mRNA_11900 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131261
Unique NamemRNA_11900
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A836CND4_9STRA (Ferritin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND4_9STRA)

HSP 1 Score: 484 bits (1246), Expect = 9.130e-173
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1
Query:    1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741
            TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN
Sbjct:    1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 247          
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A836CMD7_9STRA (Ferritin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD7_9STRA)

HSP 1 Score: 403 bits (1036), Expect = 1.360e-140
Identity = 206/247 (83.40%), Postives = 221/247 (89.47%), Query Frame = 1
Query:    1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741
            TDI IAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSP VQ YAEE+A NEIAHV VLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSP YSPY++D WFL G+FIFEDVGVTAYNGAA LLTNK+++G AASILAVEAYHGG IRTLLYQQED  LTPY  TVG A+TAISALRA VGGGKD  L T+G++S+ P D+NALAYAR A EVLAIVYLGS++ PGGFFP GIN
Sbjct:   11 TDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGIN 257          
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A835YUW9_9STRA (Ferritin-like domain-containing protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW9_9STRA)

HSP 1 Score: 372 bits (956), Expect = 1.320e-127
Identity = 193/264 (73.11%), Postives = 214/264 (81.06%), Query Frame = 1
Query:    4 DIMIAKFALN------------------LECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741
            DI IAKFALN                  LECLEAEFYSYAA+GYGL+D+LRGYGPEPIGGMKA LSP+VQAYAEE+A+NEIAHVGVLRAALG+ APACPQIDIGPAFAA ANAA  T   PPY+PY ND  FLLG+F+FEDVGVTAYNGAAPLLTNK I+ TAASILAVEAYHGG +RTLLYQQED  LTP+T TVG+AV   SALRA VGGGKD+ L TDG+LS+ P D+N+LA+AR A EVL IVYLGS+  PGGFFP GIN
Sbjct:   46 DIAIAKFALNAQADCHSVPNIGFRVPLQLECLEAEFYSYAAYGYGLTDDLRGYGPEPIGGMKATLSPEVQAYAEEIAKNEIAHVGVLRAALGNLAPACPQIDIGPAFAAVANAAAATVFDPPYTPYDNDTSFLLGAFLFEDVGVTAYNGAAPLLTNKGILSTAASILAVEAYHGGSLRTLLYQQEDVVLTPHTFTVGEAVALASALRASVGGGKDKALETDGVLSIMPVDENSLAFARTATEVLNIVYLGSASTPGGFFPNGIN 309          
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A836CQA2_9STRA (Ferritin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQA2_9STRA)

HSP 1 Score: 337 bits (865), Expect = 1.100e-114
Identity = 174/250 (69.60%), Postives = 199/250 (79.60%), Query Frame = 1
Query:    4 DIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSP--DVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTD--GMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741
            D+ I KFALNLECLEA+FYSYAAFG+GLSDE RG+GPEPIGG KA L+P    QAYAEE+A NEIAHV  LR  LGD AP CP IDIGPAFAAAANAA GT L PP+SPY +DA F++G+F+FEDVGVTAYNG APL+ NK ++G A  ILA+EAYHGG +RTLLYQQ D  L PY  TV DAV +ISALRA +GGGKD  LTT   G  S+ PAD NALA+AR  +EVLAIVYLGS+D PGGFFP G++
Sbjct:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 250          
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A835ZGC8_9STRA (Ferritin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC8_9STRA)

HSP 1 Score: 310 bits (795), Expect = 1.600e-103
Identity = 161/247 (65.18%), Postives = 183/247 (74.09%), Query Frame = 1
Query:    1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741
            TD  I  FALNLECLEAEFYSYAAFG  L+DE RG GP  IGG +A LS D Q YAEE+A +EI HV +LR  LGDAA  CP +DIGPAFAAAANAAVG  L+P Y+PY+ND WF LG+FIFEDVGVTAYNGAAPL+ NK  +  AA +L VEAYH G +RTLLYQ +D  LTPY VTV  A TA+S LR  VGG KD  +   G   L P D+N+L +AR  +EVLAIVYLG + KPGGFFP GIN
Sbjct:   36 TDTDILNFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGIN 282          
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: I0YQP4_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQP4_COCSC)

HSP 1 Score: 263 bits (671), Expect = 1.110e-84
Identity = 153/262 (58.40%), Postives = 178/262 (67.94%), Query Frame = 1
Query:    1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGT-TLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTT---DGML-----------SLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741
            TDI I  FALNLECLEAEFYSYAAFG GL+  L G GP   GG KA LS  VQ YA E+A +E+ HV  LR+ALGD A  CPQIDIG AF+A  +AA+G+   S  +SPY ND  FLLGSF+FEDVGVTAY GAAP +T+K ++G A  ILAVEAYH G IRTLLYQ     + PY +   D V A+S LRA VGGGKDQG+T+   DG L           +L P +  +LA+AR   EVLAIVY GS+  PG FFP GIN
Sbjct:   23 TDIQILNFALNLECLEAEFYSYAAFGKGLNATLLGGGPGSTGGQKAKLSYAVQQYALEIAEDELNHVAFLRSALGDKAVPCPQIDIGTAFSAIIDAALGSKATSYKFSPYDNDLDFLLGSFLFEDVGVTAYLGAAPAITDKTVLGAAGGILAVEAYHAGIIRTLLYQDGAYPVVPYKIQTVDFVQALSNLRAAVGGGKDQGITSPAADGSLYVPYLTSKYESNLVPTNAASLAFARTIPEVLAIVYGGSASTPGAFFPEGIN 284          
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A7L9QEA2_9CHLO (Putative extracellular protein CSOL_059a n=1 Tax=Pseudococcomyxa simplex TaxID=464287 RepID=A0A7L9QEA2_9CHLO)

HSP 1 Score: 257 bits (657), Expect = 1.470e-82
Identity = 150/263 (57.03%), Postives = 181/263 (68.82%), Query Frame = 1
Query:    1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGT-TLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKA-IVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLT---TDGML-----------SLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741
            TD+ I  FALNLECLEAEFYSYAAFG GL+  L G GP   GG KA LS  VQ YA E+A++EI HV  LR+ALG AA  CPQIDIG AF+A  NAA+GT   S  +SPY ND  FLLG+F+FEDVGVTAY+GAAP +++K  ++  AA IL+VEAYH G IRTLL+Q     + PY +   D V A+S LRA VGGGKD+G+T    +G L           +L P +D++LA+AR   EVLAIVY GS+  PG FFP GIN
Sbjct:   22 TDVNILNFALNLECLEAEFYSYAAFGKGLNATLLGGGPGATGGEKAQLSYSVQQYATEIAQDEINHVAFLRSALGAAAIPCPQIDIGAAFSAVINAALGTKATSYKFSPYDNDLDFLLGAFLFEDVGVTAYSGAAPFISDKTTVLAAAAGILSVEAYHAGIIRTLLFQDGAYPVKPYKIQTVDFVQALSNLRAAVGGGKDKGITDPPANGSLYIPYLTSKYSSNLVPTNDDSLAFARTIPEVLAIVYGGSASTPGAFFPQGIN 284          
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A8J9RR61_9CHLO (Desiccation-related protein PCC13-62 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RR61_9CHLO)

HSP 1 Score: 257 bits (656), Expect = 8.850e-82
Identity = 145/257 (56.42%), Postives = 171/257 (66.54%), Query Frame = 1
Query:    1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTT-LSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLT---------TDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741
            TD  I  FALNLECLEA+FYSYAA+G GL+  LRG GP   GG KA LS  VQ YA E+A +E+ HV  LR ALG AA  CPQID+GPAFAA   AA+G+  +   +SPY ND  FLL +FI EDVGVTAYNGAAPL+  K  VG AASILA EAYHGG IRTLLYQ+    + PY++   D    +S LR  VGGGKD+G+T         T    +L P D N+L +AR   EVL IVY GS+ KP  F+P G+N
Sbjct:   67 TDADILNFALNLECLEADFYSYAAYGSGLNSTLRGGGPMATGGKKAVLSSPVQNYANEIALDEVNHVAFLRMALGTAAVPCPQIDVGPAFAAIVKAALGSANMDTMFSPYDNDLDFLLAAFILEDVGVTAYNGAAPLIQAKKNVGAAASILATEAYHGGIIRTLLYQRGYDTVMPYSLQTVDFAQKLSNLRGTVGGGKDEGITSPMANGVKNTPYSSNLVPTDSNSLVFARTPTEVLNIVYGGSAAKPSAFYPNGVN 323          
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: UPI00166CE419 (ferritin-like domain-containing protein n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI00166CE419)

HSP 1 Score: 245 bits (625), Expect = 1.090e-77
Identity = 143/249 (57.43%), Postives = 171/249 (68.67%), Query Frame = 1
Query:    4 DIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAA---LGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741
            DI +  FALNLE LEAEFY +AAFG GLS+   G GP   GG KA LS  +Q  AEE+AR+E AHV  LRA    LG    A PQ+DIGPAFAAAA+AA G  +   +SPY ND +F  G+FIFEDVGVTAY+GAA L+T+  ++  AA ILAVEAYH GEIR+ LY Q+D  + P  +TV D V AISALR  VGGGKD+G+T  G  ++  AD NA+AY R   EVL IVYL +    GGFFP G+N
Sbjct:   39 DIDVLNFALNLEYLEAEFYLWAAFGAGLSNADAGGGPAATGGKKATLSAALQQRAEEIARDEEAHVKALRATITKLGGTPVARPQLDIGPAFAAAADAASGGKIKG-FSPYTNDLFFAHGAFIFEDVGVTAYSGAATLITSPDVLQAAAGILAVEAYHAGEIRSYLYDQKDTVVVP-GLTVEDVVAAISALRGSVGGGKDEGITKGGKANIVAADANAIAYHRTTREVLNIVYLAAGATKGGFFPNGLN 285          
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Match: A0A511MYZ7_9DEIO (Uncharacterized protein n=1 Tax=Deinococcus cellulosilyticus NBRC 106333 = KACC 11606 TaxID=1223518 RepID=A0A511MYZ7_9DEIO)

HSP 1 Score: 243 bits (621), Expect = 4.270e-77
Identity = 146/251 (58.17%), Postives = 171/251 (68.13%), Query Frame = 1
Query:    4 DIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAA---LGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYT--VTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 741
            D+ +  FALNLE LEAEFY +AAFG GLS    G GP   GG KA LS  +Q  AEE+AR+E AHV  LRA    LG      PQIDIGPAFAAAA+AA G  +   +SPY ND +F+ G+F+FEDVGVTAYNGAA LLT+  ++  AA ILAVEAYH G IR  LY+    + TP    +TV D V AISALR KVGGGKD+G+T  G  ++  AD NA+AYAR   EVL IVYLG S K GGFFP G+N
Sbjct:   39 DLDVLNFALNLEYLEAEFYLWAAFGTGLSAADAGGGPVATGGKKATLSAGIQQIAEEIARDEEAHVRALRATITKLGGTPVPRPQIDIGPAFAAAADAASGGKIKG-FSPYANDLFFMHGAFVFEDVGVTAYNGAATLLTDSGVLQAAAGILAVEAYHAGAIRHYLYEN---RTTPVAAGLTVEDVVAAISALRGKVGGGKDEGITKGGKANIVAADANAIAYARTTREVLNIVYLGGSAK-GGFFPNGLN 284          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131261 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CND4_9STRA9.130e-173100.00Ferritin-like domain-containing protein (Fragment)... [more]
A0A836CMD7_9STRA1.360e-14083.40Ferritin-like domain-containing protein n=1 Tax=Tr... [more]
A0A835YUW9_9STRA1.320e-12773.11Ferritin-like domain-containing protein n=3 Tax=Tr... [more]
A0A836CQA2_9STRA1.100e-11469.60Ferritin-like domain-containing protein (Fragment)... [more]
A0A835ZGC8_9STRA1.600e-10365.18Ferritin-like domain-containing protein n=1 Tax=Tr... [more]
I0YQP4_COCSC1.110e-8458.40Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A7L9QEA2_9CHLO1.470e-8257.03Putative extracellular protein CSOL_059a n=1 Tax=P... [more]
A0A8J9RR61_9CHLO8.850e-8256.42Desiccation-related protein PCC13-62 n=1 Tax=Cocco... [more]
UPI00166CE4191.090e-7757.43ferritin-like domain-containing protein n=1 Tax=De... [more]
A0A511MYZ7_9DEIO4.270e-7758.17Uncharacterized protein n=1 Tax=Deinococcus cellul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:364801..366808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131261|gw1.111.10.1
DescriptionDesiccation-related protein PCC13-62-like
COG categoryS
Max annot lvl33090|Viridiplantae
EggNOG OGs2CMPR@1|root,2QR8B@2759|Eukaryota,37II1@33090|Viridiplantae
Evalue1.82e-85
Seed ortholog248742.XP_005645257.1
Hectar predicted targeting categoryother localisation
TranscriptId131583
TrackFilteredModels1
ProteinId131261
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131261gene_11900Tribonema minus UTEX_B_3156 geneContig_111 364801..366808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131261Trimin1|131261|gw1.111.10.1Tribonema minus UTEX_B_3156 polypeptideContig_111 364801..366808 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11900_4exon_11900_4Tribonema minus UTEX_B_3156 exonContig_111 364801..365055 -
exon_11900_3exon_11900_3Tribonema minus UTEX_B_3156 exonContig_111 365856..365965 -
exon_11900_2exon_11900_2Tribonema minus UTEX_B_3156 exonContig_111 366263..366605 -
exon_11900_1exon_11900_1Tribonema minus UTEX_B_3156 exonContig_111 366776..366808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11900CDS_11900Tribonema minus UTEX_B_3156 CDSContig_111 366776..366808 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11900 ID=mRNA_11900|Name=jgi.p|Trimin1|131261|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=741bp|location=Sequence derived from alignment at Contig_111:364801..366808- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACTGACATCATGATCGCCAAGTTTGCCTTGAACCTGGAATGCCTCGAAGC
CGAGTTCTACAGCTACGCTGCGTTTGGCTACGGTTTGTCGGACGAGCTTC
GTGGTTACGGCCCTGAGCCCATCGGGGGCATGAAGGCTGCGCTCTCCCCT
GATGTCCAGGCCTACGCAGAGGAGGTCGCTCGCAACGAGATTGCGCACGT
GGGTGTCCTGCGCGCCGCCCTTGGCGACGCAGCCCCCGCTTGCCCCCAGA
TCGACATTGGCCCTGCCTTCGCTGCTGCTGCCAATGCCGCTGTGGGCACC
ACTCTCAGCCCTCCTTACAGTCCCTACTACAATGACGCTTGGTTTTTACT
GGGCAGCTTCATCTTCGAGGATGTCGGTGTGACGGCGTACAACGGTGCTG
CCCCTCTGCTCACCAACAAGGCCATCGTCGGCACTGCCGCCAGCATCTTG
GCGGTGGAGGCTTACCACGGTGGCGAAATCCGTACGCTCCTGTACCAGCA
GGAGGACCAGCAGCTGACCCCCTACACGGTCACCGTCGGCGACGCCGTCA
CCGCCATCTCCGCGCTGCGCGCCAAGGTCGGCGGCGGCAAGGACCAGGGC
CTCACGACGGACGGCATGCTGTCGCTCACGCCCGCGGACGACAACGCGCT
CGCGTACGCGCGCGAGGCGGAGGAGGTCCTCGCGATAGTGTACCTGGGCA
GCTCTGACAAGCCCGGCGGCTTCTTCCCCTGCGGCATCAAC
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protein sequence of jgi.p|Trimin1|131261

>Trimin1|131261|gw1.111.10.1 ID=Trimin1|131261|gw1.111.10.1|Name=jgi.p|Trimin1|131261|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=247bp
TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSP
DVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGT
TLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASIL
AVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQG
LTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN
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mRNA from alignment at Contig_111:364801..366808-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11900 ID=mRNA_11900|Name=jgi.p|Trimin1|131261|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2008bp|location=Sequence derived from alignment at Contig_111:364801..366808- (Tribonema minus UTEX_B_3156 )
ACTGACATCATGATCGCCAAGTTTGCCTTGAACGTGAGTGCTGCGCAGCT GCGTGTCGCTCGTCTGAGAGAGCTCCGACGTCACGCTCGCATTTGATCGA ACTCGTGACCCTTATCTGACGCATGCTCTCTTGCCTGCACGCCATCGCCC TCCGTGATTCTGACGCGCAATCAACGCCGCTGCAAACCATTGCTCTGTCG CAGCTGGAATGCCTCGAAGCCGAGTTCTACAGCTACGCTGCGTTTGGCTA CGGTTTGTCGGACGAGCTTCGTGGTTACGGCCCTGAGCCCATCGGGGGCA TGAAGGCTGCGCTCTCCCCTGATGTCCAGGCCTACGCAGAGGAGGTCGCT CGCAACGAGATTGCGCACGTGGGTGTCCTGCGCGCCGCCCTTGGCGACGC AGCCCCCGCTTGCCCCCAGATCGACATTGGCCCTGCCTTCGCTGCTGCTG CCAATGCCGCTGTGGGCACCACTCTCAGCCCTCCTTACAGTCCCTACTAC AATGACGCTTGGTTTTTACTGGGCAGCTTCATCTTCGAGGATGTCGGTGA GTCCCATGCATTACATGCATTGGCTGTAGTTCCATCTGCTTGCCAGCGGT TGCTGCTGCTTGGGCCAGCTCAAACTTGCGCTCGTCCACACCCGGCATGT CCATCCATAGCCGGCAATGGTGTGACAAAGGGCCGTCATTGAATGCACTG CGCGTGTATTCACCAACTCCGCCAAGACTCCCGCGTTGTACCCGTATGTA ACATACGGTCTGTTGCAGTGCTCACTTGACATTGCATTGCTCACATGTTT ACCACCTACCGCTTCATTAATGAATTATGTATTCTCCCTGCAGGTGTGAC GGCGTACAACGGTGCTGCCCCTCTGCTCACCAACAAGGCCATCGTCGGCA CTGCCGCCAGCATCTTGGCGGTGGAGGCTTACCACGGTGGCGAAATCCGT ACGGTGAGCATATGCGCACTGTCAAAGCATGAACATGCTTCGCATGAGGG TTTGCCGATGACGTATTGCAATTGTGATCAGGAGGGGTATCATAGAAAGC TGCCTGAACAGACACACCATCTACCACCTGCCACAAGAGGTGCATAGATC TGTACTATAGTCCAGCCCTTCCGCAAGACGTTTTGCGTCAGCTGTGCCCT ATACCTAGATGCACTGTGATTATGATGCATGCATCAGCCATGACTGATGC CAGTAAGGCGCCGGTGATGATGGGCACGGACAGAGATATCAGGTAAGTCG GCCAGTATACACTTCTAATGAGCCCAATAGTGCATGACTGTCCTATAGTA TGTAGCTTTATCAGCACCTCAAACCAAGCCACTTTTGTCGCTCATGCACT TGGCTTTCGATGCAAGCAGATGGTGCTACAGGCACACGATTGCACAATAC TTTGTAGCTGACTGCAAAGGCACACCTCATACGACCAGTTTGCGGCCGCC TGTTGCAATGTGCTGTCGTATTGGCAACAAGATGAGGAGCAGCGCCTAGA CAGCCATCAAATCCACCATCCACGCTGCATATTCTCTGCAGTCCACTCTC TTGCGCAAGACTTGAAGTCGAAAGAATAATCAGAAACTCTACCACTCTGC CACTGCTGTCTGCTGTCTGCGAGCCCACTGCTGCCACCTTCAGCATAAAT ACACGTCTCTTCACTCTCTGTTGATGTCCACAACAGCGCCCGCATGCACC GCAACACCACCTTCACCGACCCCCCCCCCCCCCCCCCTCCCCCCCGTGCG CAGCTCCTGTACCAGCAGGAGGACCAGCAGCTGACCCCCTACACGGTCAC CGTCGGCGACGCCGTCACCGCCATCTCCGCGCTGCGCGCCAAGGTCGGCG GCGGCAAGGACCAGGGCCTCACGACGGACGGCATGCTGTCGCTCACGCCC GCGGACGACAACGCGCTCGCGTACGCGCGCGAGGCGGAGGAGGTCCTCGC GATAGTGTACCTGGGCAGCTCTGACAAGCCCGGCGGCTTCTTCCCCTGCG GCATCAAC
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Coding sequence (CDS) from alignment at Contig_111:364801..366808-

>mRNA_11900 ID=mRNA_11900|Name=jgi.p|Trimin1|131261|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=741bp|location=Sequence derived from alignment at Contig_111:364801..366808- (Tribonema minus UTEX_B_3156 )
ACTGACATCATGATCGCCAAGTTTGCCTTGAACCTGGAATGCCTCGAAGC
CGAGTTCTACAGCTACGCTGCGTTTGGCTACGGTTTGTCGGACGAGCTTC
GTGGTTACGGCCCTGAGCCCATCGGGGGCATGAAGGCTGCGCTCTCCCCT
GATGTCCAGGCCTACGCAGAGGAGGTCGCTCGCAACGAGATTGCGCACGT
GGGTGTCCTGCGCGCCGCCCTTGGCGACGCAGCCCCCGCTTGCCCCCAGA
TCGACATTGGCCCTGCCTTCGCTGCTGCTGCCAATGCCGCTGTGGGCACC
ACTCTCAGCCCTCCTTACAGTCCCTACTACAATGACGCTTGGTTTTTACT
GGGCAGCTTCATCTTCGAGGATGTCGGTGTGACGGCGTACAACGGTGCTG
CCCCTCTGCTCACCAACAAGGCCATCGTCGGCACTGCCGCCAGCATCTTG
GCGGTGGAGGCTTACCACGGTGGCGAAATCCGTACGCTCCTGTACCAGCA
GGAGGACCAGCAGCTGACCCCCTACACGGTCACCGTCGGCGACGCCGTCA
CCGCCATCTCCGCGCTGCGCGCCAAGGTCGGCGGCGGCAAGGACCAGGGC
CTCACGACGGACGGCATGCTGTCGCTCACGCCCGCGGACGACAACGCGCT
CGCGTACGCGCGCGAGGCGGAGGAGGTCCTCGCGATAGTGTACCTGGGCA
GCTCTGACAAGCCCGGCGGCTTCTTCCCCTGCGGCATCAAC
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