mRNA_12063 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|172452
Unique NamemRNA_12063
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A836C8G7_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G7_9STRA)

HSP 1 Score: 490 bits (1262), Expect = 4.030e-175
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1
Query:    1 MCSEFTLQTLLPLNHAQVKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLHS 747
            MCSEFTLQTLLPLNHAQVKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLHS
Sbjct:    1 MCSEFTLQTLLPLNHAQVKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLHS 249          
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.910e-79
Identity = 127/229 (55.46%), Postives = 163/229 (71.18%), Query Frame = 1
Query:   58 SLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHIS----PIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTM 732
            SLYRGL SPV+GYG +FA+SFS+ G A R+L  R    A    ++ E  +AGAWAG + AP RQVFERVKGVMQVR G   ++PYSWSGAC+VDLVR EGV MGL RGMG+  +RE  QF +YYP+Y++AK  +LP D   +    P+ + LAGG+AG V WLPP Y +DV+KT++QTA PG Y+ + D   KT+  EG   LFRGLG +++RAFP+H  +F GYE T+
Sbjct:   58 SLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREAKATDELTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYLLPPDRTSTAVPEPMLLALAGGLAGCVMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 286          
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: W7TE76_9STRA (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE76_9STRA)

HSP 1 Score: 238 bits (606), Expect = 5.180e-75
Identity = 129/256 (50.39%), Postives = 166/256 (64.84%), Query Frame = 1
Query:   52 VKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGG--KAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAIL----------------------PADGHISPIHMLL-AGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLH 744
            + SLYRGL SP  G+GV FA+SF+  GQ  R+ R  D +      ++ EMT +GAWAG +Q+PARQ+FER+K VMQVR  AGG  K PY WSG CLV LVR EG+  GLFRG+ +  +REVPQFA+YYP Y++  RA+                       P+     P H+LL AGG+AGTVQWLPP Y +DVLK+++Q+A PG Y ++ D A+K+   EG    FRGL  +L+RAFPL+A IF GYE T+A LH
Sbjct:    7 ISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKR---ELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSXNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALH 259          
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: D7FLY9_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.980e-69
Identity = 123/242 (50.83%), Postives = 156/242 (64.46%), Query Frame = 1
Query:   43 HAQVKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPAS----VAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDV-----AKRAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHL 741
            H  + S YRGL SPV GYG +FA+SFS+ G A R+L+           S    + E + AG +AGA+ +P R VF+RVK VMQVR G G  APYSWSGAC  DLVR EGV  GLFRG+ S  +RE+ Q A+YYP+Y+V     A+R+         P   +LAGGIAG   WLPP+Y +DV+KT++Q+A PG Y    D  RKTV +EGT  LFRGLG S++RAFP+H  +F GYE T+  L
Sbjct:    4 HEGLMSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQRXXXXXXXXXXSGEVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLLARRSTSGKSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLL 245          
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: D7FM07_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM07_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 1.840e-67
Identity = 109/199 (54.77%), Postives = 142/199 (71.36%), Query Frame = 1
Query:  148 LRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHIS----PIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTM 732
            LR R+ +A +   ++ E  +AGAWAG + AP RQVFERVKGVMQVR G   ++PYSWSGAC+VDLVR EG+ MGL RGMG+  +RE  QF +YYP+Y++AK   LP D   +    PI + LAGG+AG V WLPPIY +DV+KT++QTA PG Y+ + D   KT+  EG   LFRGLG +++RAFP+H  +F GYE T+
Sbjct:   14 LRRREAKATD-KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTI 211          
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: K8Z8A3_NANGC (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8A3_NANGC)

HSP 1 Score: 191 bits (485), Expect = 1.520e-56
Identity = 111/235 (47.23%), Postives = 144/235 (61.28%), Query Frame = 1
Query:   52 VKSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGG--KAPYSWSGACLVDL-VRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPIHMLL-AGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLH 744
            + SLYRGL SP  G+GV FA+SF+  GQ  R+ R  D +      ++ EMT +GAWAG +Q+PARQ+FER+K VMQVR  AGG  K PY WSG CL ++ VR     M      GS                ++  R   P+     P H+LL AGG+AGTVQWLPP Y +DVLK+++Q+A PG Y ++ D A+K+   EG    FRGL  +L+RAFPL+A IF GYE T+A LH
Sbjct:   57 ISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKR---ELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLYEMNVRALQKMMAASNASGSSSNES-----------NIVHRK--PSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALH 275          
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A4D9D591_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D591_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.820e-49
Identity = 92/182 (50.55%), Postives = 116/182 (63.74%), Query Frame = 1
Query:  274 MQVRNGAGG--KAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAIL----------------------PADGHISPIHMLL-AGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLH 744
            MQVR  AGG  KAPY WSG CLV LVR EG+  GLFRG+ +  +REVPQFA+YYP Y++  RA+                       P+     P H+LL AGG+AGTVQWLPP Y +DVLK+++Q+A PG Y ++ D A+K+   EG    FRGL  +L+RAFPL+A IF GYE T+A LH
Sbjct:    1 MQVRKAAGGVDKAPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSHEKNRVNRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALH 182          
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A482SEK8_9ARCH (MC/SLC25 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEK8_9ARCH)

HSP 1 Score: 161 bits (407), Expect = 8.080e-46
Identity = 77/156 (49.36%), Postives = 105/156 (67.31%), Query Frame = 1
Query:  193 AEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFR 660
            A++++AGA+ G +Q+PARQ+ ER+K VMQ+   +GGK+PYSWSGAC   LV+TEGV++GLF+G  S  +RE+PQF++YYP Y+ AK                LAGG AG VQWLPPIY  DV+K+++QTA  G Y  + D AR+     G+   FR
Sbjct:   47 ADLSMAGAYTGVLQSPARQLVERIKSVMQIHERSGGKSPYSWSGACAYHLVKTEGVRVGLFQGFSSVLLREIPQFSVYYPCYEFAKSIYTEKIPDNPKTVNFLAGGTAGVVQWLPPIYCFDVIKSRMQTAPKGAYSGLMDCARQLYQAHGSSVFFR 202          
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A7S1G657_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G657_9STRA)

HSP 1 Score: 160 bits (406), Expect = 4.750e-44
Identity = 95/234 (40.60%), Postives = 135/234 (57.69%), Query Frame = 1
Query:   58 SLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANA---PASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPI---HMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHL 741
            +LYRG+++P+ GYG + ++  S  G     LR R+  AA       S+ E   AGA AG V    R   ERVK VMQVR    G   +  S  CLV  +RTEG+ +  F    +  +RE+ Q   Y+PA+++ KRA+ PA G  + +    +L+AGG+AG  QWLPP+Y IDV+K++++    G+   +    R +VA EG   L RG+GP++VRAFP+HATI    EL  A L
Sbjct:  102 ALYRGMSAPIAGYGAINSLLLSTYGMTAVVLRRRNAEAAGGVDRELSMEESMAAGAVAGVVSTVLRAPVERVKAVMQVRRNPDGTKVFRNSWRCLVGTMRTEGL-LSPFAAGRATLLRELFQGVAYFPAFEITKRALTPAGGSSNDLDFWRLLIAGGVAGITQWLPPMYCIDVVKSRMEVPPAGSTPGVLGVLRASVAKEGGMVLLRGMGPAMVRAFPMHATILTTNELMTAWL 334          
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Match: A0A096PA99_OSTTA (Mitochondrial substrate/solute carrier n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PA99_OSTTA)

HSP 1 Score: 153 bits (387), Expect = 1.640e-41
Identity = 102/233 (43.78%), Postives = 134/233 (57.51%), Query Frame = 1
Query:   55 KSLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAIL-----PADGHISPIH-----MLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYE 723
            K LYRG+ +P++ YG + A++FSAN  A  +LR   G  A A AS     L GA+AG V +  R   ER+K V QV +   G+  Y  + +  + LV+  GV  GLF G G+   RE+PQ A+Y+  YD  K A L      AD H +P       ++LAGG AG  QWL   Y +DV K++IQ A P TY  + D A K+V  EG   LFRGL  +L+RAFPLHA+IFA  E
Sbjct:   76 KGLYRGITAPMMAYGAINAVAFSANAGAKDFLRTTLG--AEAAASAPAGALTGAFAGLVSSFVRGPAERLKTVQQVIDCDSGR--YRSATSTALTLVKEHGVVRGLFTGTGATIAREIPQCAVYFLTYDKVKSACLRALCGDADAHDAPAAARAGAIVLAGGSAGAFQWLLT-YPLDVTKSRIQAAPPHTYSGVIDCAVKSVVKEGPLVLFRGLNMALLRAFPLHASIFASCE 303          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172452 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8G7_9STRA4.030e-175100.00Carnitine/acylcarnitine carrier protein n=1 Tax=Tr... [more]
A0A6H5JUA4_9PHAE1.910e-7955.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TE76_9STRA5.180e-7550.39Mitochondrial carrier family n=1 Tax=Nannochlorops... [more]
D7FLY9_ECTSI1.980e-6950.83Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
D7FM07_ECTSI1.840e-6754.77Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
K8Z8A3_NANGC1.520e-5647.23Mitochondrial carrier family n=1 Tax=Nannochlorops... [more]
A0A4D9D591_9STRA1.820e-4950.55Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A482SEK8_9ARCH8.080e-4649.36MC/SLC25 family protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1G657_9STRA4.750e-4440.60Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A096PA99_OSTTA1.640e-4143.78Mitochondrial substrate/solute carrier n=2 Tax=Ost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_93contigContig_93:480114..481706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|172452|e_gw1.93.90.1
KEGG TC2.A.29.8
BRITEko00000,ko00001,ko02000
KEGG Pathwayko04714,map04714
KEGG koko:K15109
Descriptionmitochondrial transport
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0758@1|root,KOG0758@2759|Eukaryota
Evalue3.25e-70
Seed ortholog2880.D7FLY9
Hectar predicted targeting categoryother localisation
TranscriptId172774
TrackFilteredModels1
ProteinId172452
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172452gene_12063Tribonema minus UTEX_B_3156 geneContig_93 480114..481706 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12063_1exon_12063_1Tribonema minus UTEX_B_3156 exonContig_93 480114..480362 +
exon_12063_2exon_12063_2Tribonema minus UTEX_B_3156 exonContig_93 481206..481706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12063CDS_12063Tribonema minus UTEX_B_3156 CDSContig_93 480114..480362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172452Trimin1|172452|e_gw1.93.90.1Tribonema minus UTEX_B_3156 polypeptideContig_93 480114..481706 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12063 ID=mRNA_12063|Name=jgi.p|Trimin1|172452|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=750bp|location=Sequence derived from alignment at Contig_93:480114..481706+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAGTGAATTTACTTTGCAGACGTTGTTGCCTCTCAACCATGCGCA
GGTGAAATCACTCTACAGAGGCCTCGCTTCTCCGGTGCTGGGCTATGGGG
TGCTATTTGCCATGTCCTTCTCGGCGAACGGCCAAGCTCTTCGCTACCTG
CGCAACAGGGATGGACGTGCGGCAAATGCTCCTGCTTCGGTTGCGGAGAT
GACGCTGGCTGGTGCATGGGCAGGAGCTGTACAGGCCCCAGCACGGCAGG
TCTTTGAGCGCGTCAAGGGTGTGATGCAAGTGCGCAATGGCGCGGGCGGC
AAAGCGCCTTACAGCTGGTCAGGCGCGTGCTTGGTGGACCTTGTTCGCAC
AGAAGGTGTACAGATGGGGCTGTTTCGCGGCATGGGCAGTCAGTTCATTA
GAGAGGTCCCGCAGTTCGCACTATATTACCCGGCATACGATGTAGCAAAG
AGGGCCATCCTGCCTGCCGATGGGCACATCAGCCCTATACATATGCTGCT
GGCAGGTGGCATCGCTGGCACTGTGCAGTGGCTGCCGCCAATCTACAACA
TTGATGTTCTGAAGACGAAAATCCAAACGGCTGCGCCCGGCACCTACAAG
TCCATAGCCGATGCAGCAAGGAAAACTGTTGCCACAGAGGGGACAAAGGG
GCTGTTCAGAGGGCTTGGGCCATCGCTGGTGCGCGCTTTCCCCCTTCATG
CGACGATATTTGCGGGGTACGAGCTCACCATGGCTCATCTGCACAGTTGA
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protein sequence of jgi.p|Trimin1|172452

>Trimin1|172452|e_gw1.93.90.1 ID=Trimin1|172452|e_gw1.93.90.1|Name=jgi.p|Trimin1|172452|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=250bp
MCSEFTLQTLLPLNHAQVKSLYRGLASPVLGYGVLFAMSFSANGQALRYL
RNRDGRAANAPASVAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGG
KAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAK
RAILPADGHISPIHMLLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYK
SIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHLHS*
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mRNA from alignment at Contig_93:480114..481706+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12063 ID=mRNA_12063|Name=jgi.p|Trimin1|172452|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1593bp|location=Sequence derived from alignment at Contig_93:480114..481706+ (Tribonema minus UTEX_B_3156 )
ATGTGCAGTGAATTTACTTTGCAGACGTTGTTGCCTCTCAACCATGCGCA GGTGAAATCACTCTACAGAGGCCTCGCTTCTCCGGTGCTGGGCTATGGGG TGCTATTTGCCATGTCCTTCTCGGCGAACGGCCAAGCTCTTCGCTACCTG CGCAACAGGGATGGACGTGCGGCAAATGCTCCTGCTTCGGTTGCGGAGAT GACGCTGGCTGGTGCATGGGCAGGAGCTGTACAGGCCCCAGCACGGCAGG TGAACTGGTTTGGCACACTCTGAAACCTGCTCTGCATGGCCATGCATCTT GACATGTATTAGACTACGAGCAAACCTTGCAATGCTACGATATTACTGTA AGGTATTAGTGACTACTTTGTTCTGTCGAGCGCCAGAGTTGCAGGCAGCA TGCCTGGTACAGTGCCAAAACTTGCTGCAGGCACCAGCAGCAGGACAGGA TTTCGCAGCCAAGTCAACTGCAAGATCGATGTACCTGAGCATAACATGCT CTCCCCGCGTGGAACAGCTCTACAATTGGGCATTTGTATTACTTCGTGGA CCTCTGAGTTGCTTACACGGGTTCATGCGTGCTTGATTCAGGCACTGCAT GTCATGCCAACAATCAGCCTCTCTGTCTGTATTACAGAACTGCACACTTC TCCGATATTACATGTGCTGTGCAGCGTGGTGAAACTTCATCAAATGTGAG TGAGGCATACTGGGCGCGAAGTGCATGTGGTTCCATACAGCGCCTACGGT CCATTTGCTGAGAGCTGTGCAACGCTGACGAGAGCTCATGAAGGCCTGTA TGATGACTACATAGCGCCGCACTAGTTGGGGCTATCATGCAGACATGCCC GCGCGTGTTACCTAAAAAAGAATTGCTACTGGGTACATTGATGACTCCTT TTACGGCTGACGCAGACAATCGCGGTATTTGCCTTTGCCTGAATGCATGC CGCAAGTGCCATCTGCATCAATATACGCTATCGCAAATAACTGCTCATCT TCCTCAACAGACGTGACCTGCATTTGAGTGCACCCGTAGAAGCAACTACT AACAGCACTTGATGGTTTGTGTGCTTCCCGTAATGCATGCAGGTCTTTGA GCGCGTCAAGGGTGTGATGCAAGTGCGCAATGGCGCGGGCGGCAAAGCGC CTTACAGCTGGTCAGGCGCGTGCTTGGTGGACCTTGTTCGCACAGAAGGT GTACAGATGGGGCTGTTTCGCGGCATGGGCAGTCAGTTCATTAGAGAGGT CCCGCAGTTCGCACTATATTACCCGGCATACGATGTAGCAAAGAGGGCCA TCCTGCCTGCCGATGGGCACATCAGCCCTATACATATGCTGCTGGCAGGT GGCATCGCTGGCACTGTGCAGTGGCTGCCGCCAATCTACAACATTGATGT TCTGAAGACGAAAATCCAAACGGCTGCGCCCGGCACCTACAAGTCCATAG CCGATGCAGCAAGGAAAACTGTTGCCACAGAGGGGACAAAGGGGCTGTTC AGAGGGCTTGGGCCATCGCTGGTGCGCGCTTTCCCCCTTCATGCGACGAT ATTTGCGGGGTACGAGCTCACCATGGCTCATCTGCACAGTTGA
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Coding sequence (CDS) from alignment at Contig_93:480114..481706+

>mRNA_12063 ID=mRNA_12063|Name=jgi.p|Trimin1|172452|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=750bp|location=Sequence derived from alignment at Contig_93:480114..481706+ (Tribonema minus UTEX_B_3156 )
ATGTGCAGTGAATTTACTTTGCAGACGTTGTTGCCTCTCAACCATGCGCA
GGTGAAATCACTCTACAGAGGCCTCGCTTCTCCGGTGCTGGGCTATGGGG
TGCTATTTGCCATGTCCTTCTCGGCGAACGGCCAAGCTCTTCGCTACCTG
CGCAACAGGGATGGACGTGCGGCAAATGCTCCTGCTTCGGTTGCGGAGAT
GACGCTGGCTGGTGCATGGGCAGGAGCTGTACAGGCCCCAGCACGGCAGG
TCTTTGAGCGCGTCAAGGGTGTGATGCAAGTGCGCAATGGCGCGGGCGGC
AAAGCGCCTTACAGCTGGTCAGGCGCGTGCTTGGTGGACCTTGTTCGCAC
AGAAGGTGTACAGATGGGGCTGTTTCGCGGCATGGGCAGTCAGTTCATTA
GAGAGGTCCCGCAGTTCGCACTATATTACCCGGCATACGATGTAGCAAAG
AGGGCCATCCTGCCTGCCGATGGGCACATCAGCCCTATACATATGCTGCT
GGCAGGTGGCATCGCTGGCACTGTGCAGTGGCTGCCGCCAATCTACAACA
TTGATGTTCTGAAGACGAAAATCCAAACGGCTGCGCCCGGCACCTACAAG
TCCATAGCCGATGCAGCAAGGAAAACTGTTGCCACAGAGGGGACAAAGGG
GCTGTTCAGAGGGCTTGGGCCATCGCTGGTGCGCGCTTTCCCCCTTCATG
CGACGATATTTGCGGGGTACGAGCTCACCATGGCTCATCTGCACAGTTGA
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