCAGGT
GATGGCGGGCGGCGCGGTGCAGCAGGCGGCGCCGGAGGGCTACATGCCGA
TGGCGTACCCGGCGATGGGGCTCATGGAGTACTCCATGCTGGGAATACCG
CAGATGGGCGCATTCGGAGGCCTGCTCCTGCCCCCCGGCGCCATGACGAG
CCTCGCCATGCAGTACTACTACCCGGGCGCGGCGGTGGCGGCGGCGGCGG
CGGCGCCCATGGGCGGCGACGACGCGGGCGCCATGGCGGCGGCGGCGGCG
CAGCCGGCGCAGCTGCAGCACATGATGGTGCCGCAGTACGCGCCGTACCT
GTACGGGCAGGCGTTCGGGCAGACGCCGTACGGCGCCACTGCCGCCGTGG
ACGCGCAGATGCAGATGCAGCTGCAGATGATGGGGTACGCGCAGGCGTAC
GCACCGCCGGCGATGGGAGGGGGCTACGCGCAGGGGGCGGTTGCGGAGGG
GGAGGCGCAAGGGGGGGCGGGGGGCGGCATGACGGCGGAGCAGCAGCAGA
TGCAAGCGCAGCTGCAGGCGATGCAGGCCGTGCAGCAGCAGCAGGCCATC
ATGCAGGCGCAGGTGGCACACAACGGCGGCGGCAGCGGTGACTCGTCTGA
CGCTACCAGCCGCAGCGGCAGCGACGGCGCAGCACAGCGACCGCAGTCCC
AGCTGACTGCGGCCATGTCGGTGGCGGACATGGCGGCGGCGGCAGCAGCG
GCGATGGCCGCCGCCGCGCCGCCGGCGCTGCCGCCGCAGGCCGGCTTGCG
AGAGGCGGGCAGCGGGGGCGTACAGGCGCTGTCGCTCTTTGGGCAGGAGG
GGAGGGGGCGGGCAGCGGGCGGCGCTCGCGCATCCGCGGCGGCGGCCACA
TGA
back to top