mRNA_12102 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351239
Unique Name	mRNA_12102
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351239 vs. uniprot
Match: A0A835YT37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT37_9STRA)

HSP 1 Score: 1185 bits (3066), Expect = 0.000e+0
Identity = 699/699 (100.00%), Postives = 699/699 (100.00%), Query Frame = 1

Query:    1 MRASPQEYVCRSLKDTLDENASELLGAVNGFAAGSWPLLLSAAKLDAARLPPASAAEEAVARGERAAAPKSGGALRPPRLPPLPPLDVFEGDGQEAMARSERAAAAAAAAVGVSEGEAQXXXXXXXXXXXXXXQTAPXXXXXXXXXXXRVRKPXXXXXXXXXXXXXXRDCELPMRLPXXXXXXXXXXXXXGRPPTRSRVLLLRLLLEFSLVLEEQGPLGMQIDIVELPGGGRRLLVAGLVPGAQVNTNFSYNFKLRNRKYAVEQGMLLGAGLVPGAEAERQLGSAASEVVGSELVGLGSERLDDRPLEHCLTLLRDAPRPVKIVTPADVIRVSFTDQSLGLRFKPSPLHGPTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQQLKGLPRPIEFALLDVPDVHVEFTAPPLDLRLQYMQGHIVVIDIVKVESPLCEKLQQCHMLLAVTNLSLPSPHHQYACKQASQSALTTADLRIGGLCAPALCAEGLSISRVSIPEGHVLLTVNGLSLPSPHGKYDKDVAMLSAPTMYPLKLRFARDNSAATGATPPGSXXXXXXXXXXXXXXXXXXADGYMGSGYVTSYKRSMGRAVEVTVADPEDMAMAFEKGKDGRPRIKALSLVDGPARHSNRVQVGMVLMAINGVPLSKKANTCASCRQLLAATSYPATITFRNMSAFLAAAQRL 2097
            MRASPQEYVCRSLKDTLDENASELLGAVNGFAAGSWPLLLSAAKLDAARLPPASAAEEAVARGERAAAPKSGGALRPPRLPPLPPLDVFEGDGQEAMARSERAAAAAAAAVGVSEGEAQXXXXXXXXXXXXXXQTAPXXXXXXXXXXXRVRKPXXXXXXXXXXXXXXRDCELPMRLPXXXXXXXXXXXXXGRPPTRSRVLLLRLLLEFSLVLEEQGPLGMQIDIVELPGGGRRLLVAGLVPGAQVNTNFSYNFKLRNRKYAVEQGMLLGAGLVPGAEAERQLGSAASEVVGSELVGLGSERLDDRPLEHCLTLLRDAPRPVKIVTPADVIRVSFTDQSLGLRFKPSPLHGPTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQQLKGLPRPIEFALLDVPDVHVEFTAPPLDLRLQYMQGHIVVIDIVKVESPLCEKLQQCHMLLAVTNLSLPSPHHQYACKQASQSALTTADLRIGGLCAPALCAEGLSISRVSIPEGHVLLTVNGLSLPSPHGKYDKDVAMLSAPTMYPLKLRFARDNSAATGATPPGSXXXXXXXXXXXXXXXXXXADGYMGSGYVTSYKRSMGRAVEVTVADPEDMAMAFEKGKDGRPRIKALSLVDGPARHSNRVQVGMVLMAINGVPLSKKANTCASCRQLLAATSYPATITFRNMSAFLAAAQRL
Sbjct:    1 MRASPQEYVCRSLKDTLDENASELLGAVNGFAAGSWPLLLSAAKLDAARLPPASAAEEAVARGERAAAPKSGGALRPPRLPPLPPLDVFEGDGQEAMARSERAAAAAAAAVGVSEGEAQXXXXXXXXXXXXXXQTAPXXXXXXXXXXXRVRKPXXXXXXXXXXXXXXRDCELPMRLPXXXXXXXXXXXXXGRPPTRSRVLLLRLLLEFSLVLEEQGPLGMQIDIVELPGGGRRLLVAGLVPGAQVNTNFSYNFKLRNRKYAVEQGMLLGAGLVPGAEAERQLGSAASEVVGSELVGLGSERLDDRPLEHCLTLLRDAPRPVKIVTPADVIRVSFTDQSLGLRFKPSPLHGPTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQQLKGLPRPIEFALLDVPDVHVEFTAPPLDLRLQYMQGHIVVIDIVKVESPLCEKLQQCHMLLAVTNLSLPSPHHQYACKQASQSALTTADLRIGGLCAPALCAEGLSISRVSIPEGHVLLTVNGLSLPSPHGKYDKDVAMLSAPTMYPLKLRFARDNSAATGATPPGSXXXXXXXXXXXXXXXXXXADGYMGSGYVTSYKRSMGRAVEVTVADPEDMAMAFEKGKDGRPRIKALSLVDGPARHSNRVQVGMVLMAINGVPLSKKANTCASCRQLLAATSYPATITFRNMSAFLAAAQRL 699

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BLAST of jgi.p|Trimin1|351239 vs. uniprot
Match: D8LTI7_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI7_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 2.840e-39
Identity = 142/496 (28.63%), Postives = 218/496 (43.95%), Query Frame = 1

Query:  688 GGRRLLVAGLVPGAQVNTNFSYNFKLRNRKYAVE---QGMLLGAGLVPGAEAERQLGSAASEVVGSELVGLGSERLDDRPLEHCLTLLRDAPRPVKIV-------------------------TPADVIRVSFTDQSLGLRFKPSPLHGPTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQQLKGLPRPIEFALLDVPDVHVEFTAPPLDLRLQYMQGHIVVIDIVKVESPLCEKLQQCHMLLAVTNLSLPSPHHQYACKQASQSALTTADLRIGGLCAPALCAEGLSISRVSIPEGHVLLTVNGLSLPSPHGKYDKDVAMLSAPTMYPLKLRFARDNSAATGATPPGSXXXXXXXXXXXXXXXXXXADGYMGS-GYVTSYKRSMGRAV-EVTVADPEDMAMAFEKGKDGRPRIKALSLVDGPARHSNRVQVGMVLMAINGVPLSKKANTCAS-CRQLLAATSYPATITFRNMSAFLA 2082
            GG    +AGL  GA        N +     + V+   + +L   G V     +   G    EV G+EL+ +G   ++       L LLR +PRPV+++                          P  ++  +F  +SLG++F+ S   G   T + GF+R  +G  R AEA G + PGQ+L+++NG RV+G  F  +V+ L+ +PRP+ F L    DV V   APPL+L L+ + G + V    +V +                                                  AL A G      ++  G  L++VNG+ LP   G Y KD A+L AP M+P++LR  R  +AA  A                       A    GS   +  Y+ ++  +  EV  A PED+++  E+GKDGRP + ++  V G       +Q GMVL+AI+G P++       S CR+ L A +YP T+TFR+M  +L+
Sbjct: 1088 GGVMASIAGLAGGATGAAAVVVNHRALEEAFVVQGEGRRVLNLKGFV-----QEDFGVVFDEV-GAELLSVGGASVEGLEGTKVLGLLRSSPRPVQMMFRCYVPDVAEAVAASALGKDAEALPPPDGLVTATFKQRSLGVKFRASSTLGTRVTTVGGFSRDLEGRMREAEASGLLVPGQLLYSVNGRRVIGQEFADLVRGLQKVPRPVTFGLAPSIDVRVTVDAPPLELELRRVSGRVTVTGFCEVPT--------------------------------------------------ALEASG------AVQPGDTLISVNGIPLPGA-GCYRKDAALLEAPGMFPMRLRIRRAGAAAEDAD------GGDAEGFVDPARGGRGAQALEGSLSRLKQYQNAVSASPSEVLAATPEDLSLKVEEGKDGRPVVLSMPYVRGKLEKGGVIQPGMVLVAIDGAPIAGGHFASVSDCRRSLDAVAYPCTLTFRDMPKWLS 1514

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BLAST of jgi.p|Trimin1|351239 vs. uniprot
Match: A0A7S2WE33_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WE33_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.060e-8
Identity = 84/307 (27.36%), Postives = 118/307 (38.44%), Query Frame = 1

Query:  628 LVLEEQGPLGMQIDIVELPGGGRRLLVAGLVPGAQVNTNFSYNFKLRNRKYAVEQGMLLGAGLV-PGAEAERQLGSAASEVVGSELVGLGSERLDDRPLEHCLTLLRDAPRP--VKIVTPADVIR--------------------------VSFTDQSLGLRFKPSPLHGPTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQQLKGLPRPIE------FALLDVPDVHVEFTAPPLDLRLQYMQG----HIVVIDIVKVE---SPL--CEKLQQCHMLLAVTNLSLPSP 1416
            LVL ++GPLG+ +DI                                 R Y    G + G   V P  E E+  G  A    G+ LVG+    L ++ +   L L++   RP  +  V PA  +                           V F   +LGLR   S L  P   E+AGFARAP+G+   AEAC  + PG +L  +N  ++  +   QV   L+      E       A L  P V V+F  PPLD+ L  +      H+ VI   +      P+    KL+    LLA   L+ P P
Sbjct:  269 LVLPDEGPLGLHLDIST------------------------------KRSYVRFSGPVEGGQAVRPVQELEKDFGPLA----GAFLVGVDDVNLSNKSVAEALVLIKQPTRPKIMTFVLPAPKLESDQPGGTSSQHTQPSPQGGTDLSPIFVEFRSTTLGLRLNASRLI-PELVEVAGFARAPNGSLLPAEACQVLEPGMLLLGVNNVKIWKMPLSQVAALLRDAALATEKGTTVRLAFLPSPLVTVDFKEPPLDMVLAQVPAPGGRHLTVITGFQPSHHPGPMERSGKLRPGDALLAANGLTFPGP 540

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351239 vs. uniprot

BLAST of jgi.p|Trimin1|351239 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YT37_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LTI7_ECTSI	2.840e-39	28.63	Rhodanese domain-containing protein n=2 Tax=Ectoca...	[more]
A0A7S2WE33_9STRA	1.060e-8	27.36	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_84	contig	Contig_84:134142..143103 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351239\|estExt_Genemark1.C_Ctg_840023
Max annot lvl	2759\|Eukaryota
EggNOG OGs	28JPJ@1\|root,2QS2W@2759\|Eukaryota
Evalue	5.81e-40
Seed ortholog	2880.D8LTI7
Hectar predicted targeting category	other localisation
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-02_005770.1
TranscriptId	351561
Track	FilteredModels1
ProteinId	351239

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351239	gene_12102	Tribonema minus UTEX_B_3156	gene	Contig_84 134142..143103 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12102_1	exon_12102_1	Tribonema minus UTEX_B_3156	exon	Contig_84 134142..134423 +
exon_12102_2	exon_12102_2	Tribonema minus UTEX_B_3156	exon	Contig_84 134517..134591 +
exon_12102_3	exon_12102_3	Tribonema minus UTEX_B_3156	exon	Contig_84 134673..134717 +
exon_12102_4	exon_12102_4	Tribonema minus UTEX_B_3156	exon	Contig_84 134797..134851 +
exon_12102_5	exon_12102_5	Tribonema minus UTEX_B_3156	exon	Contig_84 134947..135059 +
exon_12102_6	exon_12102_6	Tribonema minus UTEX_B_3156	exon	Contig_84 135206..135253 +
exon_12102_7	exon_12102_7	Tribonema minus UTEX_B_3156	exon	Contig_84 136222..136335 +
exon_12102_8	exon_12102_8	Tribonema minus UTEX_B_3156	exon	Contig_84 136434..136532 +
exon_12102_9	exon_12102_9	Tribonema minus UTEX_B_3156	exon	Contig_84 137607..137747 +
exon_12102_10	exon_12102_10	Tribonema minus UTEX_B_3156	exon	Contig_84 138835..139002 +
exon_12102_11	exon_12102_11	Tribonema minus UTEX_B_3156	exon	Contig_84 140005..140094 +
exon_12102_12	exon_12102_12	Tribonema minus UTEX_B_3156	exon	Contig_84 140686..140823 +
exon_12102_13	exon_12102_13	Tribonema minus UTEX_B_3156	exon	Contig_84 140958..141131 +
exon_12102_14	exon_12102_14	Tribonema minus UTEX_B_3156	exon	Contig_84 141384..141643 +
exon_12102_15	exon_12102_15	Tribonema minus UTEX_B_3156	exon	Contig_84 142364..142505 +
exon_12102_16	exon_12102_16	Tribonema minus UTEX_B_3156	exon	Contig_84 142852..143103 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12102	CDS_12102	Tribonema minus UTEX_B_3156	CDS	Contig_84 134142..134423 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_12102	UTR3_12102	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_84 143008..143103 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351239	Trimin1\|351239\|estExt_Genemark1.C_Ctg_840023	Tribonema minus UTEX_B_3156	polypeptide	Contig_84 134142..143007 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_84:134142..143103+
coding sequence from alignment at Contig_84:134142..143103+

spliced messenger RNA

>mRNA_12102 ID=mRNA_12102|Name=jgi.p|Trimin1|351239|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2196bp|location=Sequence derived from alignment at Contig_84:134142..143103+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCGTCACCGCAGGAGTACGTCTGCCGCAGCCTCAAGGACACGCT
CGACGAGAACGCGTCCGAGCTCCTGGGCGCCGTCAATGGCTTTGCGGCGG
GGTCGTGGCCGCTGCTGCTGAGCGCTGCCAAACTCGACGCGGCGCGCCTG
CCGCCTGCAAGCGCCGCGGAGGAGGCGGTCGCGCGTGGCGAGCGCGCCGC
AGCGCCTAAAAGCGGCGGCGCGCTGCGGCCGCCGCGGCTGCCGCCGCTGC
CACCGCTGGACGTGTTTGAGGGCGATGGCCAGGAGGCAATGGCGCGCAGC
GAGCGCGCTGCGGCCGCCGCCGCTGCCGCCGTGGGCGTGTCTGAGGGCGA
GGCCCAGCTGCCGCCGCTGCCGCCGCTTGATGTGTTTGAGGGCGAGGGCC
AGACAGCGCCGCTGCCGCCGCTGGACGTGTTTGAGGGCGAGGGCCGGGTG
CGGAAGCCGCCGCTGCCGTCGCTCGACGTGTTTGAAGGCGAGGGACAGGT
GCGTGATTGCGAGTTACCCATGCGGCTGCCGCCGCTGCCGCCGCTCAACG
TGTTTGAGGGCGATGGCCAGGGGCGACCGCCCACGCGCAGTCGTGTGCTG
CTGCTGCGGCTGCTGCTGGAGTTCAGCTTGGTGCTTGAGGAGCAAGGGCC
TTTGGGCATGCAAATAGACATTGTGGAACTACCCGGGGGCGGCAGGCGTC
TGCTGGTGGCAGGCCTGGTGCCGGGGGCTCAGGTGAACACAAACTTCAGC
TATAACTTCAAGCTCAGGAACAGAAAATATGCGGTAGAGCAGGGAATGCT
GCTGGGGGCGGGCCTGGTGCCGGGGGCCGAGGCGGAGCGTCAGCTAGGCT
CCGCTGCCTCAGAGGTGGTCGGCAGCGAGCTCGTGGGGCTTGGGTCAGAG
CGGCTCGACGACAGGCCGCTTGAGCACTGCCTCACGCTGCTGCGCGACGC
GCCGCGGCCGGTCAAGATCGTCACACCCGCAGATGTGATACGAGTGTCAT
TTACGGACCAGAGCCTGGGCCTACGCTTCAAGCCAAGCCCGCTGCACGGT
CCCACCGCCACGGAGATTGCCGGGTTTGCGCGCGCTCCCGACGGCACGGA
GCGTGTAGCGGAAGCGTGTGGCCAAGTGGCGCCTGGTCAGGTTCTCTGGG
CCATCAACGGCAACAGGGTGCTGGGAGTGGCATTTCAACAAGTCGTCCAG
CAGCTCAAGGGCCTACCAAGGCCTATCGAGTTTGCGCTGCTGGACGTCCC
CGATGTCCACGTGGAGTTCACAGCGCCGCCCCTGGACCTGCGGCTGCAGT
ACATGCAGGGGCACATTGTGGTCATCGACATTGTCAAAGTGGAGTCCCCG
CTCTGCGAGAAGCTGCAGCAGTGCCACATGCTCCTCGCCGTCACCAATCT
GTCGCTGCCGTCGCCGCATCACCAGTACGCGTGCAAGCAAGCCTCACAAT
CAGCGCTCACCACCGCCGATCTGCGCATCGGCGGTCTGTGCGCGCCGGCG
CTGTGCGCTGAGGGGTTGTCGATATCACGCGTCTCGATACCTGAGGGCCA
TGTGCTGCTGACGGTCAACGGCCTGTCGCTGCCGTCGCCGCACGGCAAGT
ACGACAAGGACGTGGCGATGCTCAGCGCGCCCACCATGTACCCCCTCAAG
CTGCGCTTTGCACGCGACAACAGTGCCGCCACAGGCGCTACGCCCCCGGG
CTCGCCGGGCAGCGACAATGGTGATGCTGCTGCGGCGACGGCGGCGGCGG
CGGCAGCTGCGGATGGGTATATGGGGTCCGGCTACGTCACGTCGTACAAG
AGATCCATGGGCCGAGCGGTGGAGGTGACGGTTGCAGATCCTGAAGACAT
GGCAATGGCATTTGAGAAGGGCAAGGATGGGCGCCCGCGCATCAAAGCAC
TTTCCCTGGTGGACGGGCCCGCACGCCACAGCAATCGAGTGCAGGTCGGC
ATGGTTCTCATGGCAATCAACGGCGTGCCGCTGAGCAAGAAGGCCAACAC
GTGCGCATCGTGCCGCCAGTTGCTAGCGGCAACATCGTATCCGGCGACCA
TTACATTCCGCAACATGTCTGCCTTCCTGGCCGCAGCACAACGCCTGTAG
TGCCCCTTACGTCCGCGTTTTTGACGGTGGCGTGGTTTGTGTTTTGCTCC
ATACTTGTCGTGCATGTGTCATACCATAATACAGCGGTGTCCCCCA

protein sequence of jgi.p|Trimin1|351239

>Trimin1|351239|estExt_Genemark1.C_Ctg_840023 ID=Trimin1|351239|estExt_Genemark1.C_Ctg_840023|Name=jgi.p|Trimin1|351239|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=700bp
MRASPQEYVCRSLKDTLDENASELLGAVNGFAAGSWPLLLSAAKLDAARL
PPASAAEEAVARGERAAAPKSGGALRPPRLPPLPPLDVFEGDGQEAMARS
ERAAAAAAAAVGVSEGEAQLPPLPPLDVFEGEGQTAPLPPLDVFEGEGRV
RKPPLPSLDVFEGEGQVRDCELPMRLPPLPPLNVFEGDGQGRPPTRSRVL
LLRLLLEFSLVLEEQGPLGMQIDIVELPGGGRRLLVAGLVPGAQVNTNFS
YNFKLRNRKYAVEQGMLLGAGLVPGAEAERQLGSAASEVVGSELVGLGSE
RLDDRPLEHCLTLLRDAPRPVKIVTPADVIRVSFTDQSLGLRFKPSPLHG
PTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQ
QLKGLPRPIEFALLDVPDVHVEFTAPPLDLRLQYMQGHIVVIDIVKVESP
LCEKLQQCHMLLAVTNLSLPSPHHQYACKQASQSALTTADLRIGGLCAPA
LCAEGLSISRVSIPEGHVLLTVNGLSLPSPHGKYDKDVAMLSAPTMYPLK
LRFARDNSAATGATPPGSPGSDNGDAAAATAAAAAAADGYMGSGYVTSYK
RSMGRAVEVTVADPEDMAMAFEKGKDGRPRIKALSLVDGPARHSNRVQVG
MVLMAINGVPLSKKANTCASCRQLLAATSYPATITFRNMSAFLAAAQRL*

mRNA from alignment at Contig_84:134142..143103+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12102 ID=mRNA_12102|Name=jgi.p|Trimin1|351239|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8962bp|location=Sequence derived from alignment at Contig_84:134142..143103+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCGTCACCGCAGGAGTACGTCTGCCGCAGCCTCAAGGACACGCT
CGACGAGAACGCGTCCGAGCTCCTGGGCGCCGTCAATGGCTTTGCGGCGG
GGTCGTGGCCGCTGCTGCTGAGCGCTGCCAAACTCGACGCGGCGCGCCTG
CCGCCTGCAAGCGCCGCGGAGGAGGCGGTCGCGCGTGGCGAGCGCGCCGC
AGCGCCTAAAAGCGGCGGCGCGCTGCGGCCGCCGCGGCTGCCGCCGCTGC
CACCGCTGGACGTGTTTGAGGGCGATGGCCAGGTGCGGAAGCATCGCAAT
TGCGAGTTTGCGAATGTGCGCTACTGCTGTATCTGTCAAGGCGTACTACT
TGAAGCGGTACATAGCGCCGCATAGGAGGCAATGGCGCGCAGCGAGCGCG
CTGCGGCCGCCGCCGCTGCCGCCGTGGGCGTGTCTGAGGGCGAGGCCCAG
GTGCGGAAGCGTCGCGATCGCGAGTTGCCCTACTTAAGCAATAGACTCAC
AAAGGCACAAGAGTGCAGCGCGGGCCTGCAGCTGCCGCCGCTGCCGCCGC
TTGATGTGTTTGAGGGCGAGGGCCAGGTGTGGACGCGTCGTCATCGCGAG
TTTGAGTGTGTGCACTACTGCTGTATCTGTCAAGGCGTACTACTTGAAGC
AGTAGACAGCGCCGCTGCCGCCGCTGGACGTGTTTGAGGGCGAGGGCCGG
GTGCGGAAGCGTCGCGATTGCGAGTTGCCTGCGTGCGCTGCCATACTGTT
CGTACTTCTTGAAGCTGTAGATAGCCCCGCGGAGGAGGCGTTGGTGCGCG
GCGAGCGCCGCTGCCGTCGCTCGACGTGTTTGAAGGCGAGGGACAGGTGC
GTGATTGCGAGTTACCCATGCGGCTGCCGCCGCTGCCGCCGCTCAACGTG
TTTGAGGGCGATGGCCAGGTGCGGAGGTGTCGTGATTGCGAGTTTGAGCA
TGTGCACTACAGTACTGCTGTATCTATGAGTTTGTACTGCATGGAAGTCG
CAGATCTCGCAAAGGCTTCAGAGCGCAGCGCTAGGCTGCTGCTGCCGCCG
CCTCCGTGCGCAAGGGGCGACCGCCCACGCGCAGTCGTGTGCTGCTGCTG
CGGCTGCTGCTGGTGCGGCTGCGTGAGCACCTCAACGGTCATTGAACATT
TTCTCAGCAGTGAGTACTGGGACGTGCCTGCACCGCTGCTGCTGCGCTAG
ATGTATTAGAGCGCGGGGGCGCTAGGTGCAGAAGCGAAACTGCGCGTTGC
CTGCACTTGTTCTGCTGCATGTATTCTTCAACGGTGATTTCTCAGGAGCT
GGCAAACGCAACTCATAGCTGTGCACCTGCCGCCGGTGGACGCATTTGAG
CAAAGGCTGGATGCAAAATCATCACGGTGTGCACCATCTGCCTCTCTACA
GTATGTTACGGACTGGTGACTAGTGGACGGGTCTCGATGCAAATTGCTTG
GAGTCGATGCGCTATGATCACTGTAGAGCAGTGGCAGGCGCACATAGGAG
CGCAAGCAGTTGAGACACGTGTGCAATGGCGGCAAAAAACTGTCATAATG
GGGAGCGCCTGATCGTAACGGCGAAGACGAAAGCGCATGAGTATCGGGCC
AGCGAGCGGAAATGCACGTGCGACCTCATCTGCGGCTGCTGCCGCCTGTG
TAGATGTGAGGGGCGGGTGTGATTTGGAGAAGATCGTATGTTCACTACTG
TGACAGGGTCTTTACAAGATGCAGCCTTGCCAAGAAGCAATTGGGCGCAT
GAATGGTGCACGCGAGCGCAGCATGCCGCTGTCCCCTGTCTACGCTGTGA
GCAGGCATGCGGTGGGAAGGAAAGCTGAGATAATGCATTGAGTGCAAGTC
CACAATAGTCTACTTCAATGAGCATACATCTGTGCGCGCATCCCAAATGG
AACAGATTGTCAAGACGCCACGGTCATCTGACAGGCACCCCAAGGCTGCA
TTATGTGGCGAAAAGGGGACACACCAGCTACATACGCTTCGAATAGTTGA
CACTGTCTTGGAGAAGCTCACGTCTGCTGATCGCGCACCGCTGCTGTTTT
GGTCTGCAGTTGCGCGGGTTGATTCCGCAGGAGTTCAGCTTGGTGCTTGA
GGAGCAAGGGCCTTTGGGCATGCAAATAGACATTGTGGAACTACCCGGGG
GCGGCAGGCGTCTGCTGGTGGCAGGCCTGGTGCCGGGGGCTCAGGTGATC
ACAATGATCAATTGCACTTCAAGCTCAGTGACGAAAAATATGCCGTAGAG
CAGGGAATGCTGCTGGTGCCAGGCCTGGTGCCAGGGGCCCAGGTGAACAC
AAACTTCAGCTATAACTTCAAGCTCAGGAACAGAAAATATGCGGTAGAGC
AGGGAATGCTGCTGGGGGCGGGCCTGGTGCCGGGGGCCGAGGTGAACACA
AACTTCAATTGCAACTTCAAGCTCAGTGACGAAAATATGCCGTAGAGCAG
GAAATGCTGCTGGTGGCAGGCCTGGTGCCGGGGGCGGGGGCCCAGTTGAA
CTTCAATGTCAGTTGCGACTTCAAGTTCAGCGGCAACATTTGTTTCTAAT
TCAGATTTTTCTTATTTGCAGTAGAGCATGAAATGTTCTTGGCATGGGCG
GCCCCCCGAGTAGATTAGATGTGTTAAGGGTCAGGGTGAGGTACGCTTAC
ATGCCCTGTGCGGAGCCACTCACAACACCGCAGCAGGAGCAGTGCCCACA
GAATCTGCCCAAACTGCAGGCAACTTTTGGATGCTGAACCCCCCGGTACT
CTGGAGTTCAAGGTATATGCATGGTTCAAAGCACTCTTCTCCAAAGTGGG
CATGTACTTCTTTGTCACGTACTACTGTTAGGGCCGTCCAGTGCTGAGAA
CATGCTGCAAAGTGCCAGGGGCAAGCGGCCAGCGGGCGGTGGTGTATTGT
GCATGCTCTGAGCGTAAAAGCTACCACGACATTGTGGAGTGACATGCGTG
CTCCGGCAGCGTCAGACTGGGGCACGGGCTTAGGCAGTGAAGTGTTGCAA
AACAGCGATGGCAGCGTTCACGCGCCTTTGTTAGTAGTTCGGGTCGGCAA
GACCCTGCGGTCCAACACCGGAGCAGAAAGCCATCGCTAACACTGCACTT
CGTTGCTCGGAGGGGCAGGGGCGGGCGACACGGGAACCGGGCGTGTGACA
TCTGCTCTGCTACCGGCTGCTGCCGGCCGCCGTTGACGCTGACCCTAACC
CCAACCCTATATCGTGCACTCTGGCGGAGCGCGCCAGCCATTACTCAGCC
TGATCCTTACCCTATACCACCCTGCGCTCAGGCGGAGGGCAAGCTAATCC
TTGCCCCTGTTGACCTCACTACTTGATAACCCTACTACTCCGTGTACTCG
GGCAGAGCGCCAGCTAACCCTTGCCCCTACCCTAACCCTAACCCGAGCAC
TCACAGTGAGAGCGCCAGCAGCCAGTATTCAACACATTAACTTCAACCCT
ACTCCCCGCACTCAGGCGGAGCGTCAGCTAGGCTCCGCTGCCTCAGAGGT
GGTCGGCAGCGAGCTCGTGGGGCTTGGGTCAGAGCGGCTCGACGACAGGC
CGCTTGAGCACTGCCTCACGCTGCTGCGCGACGCGCCGCGGCCGGTCAAG
ATCGTCGTCAGGCGAGTGCTCCGTGATTTTGAATTGGCAGGTGTACTTTG
AAGTGTAGTCTGAAGTACTTGGCTGAGTATTTGTCGGTGTGAGGTATAAC
AGATTTTTTTCTGGGTGTGTGGGGCTATAGGACGCGGTCAGGCGAGCGCC
CAGCGGTGTGGATACTTCACCTATGAAGTAATGATGTGCTGTACGACTTC
ACAGACGCCCCTCAGCCAGATGCATGCGCCCTGAGCACTGCCTCATGCTG
CTGAGGGATGCGCCGCGGCCGGTCGAGATTGTGGTCAGGTGAGTGCTCTG
TGGCATTGAAATGGCAGGTGTAGATTCAAACACTAGTTTCAGGTACTTGG
TTGAACGAATATTGCCGGTATTTGTGTGTTTGATGGCAGGTGTATGGTAA
GTTACTTGGCTGGATATTCATCAGTAATCATCAGTGCGATGTTGAGTGTA
TGCCGCGCCGGGTAAAAGCCATGGCCACGCAAGTACCCAAAGGGTTGTGC
AATCTTCAATGATGAAGTACATATTCGCTGAGGCCCGGTATCGCCAACAA
TCGCACGCACGTGAATGCTGATGCCTGTGTGTTGCATTGTGCTGTTTGCT
GCTGCGCGCAGGCGGTACCTGCCGGAACGCTTGGAAGACAACAGTCAGGC
AAGTTGCGCTGCTTCCACCATCTGCAGCCTTGTGGCATGTCACGGCTTGC
TTCAAACCATCTCGCATCGTTAGTGCCTGCACGAGTAGCCCAAGGAAGTC
ATGTAACCAGAGACCCGAACTGCATTGTGTTTTATTTTACCAGTATGCGT
TACTAGACACTCTCAGCACCAGGCGTGCAGGCAGTTGCGTGGCGACGACC
GCGTGTACTGAATACATGACCGTTCGGTTGTGCCAGTGCAATTCACGCGC
TGTGCCTCTTAAGTGCAGATCGGAGCCCAAATGCGTACCGATCATGCGTA
TCGCAACGCTGCTGGCAGCCATGTGCACCTGCAGTGCGCAGCATCCTGCT
GAAGCTACCTACTTTCTCTCAACCTCACACTTCGTTTGCCGGGCCCCCCC
CGCGCCCCCCCACCCCCACCCCCCCCACCCCCTCTCTCTACAGACACCCG
CAGATGTGATACGAGTGTCATTTACGGACCAGAGCCTGGGCCTACGCTTC
AAGCCAAGCCCGCTGCACGGTCCCACCGCCACGGAGATTGCCGGGTTTGC
GCGCGCTCCCGACGGCACGGAGCGTGTAGCGGAAGCGTGTGGCCAAGTGG
CGCCTGGTCAGGTGCGTGGCAGATGCGTCAGAGGGTGTTTGTGAACATGA
AGTTTGTATGAACCCTGTGAGAACCATGTGTGAACTCTTGCGCGCTCGCG
GCGGCACGGAGAGAGATAGCTGACGCGTGCGGCCAAGTGGCGTCTGGTCA
GGTGCGTGTCTCACGCGGCAGAGGGTATTTGTGATCGTGAACTCTGTGTG
CTAGTGGACTCTGTGCAAATTTTGTGGCTTGCCGTGTCATCCAGTCTCAG
TGGTGGGGCGATGAGTGACTCGAGGCTGTATTGCGCACAGCTCACGTACG
TGGTCACCTTGTAATCTACTTCAACAGCGGCGGTGTAGACGCGATCATGA
CCCTTGCAGACTGTTCCACCTCCACTCTTGGGATTGGCAGTGGTTGATCA
CAAGTATGTGGGTGTCACATGCTAGGGTCAGGGTTATCAGTGTAGCACAA
GTAGCAATATAGCGCAAGTACGAAGGAGGTTTTGCATCTGATTAAGGGTC
AGGGCTCATAGTGATGACGTAGAGCGATATCTTGTTCACAACAATGCAGC
GGCGACTTTTACTGAGCAGCTGTGCATGGCCCACTGCAAGGCTTGCGTAC
CTGAAAATATGTGGCATGTTTGTGGCCTGTTTGACACATGCCGAGGTTTG
TAGATCAGTGTGGGCAGCGGCGCATGGCCAGCAATAAGCAGCAGCAGCCT
CTTGCACTTGTCTATTCAGAGGCCATGCTTGAGAGGCCATGCTTGAGCAG
AGATGTCACTGCGTCATGATCAAACATTCGCTTTACCAGAACATGTTGTT
TGCTCTGTCCTGAAGATTTGTGTGGGGGCTTCATGCGGACGTTCATCGTG
TGTCTGGCTACATTACAGTACTACATGTGGTCATCTTGAAACACTTGTGG
TTGTAGTTACCATAAACTTTTCATTTGGATCCGTTCGCCATCATGTTATC
TGCCAGGCCCCAATTGCGTGTTCACCAAAGCTTTGCGCATGCCATTTTCA
CTTGATGTTGCAGGTTCTCTGGGCCATCAACGGCAACAGGGTGCTGGGAG
TGGCATTTCAACAAGTCGTCCAGCAGCTCAAGGGCCTACCAAGGCCTATC
GAGGTTAGTATAACTGATACGTGTACGTATATTCTTTGTTCTACTACAGC
GCCATATGCCTTTTGATGATGTCTCTCGGCTTGCATTAAGAGATTTGACA
GCAAGACATTGATTCCAATTTCAACAGGGCGCCACATAGTCTAGAAGTAC
TTTGCAGCAGGTCATTCGGCTTCTTGCGTCCATGTAGGCGGAGCACACCA
CGGTGTTGGAAGAGGGCGTAACTGCGCCTCCCATGCCATTTATTAAAAAT
TAATGTAATTTGTCCATAATTTGTCCACAGCAGCGCGCCACTTACACTCC
GCCAGCTATACCTGAGCGCGGCCCCGCGCCGTACTGTTGCCGCCTCCGCC
GTTGCTGCTGCAGCAATCTTAGCTCGTGATTTACTCGTGATCAACAATAT
GTAGGTGTGTACGCCTTTGCCTTCTCCTTGGCACCAATTCTTGCCCGCCC
AGCAGCGCTCCGCAGCAACTTCACATTCAACTGCATGTCCCCCCTTCGGT
CACCATACCCGCCGTTGCATCGCCTCGGCCATCACCAGTGACTTCGCCGC
CTCACACGCGTCGTCACCATTGCCGTCGCTGAGCGCTGCTGCAGTTTGCG
CTGCTGGACGTCCCCGATGTCCACGTGGAGTTCACAGCGCCGCCCCTGGA
CCTGCGGCTGCAGTACATGCAGGGGCACATTGTGGTCATCGACATTGTCA
AAGTGGAGTCCCCGCTCTGCGAGAAGCTGCAGGTGAGCGAGCGCGCGTCA
AATCTGCTGCCCTTGAACACTCTAGAAACCTATAGCGTACGTCACAGCAT
GGTGTATAGTCTTCATGGCGTAAAGTCTTCATGGCGTGCGAACTGCTGCC
GCGTCTGCGTGCGCAGCAGTGCCACATGCTCCTCGCCGTCACCAATCTGT
CGCTGCCGTCGCCGCATCACCAGTACGCGTGCAAGCAAGCCTCACAATCA
GCGCTCACCACCGCCGATCTGCGCATCGGCGGTCTGTGCGCGCCGGCGCT
GTGCGCTGAGGGGTTGTCGATATCACGCGTCTCGATACCTGTACGCCACT
GGGTGTCATACTGAGTGCCGTGCAGGTACCGAGATGCGTCGTATCGTACT
GCACTGGGTGTCGTACTGAGTGTCGTGCAGCCATCGAGATGCGTTGCATC
GACAACACCTGGGCGCACACCGCCCCATGTAGCGTCCGCCGTTCTGATGA
GGAATCGCCGTTGCCGCCCAAGCGTCCGCCATTCCTGAACCCTAGCCCTA
ACCGCAAGAGGCATCGCCGCCGCCGCGTCTGCACACGCGCAGGAGGGCCA
TGTGCTGCTGACGGTCAACGGCCTGTCGCTGCCGTCGCCGCACGGCAAGT
ACGACAAGGACGTGGCGATGCTCAGCGCGCCCACCATGTACCCCCTCAAG
CTGCGCTTTGCACGCGACAACAGTGCCGCCACAGGCGCTACGCCCCCGGG
CTCGCCGGGCAGCGACAATGGTGATGCTGCTGCGGCGACGGCGGCGGCGG
CGGCAGCTGCGGATGGGTATATGGGGTCCGGCTACGTCACGTCGTACAAG
AGGTGGGGGCTGTGACTGTTTCGCGCGCTCGCGCACAGAGGTAGCGCATG
GCCTTCAGTGTGAAGTTTGAGGTGGAAGTGCATGGACGTGTGCAGCGCGG
GCAGCGCATTGGTAAACGTGAAGTGGCTGAATCCAGCAGGACTTGTTATT
GTTCCATTTTCCCACTCGAGGACTTCGATTGCTCCGAGGCAGCAGTTTGA
TGCGGCGTGTTTCGCTTGGCACGCACTTGACGCAAGTGATTTTCAAGTAT
GCTTGAGCATCTCTGGTGCGTCACCATGGACAGCACTCGGATAGGCTTAT
TTGTTAATGTACAAGAAGCAGGCATACAGGAGGCTGGCACCCTGCTGCTC
GGTTGAACCAGCAACAGCACCTGGTTTCAGCTGCTTTGATGAGTGCTACA
TAGTTTTCGGGTGTAGCTGTACTGTGCGCAGACTTGAGCAACAGGTTTGT
GATGTTGCTTTAATTTCTGTCTTGACTTGAGTTGGCAAAAGTAAAACAGC
TGGCAGGTGCAGGGTAAGACCTTCTTGCTGTGCAAGGCTGTACTTGTGCT
TTACCGGCTGTGATTCTGTGGAAGTGAATTTATGGCAATGGTGCTGGGTT
ACGACACCTGCAAGTGCTGCCGAGCAGGATAATGGCAACACATTGGTAGC
ATTCGTTGTGACCTTTCAAGATCTTTGTCTCAGCTGTCATCACAATTCTT
CTACCTCTTGCGTAACGCACAGATCCATGGGCCGAGCGGTGGAGGTGACG
GTTGCAGATCCTGAAGACATGGCAATGGCATTTGAGAAGGGCAAGGATGG
GCGCCCGCGCATCAAAGCACTTTCCCTGGTGGACGGGCCCGCACGCCACA
GCAATCGAGTGCAGGTACGTGCGTCAATATGTTGGCCATGAGGCTGTAGC
AACTGACCGCCAGTTAGTATGATGCCGTGCAGATGCTGGTCGACGCTTTC
TGCGTAGCCCGAATTGCAGGTGCTGTATGCATGCGGTGATGTAACGTAGG
CATCACGAATAGTGCTCCTTGTTGTTTCCAGGTGCGCACAACTGAGCGCT
GCTTCCACGTCCCTCAAACAGAATATTCACTGCTGAACTTTGTGCTTCCC
AGTACTTTACCTGACTTGCATTTTCTCAACATGCACCTCTGCATGTGACA
TGTCACCATACATACTGACGCCATGTGCCTCACACTTTGCGGTTGAACTC
CCTATGTCAGGTCGGCATGGTTCTCATGGCAATCAACGGCGTGCCGCTGA
GCAAGAAGGCCAACACGTGCGCATCGTGCCGCCAGTTGCTAGCGGCAACA
TCGTATCCGGCGACCATTACATTCCGCAACATGTCTGCCTTCCTGGCCGC
AGCACAACGCCTGTAGTGCCCCTTACGTCCGCGTTTTTGACGGTGGCGTG
GTTTGTGTTTTGCTCCATACTTGTCGTGCATGTGTCATACCATAATACAG
CGGTGTCCCCCA

Coding sequence (CDS) from alignment at Contig_84:134142..143103+

>mRNA_12102 ID=mRNA_12102|Name=jgi.p|Trimin1|351239|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2100bp|location=Sequence derived from alignment at Contig_84:134142..143103+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCGTCACCGCAGGAGTACGTCTGCCGCAGCCTCAAGGACACGCT
CGACGAGAACGCGTCCGAGCTCCTGGGCGCCGTCAATGGCTTTGCGGCGG
GGTCGTGGCCGCTGCTGCTGAGCGCTGCCAAACTCGACGCGGCGCGCCTG
CCGCCTGCAAGCGCCGCGGAGGAGGCGGTCGCGCGTGGCGAGCGCGCCGC
AGCGCCTAAAAGCGGCGGCGCGCTGCGGCCGCCGCGGCTGCCGCCGCTGC
CACCGCTGGACGTGTTTGAGGGCGATGGCCAGGAGGCAATGGCGCGCAGC
GAGCGCGCTGCGGCCGCCGCCGCTGCCGCCGTGGGCGTGTCTGAGGGCGA
GGCCCAGCTGCCGCCGCTGCCGCCGCTTGATGTGTTTGAGGGCGAGGGCC
AGACAGCGCCGCTGCCGCCGCTGGACGTGTTTGAGGGCGAGGGCCGGGTG
CGGAAGCCGCCGCTGCCGTCGCTCGACGTGTTTGAAGGCGAGGGACAGGT
GCGTGATTGCGAGTTACCCATGCGGCTGCCGCCGCTGCCGCCGCTCAACG
TGTTTGAGGGCGATGGCCAGGGGCGACCGCCCACGCGCAGTCGTGTGCTG
CTGCTGCGGCTGCTGCTGGAGTTCAGCTTGGTGCTTGAGGAGCAAGGGCC
TTTGGGCATGCAAATAGACATTGTGGAACTACCCGGGGGCGGCAGGCGTC
TGCTGGTGGCAGGCCTGGTGCCGGGGGCTCAGGTGAACACAAACTTCAGC
TATAACTTCAAGCTCAGGAACAGAAAATATGCGGTAGAGCAGGGAATGCT
GCTGGGGGCGGGCCTGGTGCCGGGGGCCGAGGCGGAGCGTCAGCTAGGCT
CCGCTGCCTCAGAGGTGGTCGGCAGCGAGCTCGTGGGGCTTGGGTCAGAG
CGGCTCGACGACAGGCCGCTTGAGCACTGCCTCACGCTGCTGCGCGACGC
GCCGCGGCCGGTCAAGATCGTCACACCCGCAGATGTGATACGAGTGTCAT
TTACGGACCAGAGCCTGGGCCTACGCTTCAAGCCAAGCCCGCTGCACGGT
CCCACCGCCACGGAGATTGCCGGGTTTGCGCGCGCTCCCGACGGCACGGA
GCGTGTAGCGGAAGCGTGTGGCCAAGTGGCGCCTGGTCAGGTTCTCTGGG
CCATCAACGGCAACAGGGTGCTGGGAGTGGCATTTCAACAAGTCGTCCAG
CAGCTCAAGGGCCTACCAAGGCCTATCGAGTTTGCGCTGCTGGACGTCCC
CGATGTCCACGTGGAGTTCACAGCGCCGCCCCTGGACCTGCGGCTGCAGT
ACATGCAGGGGCACATTGTGGTCATCGACATTGTCAAAGTGGAGTCCCCG
CTCTGCGAGAAGCTGCAGCAGTGCCACATGCTCCTCGCCGTCACCAATCT
GTCGCTGCCGTCGCCGCATCACCAGTACGCGTGCAAGCAAGCCTCACAAT
CAGCGCTCACCACCGCCGATCTGCGCATCGGCGGTCTGTGCGCGCCGGCG
CTGTGCGCTGAGGGGTTGTCGATATCACGCGTCTCGATACCTGAGGGCCA
TGTGCTGCTGACGGTCAACGGCCTGTCGCTGCCGTCGCCGCACGGCAAGT
ACGACAAGGACGTGGCGATGCTCAGCGCGCCCACCATGTACCCCCTCAAG
CTGCGCTTTGCACGCGACAACAGTGCCGCCACAGGCGCTACGCCCCCGGG
CTCGCCGGGCAGCGACAATGGTGATGCTGCTGCGGCGACGGCGGCGGCGG
CGGCAGCTGCGGATGGGTATATGGGGTCCGGCTACGTCACGTCGTACAAG
AGATCCATGGGCCGAGCGGTGGAGGTGACGGTTGCAGATCCTGAAGACAT
GGCAATGGCATTTGAGAAGGGCAAGGATGGGCGCCCGCGCATCAAAGCAC
TTTCCCTGGTGGACGGGCCCGCACGCCACAGCAATCGAGTGCAGGTCGGC
ATGGTTCTCATGGCAATCAACGGCGTGCCGCTGAGCAAGAAGGCCAACAC
GTGCGCATCGTGCCGCCAGTTGCTAGCGGCAACATCGTATCCGGCGACCA
TTACATTCCGCAACATGTCTGCCTTCCTGGCCGCAGCACAACGCCTGTAG