mRNA_11930 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149960
Unique NamemRNA_11930
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149960 vs. uniprot
Match: A0A835ZGH9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 8.890e-21
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 CREHKTGDMQDVSHKRCMQCRLKIPKFGTEDGRPTHCGDC 120
            CREHKTGDMQDVSHKRCMQCRLKIPKFGTEDGRPTHCGDC
Sbjct:    1 CREHKTGDMQDVSHKRCMQCRLKIPKFGTEDGRPTHCGDC 40
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BLAST of jgi.p|Trimin1|149960 vs. uniprot
Match: A0A835ZBE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBE1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.030e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 CREHKTGDMQDVSHKRCMQCRLKIPKFGTEDGRPTH 108
            CREHKTGDMQDV+HKRCM+C LKIPKFGTEDGRPTH
Sbjct:  372 CREHKTGDMQDVAHKRCMRCGLKIPKFGTEDGRPTH 407
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BLAST of jgi.p|Trimin1|149960 vs. uniprot
Match: A0A836CCS5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.830e-8
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 CREHKTGDMQDVSHKRCMQCRLKIPKFGTEDGRPTH 108
            C +HKTGDMQDV+HK C  C LKIP FG EDG PTH
Sbjct:   15 CSDHKTGDMQDVAHKMCQGCGLKIPIFGIEDGSPTH 50
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149960 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZGH9_9STRA8.890e-21100.00Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
A0A835ZBE1_9STRA1.030e-1391.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCS5_9STRA1.830e-872.22Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:504995..505693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149960|gw1.111.82.1
Hectar predicted targeting categoryother localisation
TranscriptId150282
TrackFilteredModels1
ProteinId149960
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149960gene_11930Tribonema minus UTEX_B_3156 geneContig_111 504995..505693 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11930_1exon_11930_1Tribonema minus UTEX_B_3156 exonContig_111 504995..505693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11930CDS_11930Tribonema minus UTEX_B_3156 CDSContig_111 504995..505693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149960Trimin1|149960|gw1.111.82.1Tribonema minus UTEX_B_3156 polypeptideContig_111 504995..505693 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11930 ID=mRNA_11930|Name=jgi.p|Trimin1|149960|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_111:504995..505693- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCAGGGAGCACAAGACTGGAGACATGCAAGATGTGTCACACAAGAGGTG
CATGCAGTGTAGACTGAAGATACCCAAGTTTGGGACGGAGGACGGCAGGC
CGACCCACTGCGGTGACTGCAAGACGGCAGACATGCGTGATGTTGGCAAC
AGTAAGTGCAAGGCTTGCCGACTGAAGCAACCAATCTTTGGGACGGAGGA
GGGCCACCCCACGCACTGCGGTGACTGCAAGACGGCAGACATGCGAGATG
TAATAAGCAGGATGTGCGAGGGGTGCAGTCTTAAGCGACCAAGCTTCGGG
GTGAAGGATGGCAGCCCCACCCACTGCGGTGATTGCAAGACGGCAGTCAT
GAGAGATGTTGCACACAACAAGTGTGAAGCTTGTGGATTGAAGACACCCA
CCTTTGGCATGGAGGATGGCAGCCCCACCCACTGCGGTGACTGCAAGACG
GCAGACATGAGTGATGTTCGCAACAATAAATGCAAGGATTGCGGACTGAA
GCAACCAAGCTTCGGGACGGAGGAGGGCGACCCCACGCACTGCGGTGACT
GCAAGACGTCCAACATGCGCAATGTTGTCAGCATATTATGCGAACGGTGT
GGGCTGAAGACACCCAGCTTTGGGGTTGAGGACGGCCGTCCCAGCCATTG
CGGTGACTGCAAGACGGCAGACATGCGAGATGTTGCGAACAAGACATGT
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protein sequence of jgi.p|Trimin1|149960

>Trimin1|149960|gw1.111.82.1 ID=Trimin1|149960|gw1.111.82.1|Name=jgi.p|Trimin1|149960|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=233bp
CREHKTGDMQDVSHKRCMQCRLKIPKFGTEDGRPTHCGDCKTADMRDVGN
SKCKACRLKQPIFGTEEGHPTHCGDCKTADMRDVISRMCEGCSLKRPSFG
VKDGSPTHCGDCKTAVMRDVAHNKCEACGLKTPTFGMEDGSPTHCGDCKT
ADMSDVRNNKCKDCGLKQPSFGTEEGDPTHCGDCKTSNMRNVVSILCERC
GLKTPSFGVEDGRPSHCGDCKTADMRDVANKTC
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mRNA from alignment at Contig_111:504995..505693-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11930 ID=mRNA_11930|Name=jgi.p|Trimin1|149960|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=699bp|location=Sequence derived from alignment at Contig_111:504995..505693- (Tribonema minus UTEX_B_3156 )
TGCAGGGAGCACAAGACTGGAGACATGCAAGATGTGTCACACAAGAGGTG
CATGCAGTGTAGACTGAAGATACCCAAGTTTGGGACGGAGGACGGCAGGC
CGACCCACTGCGGTGACTGCAAGACGGCAGACATGCGTGATGTTGGCAAC
AGTAAGTGCAAGGCTTGCCGACTGAAGCAACCAATCTTTGGGACGGAGGA
GGGCCACCCCACGCACTGCGGTGACTGCAAGACGGCAGACATGCGAGATG
TAATAAGCAGGATGTGCGAGGGGTGCAGTCTTAAGCGACCAAGCTTCGGG
GTGAAGGATGGCAGCCCCACCCACTGCGGTGATTGCAAGACGGCAGTCAT
GAGAGATGTTGCACACAACAAGTGTGAAGCTTGTGGATTGAAGACACCCA
CCTTTGGCATGGAGGATGGCAGCCCCACCCACTGCGGTGACTGCAAGACG
GCAGACATGAGTGATGTTCGCAACAATAAATGCAAGGATTGCGGACTGAA
GCAACCAAGCTTCGGGACGGAGGAGGGCGACCCCACGCACTGCGGTGACT
GCAAGACGTCCAACATGCGCAATGTTGTCAGCATATTATGCGAACGGTGT
GGGCTGAAGACACCCAGCTTTGGGGTTGAGGACGGCCGTCCCAGCCATTG
CGGTGACTGCAAGACGGCAGACATGCGAGATGTTGCGAACAAGACATGT
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Coding sequence (CDS) from alignment at Contig_111:504995..505693-

>mRNA_11930 ID=mRNA_11930|Name=jgi.p|Trimin1|149960|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=699bp|location=Sequence derived from alignment at Contig_111:504995..505693- (Tribonema minus UTEX_B_3156 )
TGCAGGGAGCACAAGACTGGAGACATGCAAGATGTGTCACACAAGAGGTG
CATGCAGTGTAGACTGAAGATACCCAAGTTTGGGACGGAGGACGGCAGGC
CGACCCACTGCGGTGACTGCAAGACGGCAGACATGCGTGATGTTGGCAAC
AGTAAGTGCAAGGCTTGCCGACTGAAGCAACCAATCTTTGGGACGGAGGA
GGGCCACCCCACGCACTGCGGTGACTGCAAGACGGCAGACATGCGAGATG
TAATAAGCAGGATGTGCGAGGGGTGCAGTCTTAAGCGACCAAGCTTCGGG
GTGAAGGATGGCAGCCCCACCCACTGCGGTGATTGCAAGACGGCAGTCAT
GAGAGATGTTGCACACAACAAGTGTGAAGCTTGTGGATTGAAGACACCCA
CCTTTGGCATGGAGGATGGCAGCCCCACCCACTGCGGTGACTGCAAGACG
GCAGACATGAGTGATGTTCGCAACAATAAATGCAAGGATTGCGGACTGAA
GCAACCAAGCTTCGGGACGGAGGAGGGCGACCCCACGCACTGCGGTGACT
GCAAGACGTCCAACATGCGCAATGTTGTCAGCATATTATGCGAACGGTGT
GGGCTGAAGACACCCAGCTTTGGGGTTGAGGACGGCCGTCCCAGCCATTG
CGGTGACTGCAAGACGGCAGACATGCGAGATGTTGCGAACAAGACATGT
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