mRNA_12063 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A836C8G7_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G7_9STRA) HSP 1 Score: 490 bits (1262), Expect = 4.030e-175 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1 Query: 1 MCSEFTLQTLLPLNHAQVKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLHS 747 MCSEFTLQTLLPLNHAQVKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLHS Sbjct: 1 MCSEFTLQTLLPLNHAQVKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLHS 249
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE) HSP 1 Score: 250 bits (639), Expect = 1.910e-79 Identity = 127/229 (55.46%), Postives = 163/229 (71.18%), Query Frame = 1 Query: 58 SLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHIS----PIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTM 732 SLYRGL SPV+GYG +FA+SFS+ G A R+L R A ++ E +AGAWAG + AP RQVFERVKGVMQVR G ++PYSWSGAC+VDLVR EGV MGL RGMG+ +RE QF +YYP+Y++AK +LP D + P+ + LAGG+AG V WLPP Y +DV+KT++QTA PG Y+ + D KT+ EG LFRGLG +++RAFP+H +F GYE T+ Sbjct: 58 SLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDELTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYLLPPDRTSTAVPEPMLLALAGGLAGCVMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 286
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: W7TE76_9STRA (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE76_9STRA) HSP 1 Score: 238 bits (606), Expect = 5.180e-75 Identity = 129/256 (50.39%), Postives = 166/256 (64.84%), Query Frame = 1 Query: 52 VKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGG--KAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAIL----------------------PADGHISPIHMLL-AGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLH 744 + SLYRGL SP G+GV FA+SF+ GQ R+ R D + ++ EMT +GAWAG +Q+PARQ+FER+K VMQVR AGG K PY WSG CLV LVR EG+ GLFRG+ + +REVPQFA+YYP Y++ RA+ P+ P H+LL AGG+AGTVQWLPP Y +DVLK+++Q+A PG Y ++ D A+K+ EG FRGL +L+RAFPL+A IF GYE T+A LH Sbjct: 7 ISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKR---ELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSXNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALH 259
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: D7FLY9_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI) HSP 1 Score: 223 bits (568), Expect = 1.980e-69 Identity = 123/242 (50.83%), Postives = 156/242 (64.46%), Query Frame = 1 Query: 43 HAQVKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPAS----VAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDV-----AKRAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHL 741 H + S YRGL SPV GYG +FA+SFS+ G A R+L+ S + E + AG +AGA+ +P R VF+RVK VMQVR G G APYSWSGAC DLVR EGV GLFRG+ S +RE+ Q A+YYP+Y+V A+R+ P +LAGGIAG WLPP+Y +DV+KT++Q+A PG Y D RKTV +EGT LFRGLG S++RAFP+H +F GYE T+ L Sbjct: 4 HEGLMSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQRXXXXXXXXXXSGEVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLLARRSTSGKSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLL 245
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: D7FM07_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM07_ECTSI) HSP 1 Score: 217 bits (553), Expect = 1.840e-67 Identity = 109/199 (54.77%), Postives = 142/199 (71.36%), Query Frame = 1 Query: 148 LRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHIS----PIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTM 732 LR R+ +A + ++ E +AGAWAG + AP RQVFERVKGVMQVR G ++PYSWSGAC+VDLVR EG+ MGL RGMG+ +RE QF +YYP+Y++AK LP D + PI + LAGG+AG V WLPPIY +DV+KT++QTA PG Y+ + D KT+ EG LFRGLG +++RAFP+H +F GYE T+ Sbjct: 14 LRRREAKATD-KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 211
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: K8Z8A3_NANGC (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8A3_NANGC) HSP 1 Score: 191 bits (485), Expect = 1.520e-56 Identity = 111/235 (47.23%), Postives = 144/235 (61.28%), Query Frame = 1 Query: 52 VKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGG--KAPYSWSGACLVDL-VRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPIHMLL-AGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLH 744 + SLYRGL SP G+GV FA+SF+ GQ R+ R D + ++ EMT +GAWAG +Q+PARQ+FER+K VMQVR AGG K PY WSG CL ++ VR M GS ++ R P+ P H+LL AGG+AGTVQWLPP Y +DVLK+++Q+A PG Y ++ D A+K+ EG FRGL +L+RAFPL+A IF GYE T+A LH Sbjct: 57 ISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKR---ELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLYEMNVRALQKMMAASNASGSSSNES-----------NIVHRK--PSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALH 275
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A4D9D591_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D591_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.820e-49 Identity = 92/182 (50.55%), Postives = 116/182 (63.74%), Query Frame = 1 Query: 274 MQVRNGAGG--KAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAIL----------------------PADGHISPIHMLL-AGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLH 744 MQVR AGG KAPY WSG CLV LVR EG+ GLFRG+ + +REVPQFA+YYP Y++ RA+ P+ P H+LL AGG+AGTVQWLPP Y +DVLK+++Q+A PG Y ++ D A+K+ EG FRGL +L+RAFPL+A IF GYE T+A LH Sbjct: 1 MQVRKAAGGVDKAPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSHEKNRVNRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALH 182
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A482SEK8_9ARCH (MC/SLC25 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEK8_9ARCH) HSP 1 Score: 161 bits (407), Expect = 8.080e-46 Identity = 77/156 (49.36%), Postives = 105/156 (67.31%), Query Frame = 1 Query: 193 AEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFR 660 A++++AGA+ G +Q+PARQ+ ER+K VMQ+ +GGK+PYSWSGAC LV+TEGV++GLF+G S +RE+PQF++YYP Y+ AK LAGG AG VQWLPPIY DV+K+++QTA G Y + D AR+ G+ FR Sbjct: 47 ADLSMAGAYTGVLQSPARQLVERIKSVMQIHERSGGKSPYSWSGACAYHLVKTEGVRVGLFQGFSSVLLREIPQFSVYYPCYEFAKSIYTEKIPDNPKTVNFLAGGTAGVVQWLPPIYCFDVIKSRMQTAPKGAYSGLMDCARQLYQAHGSSVFFR 202
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A7S1G657_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G657_9STRA) HSP 1 Score: 160 bits (406), Expect = 4.750e-44 Identity = 95/234 (40.60%), Postives = 135/234 (57.69%), Query Frame = 1 Query: 58 SLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANA---PASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPI---HMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHL 741 +LYRG+++P+ GYG + ++ S G LR R+ AA S+ E AGA AG V R ERVK VMQVR G + S CLV +RTEG+ + F + +RE+ Q Y+PA+++ KRA+ PA G + + +L+AGG+AG QWLPP+Y IDV+K++++ G+ + R +VA EG L RG+GP++VRAFP+HATI EL A L Sbjct: 102 ALYRGMSAPIAGYGAINSLLLSTYGMTAVVLRRRNAEAAGGVDRELSMEESMAAGAVAGVVSTVLRAPVERVKAVMQVRRNPDGTKVFRNSWRCLVGTMRTEGL-LSPFAAGRATLLRELFQGVAYFPAFEITKRALTPAGGSSNDLDFWRLLIAGGVAGITQWLPPMYCIDVVKSRMEVPPAGSTPGVLGVLRASVAKEGGMVLLRGMGPAMVRAFPMHATILTTNELMTAWL 334
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A096PA99_OSTTA (Mitochondrial substrate/solute carrier n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PA99_OSTTA) HSP 1 Score: 153 bits (387), Expect = 1.640e-41 Identity = 102/233 (43.78%), Postives = 134/233 (57.51%), Query Frame = 1 Query: 55 KSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAIL-----PADGHISPIH-----MLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYE 723 K LYRG+ +P++ YG + A++FSAN A +LR G A A AS L GA+AG V + R ER+K V QV + G+ Y + + + LV+ GV GLF G G+ RE+PQ A+Y+ YD K A L AD H +P ++LAGG AG QWL Y +DV K++IQ A P TY + D A K+V EG LFRGL +L+RAFPLHA+IFA E Sbjct: 76 KGLYRGITAPMMAYGAINAVAFSANAGAKDFLRTTLG--AEAAASAPAGALTGAFAGLVSSFVRGPAERLKTVQQVIDCDSGR--YRSATSTALTLVKEHGVVRGLFTGTGATIAREIPQCAVYFLTYDKVKSACLRALCGDADAHDAPAAARAGAIVLAGGSAGAFQWLLT-YPLDVTKSRIQAAPPHTYSGVIDCAVKSVVKEGPLVLFRGLNMALLRAFPLHASIFASCE 303 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12063 ID=mRNA_12063|Name=jgi.p|Trimin1|172452|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=750bp|location=Sequence derived from alignment at Contig_93:480114..481706+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTGCAGTGAATTTACTTTGCAGACGTTGTTGCCTCTCAACCATGCGCAback to top protein sequence of jgi.p|Trimin1|172452 >Trimin1|172452|e_gw1.93.90.1 ID=Trimin1|172452|e_gw1.93.90.1|Name=jgi.p|Trimin1|172452|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=250bp MCSEFTLQTLLPLNHAQVKSLYRGLASPVLGYGVLFAMSFSANGQALRYLback to top mRNA from alignment at Contig_93:480114..481706+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12063 ID=mRNA_12063|Name=jgi.p|Trimin1|172452|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1593bp|location=Sequence derived from alignment at Contig_93:480114..481706+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_93:480114..481706+ >mRNA_12063 ID=mRNA_12063|Name=jgi.p|Trimin1|172452|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=750bp|location=Sequence derived from alignment at Contig_93:480114..481706+ (Tribonema minus UTEX_B_3156 )back to top |