mRNA_11900 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A836CND4_9STRA (Ferritin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND4_9STRA) HSP 1 Score: 484 bits (1246), Expect = 9.130e-173 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1 Query: 1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN Sbjct: 1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 247
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A836CMD7_9STRA (Ferritin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD7_9STRA) HSP 1 Score: 403 bits (1036), Expect = 1.360e-140 Identity = 206/247 (83.40%), Postives = 221/247 (89.47%), Query Frame = 1 Query: 1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741 TDI IAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSP VQ YAEE+A NEIAHV VLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSP YSPY++D WFL G+FIFEDVGVTAYNGAA LLTNK+++G AASILAVEAYHGG IRTLLYQQED LTPY TVG A+TAISALRA VGGGKD L T+G++S+ P D+NALAYAR A EVLAIVYLGS++ PGGFFP GIN Sbjct: 11 TDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGIN 257
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A835YUW9_9STRA (Ferritin-like domain-containing protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW9_9STRA) HSP 1 Score: 372 bits (956), Expect = 1.320e-127 Identity = 193/264 (73.11%), Postives = 214/264 (81.06%), Query Frame = 1 Query: 4 DIMIAKFALN------------------LECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741 DI IAKFALN LECLEAEFYSYAA+GYGL+D+LRGYGPEPIGGMKA LSP+VQAYAEE+A+NEIAHVGVLRAALG+ APACPQIDIGPAFAA ANAA T PPY+PY ND FLLG+F+FEDVGVTAYNGAAPLLTNK I+ TAASILAVEAYHGG +RTLLYQQED LTP+T TVG+AV SALRA VGGGKD+ L TDG+LS+ P D+N+LA+AR A EVL IVYLGS+ PGGFFP GIN Sbjct: 46 DIAIAKFALNAQADCHSVPNIGFRVPLQLECLEAEFYSYAAYGYGLTDDLRGYGPEPIGGMKATLSPEVQAYAEEIAKNEIAHVGVLRAALGNLAPACPQIDIGPAFAAVANAAAATVFDPPYTPYDNDTSFLLGAFLFEDVGVTAYNGAAPLLTNKGILSTAASILAVEAYHGGSLRTLLYQQEDVVLTPHTFTVGEAVALASALRASVGGGKDKALETDGVLSIMPVDENSLAFARTATEVLNIVYLGSASTPGGFFPNGIN 309
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A836CQA2_9STRA (Ferritin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQA2_9STRA) HSP 1 Score: 337 bits (865), Expect = 1.100e-114 Identity = 174/250 (69.60%), Postives = 199/250 (79.60%), Query Frame = 1 Query: 4 DIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSP--DVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTD--GMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741 D+ I KFALNLECLEA+FYSYAAFG+GLSDE RG+GPEPIGG KA L+P QAYAEE+A NEIAHV LR LGD AP CP IDIGPAFAAAANAA GT L PP+SPY +DA F++G+F+FEDVGVTAYNG APL+ NK ++G A ILA+EAYHGG +RTLLYQQ D L PY TV DAV +ISALRA +GGGKD LTT G S+ PAD NALA+AR +EVLAIVYLGS+D PGGFFP G++ Sbjct: 1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 250
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A835ZGC8_9STRA (Ferritin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC8_9STRA) HSP 1 Score: 310 bits (795), Expect = 1.600e-103 Identity = 161/247 (65.18%), Postives = 183/247 (74.09%), Query Frame = 1 Query: 1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741 TD I FALNLECLEAEFYSYAAFG L+DE RG GP IGG +A LS D Q YAEE+A +EI HV +LR LGDAA CP +DIGPAFAAAANAAVG L+P Y+PY+ND WF LG+FIFEDVGVTAYNGAAPL+ NK + AA +L VEAYH G +RTLLYQ +D LTPY VTV A TA+S LR VGG KD + G L P D+N+L +AR +EVLAIVYLG + KPGGFFP GIN Sbjct: 36 TDTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGIN 282
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: I0YQP4_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQP4_COCSC) HSP 1 Score: 263 bits (671), Expect = 1.110e-84 Identity = 153/262 (58.40%), Postives = 178/262 (67.94%), Query Frame = 1 Query: 1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGT-TLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTT---DGML-----------SLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741 TDI I FALNLECLEAEFYSYAAFG GL+ L G GP GG KA LS VQ YA E+A +E+ HV LR+ALGD A CPQIDIG AF+A +AA+G+ S +SPY ND FLLGSF+FEDVGVTAY GAAP +T+K ++G A ILAVEAYH G IRTLLYQ + PY + D V A+S LRA VGGGKDQG+T+ DG L +L P + +LA+AR EVLAIVY GS+ PG FFP GIN Sbjct: 23 TDIQILNFALNLECLEAEFYSYAAFGKGLNATLLGGGPGSTGGQKAKLSYAVQQYALEIAEDELNHVAFLRSALGDKAVPCPQIDIGTAFSAIIDAALGSKATSYKFSPYDNDLDFLLGSFLFEDVGVTAYLGAAPAITDKTVLGAAGGILAVEAYHAGIIRTLLYQDGAYPVVPYKIQTVDFVQALSNLRAAVGGGKDQGITSPAADGSLYVPYLTSKYESNLVPTNAASLAFARTIPEVLAIVYGGSASTPGAFFPEGIN 284
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A7L9QEA2_9CHLO (Putative extracellular protein CSOL_059a n=1 Tax=Pseudococcomyxa simplex TaxID=464287 RepID=A0A7L9QEA2_9CHLO) HSP 1 Score: 257 bits (657), Expect = 1.470e-82 Identity = 150/263 (57.03%), Postives = 181/263 (68.82%), Query Frame = 1 Query: 1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGT-TLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKA-IVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLT---TDGML-----------SLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741 TD+ I FALNLECLEAEFYSYAAFG GL+ L G GP GG KA LS VQ YA E+A++EI HV LR+ALG AA CPQIDIG AF+A NAA+GT S +SPY ND FLLG+F+FEDVGVTAY+GAAP +++K ++ AA IL+VEAYH G IRTLL+Q + PY + D V A+S LRA VGGGKD+G+T +G L +L P +D++LA+AR EVLAIVY GS+ PG FFP GIN Sbjct: 22 TDVNILNFALNLECLEAEFYSYAAFGKGLNATLLGGGPGATGGEKAQLSYSVQQYATEIAQDEINHVAFLRSALGAAAIPCPQIDIGAAFSAVINAALGTKATSYKFSPYDNDLDFLLGAFLFEDVGVTAYSGAAPFISDKTTVLAAAAGILSVEAYHAGIIRTLLFQDGAYPVKPYKIQTVDFVQALSNLRAAVGGGKDKGITDPPANGSLYIPYLTSKYSSNLVPTNDDSLAFARTIPEVLAIVYGGSASTPGAFFPQGIN 284
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A8J9RR61_9CHLO (Desiccation-related protein PCC13-62 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RR61_9CHLO) HSP 1 Score: 257 bits (656), Expect = 8.850e-82 Identity = 145/257 (56.42%), Postives = 171/257 (66.54%), Query Frame = 1 Query: 1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTT-LSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLT---------TDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741 TD I FALNLECLEA+FYSYAA+G GL+ LRG GP GG KA LS VQ YA E+A +E+ HV LR ALG AA CPQID+GPAFAA AA+G+ + +SPY ND FLL +FI EDVGVTAYNGAAPL+ K VG AASILA EAYHGG IRTLLYQ+ + PY++ D +S LR VGGGKD+G+T T +L P D N+L +AR EVL IVY GS+ KP F+P G+N Sbjct: 67 TDADILNFALNLECLEADFYSYAAYGSGLNSTLRGGGPMATGGKKAVLSSPVQNYANEIALDEVNHVAFLRMALGTAAVPCPQIDVGPAFAAIVKAALGSANMDTMFSPYDNDLDFLLAAFILEDVGVTAYNGAAPLIQAKKNVGAAASILATEAYHGGIIRTLLYQRGYDTVMPYSLQTVDFAQKLSNLRGTVGGGKDEGITSPMANGVKNTPYSSNLVPTDSNSLVFARTPTEVLNIVYGGSAAKPSAFYPNGVN 323
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: UPI00166CE419 (ferritin-like domain-containing protein n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI00166CE419) HSP 1 Score: 245 bits (625), Expect = 1.090e-77 Identity = 143/249 (57.43%), Postives = 171/249 (68.67%), Query Frame = 1 Query: 4 DIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAA---LGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741 DI + FALNLE LEAEFY +AAFG GLS+ G GP GG KA LS +Q AEE+AR+E AHV LRA LG A PQ+DIGPAFAAAA+AA G + +SPY ND +F G+FIFEDVGVTAY+GAA L+T+ ++ AA ILAVEAYH GEIR+ LY Q+D + P +TV D V AISALR VGGGKD+G+T G ++ AD NA+AY R EVL IVYL + GGFFP G+N Sbjct: 39 DIDVLNFALNLEYLEAEFYLWAAFGAGLSNADAGGGPAATGGKKATLSAALQQRAEEIARDEEAHVKALRATITKLGGTPVARPQLDIGPAFAAAADAASGGKIKG-FSPYTNDLFFAHGAFIFEDVGVTAYSGAATLITSPDVLQAAAGILAVEAYHAGEIRSYLYDQKDTVVVP-GLTVEDVVAAISALRGSVGGGKDEGITKGGKANIVAADANAIAYHRTTREVLNIVYLAAGATKGGFFPNGLN 285
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A511MYZ7_9DEIO (Uncharacterized protein n=1 Tax=Deinococcus cellulosilyticus NBRC 106333 = KACC 11606 TaxID=1223518 RepID=A0A511MYZ7_9DEIO) HSP 1 Score: 243 bits (621), Expect = 4.270e-77 Identity = 146/251 (58.17%), Postives = 171/251 (68.13%), Query Frame = 1 Query: 4 DIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAA---LGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYT--VTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741 D+ + FALNLE LEAEFY +AAFG GLS G GP GG KA LS +Q AEE+AR+E AHV LRA LG PQIDIGPAFAAAA+AA G + +SPY ND +F+ G+F+FEDVGVTAYNGAA LLT+ ++ AA ILAVEAYH G IR LY+ + TP +TV D V AISALR KVGGGKD+G+T G ++ AD NA+AYAR EVL IVYLG S K GGFFP G+N Sbjct: 39 DLDVLNFALNLEYLEAEFYLWAAFGTGLSAADAGGGPVATGGKKATLSAGIQQIAEEIARDEEAHVRALRATITKLGGTPVPRPQIDIGPAFAAAADAASGGKIKG-FSPYANDLFFMHGAFVFEDVGVTAYNGAATLLTDSGVLQAAAGILAVEAYHAGAIRHYLYEN---RTTPVAAGLTVEDVVAAISALRGKVGGGKDEGITKGGKANIVAADANAIAYARTTREVLNIVYLGGSAK-GGFFPNGLN 284 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11900 ID=mRNA_11900|Name=jgi.p|Trimin1|131261|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=741bp|location=Sequence derived from alignment at Contig_111:364801..366808- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACTGACATCATGATCGCCAAGTTTGCCTTGAACCTGGAATGCCTCGAAGCback to top protein sequence of jgi.p|Trimin1|131261 >Trimin1|131261|gw1.111.10.1 ID=Trimin1|131261|gw1.111.10.1|Name=jgi.p|Trimin1|131261|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=247bp TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPback to top mRNA from alignment at Contig_111:364801..366808- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11900 ID=mRNA_11900|Name=jgi.p|Trimin1|131261|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2008bp|location=Sequence derived from alignment at Contig_111:364801..366808- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_111:364801..366808- >mRNA_11900 ID=mRNA_11900|Name=jgi.p|Trimin1|131261|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=741bp|location=Sequence derived from alignment at Contig_111:364801..366808- (Tribonema minus UTEX_B_3156 )back to top |