Trimin1|351239|estExt_Genemark1.C_Ctg_840023 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351239
Unique NameTrimin1|351239|estExt_Genemark1.C_Ctg_840023
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length700
Homology
BLAST of jgi.p|Trimin1|351239 vs. uniprot
Match: A0A835YT37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT37_9STRA)

HSP 1 Score: 1183 bits (3061), Expect = 0.000e+0
Identity = 699/699 (100.00%), Postives = 699/699 (100.00%), Query Frame = 0
Query:    1 MRASPQEYVCRSLKDTLDENASELLGAVNGFAAGSWPLLLSAAKLDAARLPPASAAEEAVARGERAAAPKSGGALRPPRLPPLPPLDVFEGDGQEAMARSERAAAAAAAAVGVSEGEAQXXXXXXXXXXXXXXQTAPXXXXXXXXXXXRVRKPXXXXXXXXXXXXXXRDCELPMRLPXXXXXXXXXXXXXGRPPTRSRVLLLRLLLEFSLVLEEQGPLGMQIDIVELPGGGRRLLVAGLVPGAQVNTNFSYNFKLRNRKYAVEQGMLLGAGLVPGAEAERQLGSAASEVVGSELVGLGSERLDDRPLEHCLTLLRDAPRPVKIVTPADVIRVSFTDQSLGLRFKPSPLHGPTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQQLKGLPRPIEFALLDVPDVHVEFTAPPLDLRLQYMQGHIVVIDIVKVESPLCEKLQQCHMLLAVTNLSLPSPHHQYACKQASQSALTTADLRIGGLCAPALCAEGLSISRVSIPEGHVLLTVNGLSLPSPHGKYDKDVAMLSAPTMYPLKLRFARDNSAATGATPPGSXXXXXXXXXXXXXXXXXXADGYMGSGYVTSYKRSMGRAVEVTVADPEDMAMAFEKGKDGRPRIKALSLVDGPARHSNRVQVGMVLMAINGVPLSKKANTCASCRQLLAATSYPATITFRNMSAFLAAAQRL 699
            MRASPQEYVCRSLKDTLDENASELLGAVNGFAAGSWPLLLSAAKLDAARLPPASAAEEAVARGERAAAPKSGGALRPPRLPPLPPLDVFEGDGQEAMARSERAAAAAAAAVGVSEGEAQXXXXXXXXXXXXXXQTAPXXXXXXXXXXXRVRKPXXXXXXXXXXXXXXRDCELPMRLPXXXXXXXXXXXXXGRPPTRSRVLLLRLLLEFSLVLEEQGPLGMQIDIVELPGGGRRLLVAGLVPGAQVNTNFSYNFKLRNRKYAVEQGMLLGAGLVPGAEAERQLGSAASEVVGSELVGLGSERLDDRPLEHCLTLLRDAPRPVKIVTPADVIRVSFTDQSLGLRFKPSPLHGPTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQQLKGLPRPIEFALLDVPDVHVEFTAPPLDLRLQYMQGHIVVIDIVKVESPLCEKLQQCHMLLAVTNLSLPSPHHQYACKQASQSALTTADLRIGGLCAPALCAEGLSISRVSIPEGHVLLTVNGLSLPSPHGKYDKDVAMLSAPTMYPLKLRFARDNSAATGATPPGSXXXXXXXXXXXXXXXXXXADGYMGSGYVTSYKRSMGRAVEVTVADPEDMAMAFEKGKDGRPRIKALSLVDGPARHSNRVQVGMVLMAINGVPLSKKANTCASCRQLLAATSYPATITFRNMSAFLAAAQRL
Sbjct:    1 MRASPQEYVCRSLKDTLDENASELLGAVNGFAAGSWPLLLSAAKLDAARLPPASAAEEAVARGERAAAPKSGGALRPPRLPPLPPLDVFEGDGQEAMARSERAAAAAAAAVGVSEGEAQXXXXXXXXXXXXXXQTAPXXXXXXXXXXXRVRKPXXXXXXXXXXXXXXRDCELPMRLPXXXXXXXXXXXXXGRPPTRSRVLLLRLLLEFSLVLEEQGPLGMQIDIVELPGGGRRLLVAGLVPGAQVNTNFSYNFKLRNRKYAVEQGMLLGAGLVPGAEAERQLGSAASEVVGSELVGLGSERLDDRPLEHCLTLLRDAPRPVKIVTPADVIRVSFTDQSLGLRFKPSPLHGPTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQQLKGLPRPIEFALLDVPDVHVEFTAPPLDLRLQYMQGHIVVIDIVKVESPLCEKLQQCHMLLAVTNLSLPSPHHQYACKQASQSALTTADLRIGGLCAPALCAEGLSISRVSIPEGHVLLTVNGLSLPSPHGKYDKDVAMLSAPTMYPLKLRFARDNSAATGATPPGSXXXXXXXXXXXXXXXXXXADGYMGSGYVTSYKRSMGRAVEVTVADPEDMAMAFEKGKDGRPRIKALSLVDGPARHSNRVQVGMVLMAINGVPLSKKANTCASCRQLLAATSYPATITFRNMSAFLAAAQRL 699          
BLAST of jgi.p|Trimin1|351239 vs. uniprot
Match: D8LTI7_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI7_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 3.540e-39
Identity = 142/495 (28.69%), Postives = 217/495 (43.84%), Query Frame = 0
Query:  230 GGRRLLVAGLVPGAQVNTNFSYNFKLRNRKYAVE---QGMLLGAGLVPGAEAERQLGSAASEVVGSELVGLGSERLDDRPLEHCLTLLRDAPRPVKIV-------------------------TPADVIRVSFTDQSLGLRFKPSPLHGPTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQQLKGLPRPIEFALLDVPDVHVEFTAPPLDLRLQYMQGHIVVIDIVKVESPLCEKLQQCHMLLAVTNLSLPSPHHQYACKQASQSALTTADLRIGGLCAPALCAEGLSISRVSIPEGHVLLTVNGLSLPSPHGKYDKDVAMLSAPTMYPLKLRFARDNSAATGATPPGSXXXXXXXXXXXXXXXXXXADGYMGS-GYVTSYKRSMGRAV-EVTVADPEDMAMAFEKGKDGRPRIKALSLVDGPARHSNRVQVGMVLMAINGVPLSKKANTCAS-CRQLLAATSYPATITFRNMSAFL 693
            GG    +AGL  GA        N +     + V+   + +L   G V     +   G    EV G+EL+ +G   ++       L LLR +PRPV+++                          P  ++  +F  +SLG++F+ S   G   T + GF+R  +G  R AEA G + PGQ+L+++NG RV+G  F  +V+ L+ +PRP+ F L    DV V   APPL+L L+ + G + V    +V +                                                  AL A G      ++  G  L++VNG+ LP   G Y KD A+L AP M+P++LR  R  +AA  A                       A    GS   +  Y+ ++  +  EV  A PED+++  E+GKDGRP + ++  V G       +Q GMVL+AI+G P++       S CR+ L A +YP T+TFR+M  +L
Sbjct: 1088 GGVMASIAGLAGGATGAAAVVVNHRALEEAFVVQGEGRRVLNLKGFV-----QEDFGVVFDEV-GAELLSVGGASVEGLEGTKVLGLLRSSPRPVQMMFRCYVPDVAEAVAASALGKDAEALPPPDGLVTATFKQRSLGVKFRASSTLGTRVTTVGGFSRDLEGRMREAEASGLLVPGQLLYSVNGRRVIGQEFADLVRGLQKVPRPVTFGLAPSIDVRVTVDAPPLELELRRVSGRVTVTGFCEVPT--------------------------------------------------ALEASG------AVQPGDTLISVNGIPLPGA-GCYRKDAALLEAPGMFPMRLRIRRAGAAAEDAD------GGDAEGFVDPARGGRGAQALEGSLSRLKQYQNAVSASPSEVLAATPEDLSLKVEEGKDGRPVVLSMPYVRGKLEKGGVIQPGMVLVAIDGAPIAGGHFASVSDCRRSLDAVAYPCTLTFRDMPKWL 1513          
BLAST of jgi.p|Trimin1|351239 vs. uniprot
Match: A0A7S2WE33_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WE33_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.860e-9
Identity = 84/307 (27.36%), Postives = 118/307 (38.44%), Query Frame = 0
Query:  210 LVLEEQGPLGMQIDIVELPGGGRRLLVAGLVPGAQVNTNFSYNFKLRNRKYAVEQGMLLGAGLV-PGAEAERQLGSAASEVVGSELVGLGSERLDDRPLEHCLTLLRDAPRP--VKIVTPADVIR--------------------------VSFTDQSLGLRFKPSPLHGPTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQQLKGLPRPIE------FALLDVPDVHVEFTAPPLDLRLQYMQG----HIVVIDIVKVE---SPL--CEKLQQCHMLLAVTNLSLPSP 472
            LVL ++GPLG+ +DI                                 R Y    G + G   V P  E E+  G  A    G+ LVG+    L ++ +   L L++   RP  +  V PA  +                           V F   +LGLR   S L  P   E+AGFARAP+G+   AEAC  + PG +L  +N  ++  +   QV   L+      E       A L  P V V+F  PPLD+ L  +      H+ VI   +      P+    KL+    LLA   L+ P P
Sbjct:  269 LVLPDEGPLGLHLDIST------------------------------KRSYVRFSGPVEGGQAVRPVQELEKDFGPLA----GAFLVGVDDVNLSNKSVAEALVLIKQPTRPKIMTFVLPAPKLESDQPGGTSSQHTQPSPQGGTDLSPIFVEFRSTTLGLRLNASRLI-PELVEVAGFARAPNGSLLPAEACQVLEPGMLLLGVNNVKIWKMPLSQVAALLRDAALATEKGTTVRLAFLPSPLVTVDFKEPPLDMVLAQVPAPGGRHLTVITGFQPSHHPGPMERSGKLRPGDALLAANGLTFPGP 540          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351239 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YT37_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LTI7_ECTSI3.540e-3928.69Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2WE33_9STRA9.860e-927.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036034PDZ superfamilyGENE3D2.30.42.10coord: 334..416
e-value: 5.6E-5
score: 25.0
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 369..419

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:134142..143007 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351239mRNA_12102Tribonema minus UTEX_B_3156 mRNAContig_84 134142..143103 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351239|estExt_Genemark1.C_Ctg_840023 ID=Trimin1|351239|estExt_Genemark1.C_Ctg_840023|Name=jgi.p|Trimin1|351239|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=700bp
MRASPQEYVCRSLKDTLDENASELLGAVNGFAAGSWPLLLSAAKLDAARL
PPASAAEEAVARGERAAAPKSGGALRPPRLPPLPPLDVFEGDGQEAMARS
ERAAAAAAAAVGVSEGEAQLPPLPPLDVFEGEGQTAPLPPLDVFEGEGRV
RKPPLPSLDVFEGEGQVRDCELPMRLPPLPPLNVFEGDGQGRPPTRSRVL
LLRLLLEFSLVLEEQGPLGMQIDIVELPGGGRRLLVAGLVPGAQVNTNFS
YNFKLRNRKYAVEQGMLLGAGLVPGAEAERQLGSAASEVVGSELVGLGSE
RLDDRPLEHCLTLLRDAPRPVKIVTPADVIRVSFTDQSLGLRFKPSPLHG
PTATEIAGFARAPDGTERVAEACGQVAPGQVLWAINGNRVLGVAFQQVVQ
QLKGLPRPIEFALLDVPDVHVEFTAPPLDLRLQYMQGHIVVIDIVKVESP
LCEKLQQCHMLLAVTNLSLPSPHHQYACKQASQSALTTADLRIGGLCAPA
LCAEGLSISRVSIPEGHVLLTVNGLSLPSPHGKYDKDVAMLSAPTMYPLK
LRFARDNSAATGATPPGSPGSDNGDAAAATAAAAAAADGYMGSGYVTSYK
RSMGRAVEVTVADPEDMAMAFEKGKDGRPRIKALSLVDGPARHSNRVQVG
MVLMAINGVPLSKKANTCASCRQLLAATSYPATITFRNMSAFLAAAQRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf