mRNA_11727 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131501
Unique NamemRNA_11727
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131501 vs. uniprot
Match: A0A835YM65_9STRA (Mannosyltransferase putative-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM65_9STRA)

HSP 1 Score: 467 bits (1201), Expect = 1.420e-166
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1
Query:    1 RHWLRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGTIDGDKQMYGFAFAATGQ 681
            RHWLRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGTIDGDKQMYGFAFAATGQ
Sbjct:    1 RHWLRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGTIDGDKQMYGFAFAATGQ 227          
BLAST of jgi.p|Trimin1|131501 vs. uniprot
Match: A0A835YRK4_9STRA (Alpha-mannosyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK4_9STRA)

HSP 1 Score: 386 bits (992), Expect = 5.030e-135
Identity = 185/206 (89.81%), Postives = 195/206 (94.66%), Query Frame = 1
Query:   64 GAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGTIDGDKQMYGFAFAATGQ 681
            GAGIVFCGGGASMLRQVM QI+YLRETLGCTLP+EVMHLGE EMT GWRAAL+ALPDTRVVDLYSL+DPLT+ PVTRP G+FTHVKPA VLLSSFEEVIFLDTNNYAM+DP ELL RDQY+RDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRW+ELVTAWAL  PLAARGTI GDKQ+YGFAFAATGQ
Sbjct:    2 GAGIVFCGGGASMLRQVMAQIIYLRETLGCTLPIEVMHLGEAEMTAGWRAALEALPDTRVVDLYSLVDPLTERPVTRPAGAFTHVKPAAVLLSSFEEVIFLDTNNYAMLDPTELLDRDQYRRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWRELVTAWALMTPLAARGTIHGDKQVYGFAFAATGQ 207          
BLAST of jgi.p|Trimin1|131501 vs. uniprot
Match: A0A1X2GA01_9FUNG (Nucleotide-diphospho-sugar transferase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GA01_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 6.170e-18
Identity = 68/220 (30.91%), Postives = 110/220 (50.00%), Query Frame = 1
Query:   19 VQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDT-RVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGT-IDGDKQMYGFAFAA 672
            + D+   YP   F  G GIVF  G     ++V+  I  LR    CTLP+EV HL ++  +      L+AL    R +    L+ P+TQ   T        +KPA ++ S FE+V+++D++N    DP  L    +YK +G L W D W  T+ A+   ++++L +     +E  ESG M   K++ W+ L  AW + +        ++GDK  + +A+ A
Sbjct:  130 IDDSQNVYPVNAFH-GRGIVFVAGNRDTYQRVITSIYLLRHH-HCTLPIEVWHLPDEAPSTAIIRQLKALNVMPRDLSNQKLVRPMTQRNGTE---KQFQIKPAAIINSEFEQVLYMDSDNAPTADPTFLFDTPEYKANGALFWPDYW-KTNAAN--GIFNILDIDCQDEWEQ-ESGQMVIHKKKSWRPLQLAWYMNQNNDIYFQFLNGDKDTFKYAWKA 340          
BLAST of jgi.p|Trimin1|131501 vs. uniprot
Match: F2UJ78_SALR5 (Apple domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UJ78_SALR5)

HSP 1 Score: 91.3 bits (225), Expect = 1.580e-17
Identity = 64/214 (29.91%), Postives = 107/214 (50.00%), Query Frame = 1
Query:   40 YPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGS-FTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLAARGTIDGDKQMYGFAFAATG 678
            YPEG++  G GI+   GG   L   +  +  LR+ LGCTL +++ HLG +E+    R  L A  D    D  +++ P   +P+   VG     +KP  +L S  +EV+ +D++N  ++DP  L     ++  G + W D W ++    +  ++++L + P   +E  ESG +  +KR  W+ L             G I+GDK  + FA+ A G
Sbjct:  227 YPEGKYR-GRGIIIVAGGR-YLASALVSVKMLRD-LGCTLRIQIWHLGPEEVDAAQREVLAAY-DVEPRDFTAVVPPELLKPIESNVGMRLFQLKPLALLYSDLQEVLLIDSDNTPLMDPTYLFSEQGFQDTGTVFWPDYWKTS---FDNPIWAILGMEPKAMWEQ-ESGQLLINKRAAWRGLNLCVHFNSAFYM-GLINGDKDTFRFAWLAAG 431          
BLAST of jgi.p|Trimin1|131501 vs. uniprot
Match: UPI001B8A120F (hypothetical protein n=1 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI001B8A120F)

HSP 1 Score: 90.9 bits (224), Expect = 1.680e-17
Identity = 71/216 (32.87%), Postives = 104/216 (48.15%), Query Frame = 1
Query:   10 LRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWALAKPLA-ARGTIDGDKQMY 654
            LR  Q A    PEG+F+ G GIV C GG          I  LR  LGC+LP++V HLG  E+++G +  L+ L    VVD   +I         R  G +  +KP  +  S F+EV+FLD +   ++DP  +   D Y+    L W D   +  +  E  ++S + +PP     + ES ++  DKRR W  L  A  L +      G + GDK  +
Sbjct:    9 LRRRQAAPAICPEGRFA-GRGIVTCAGGLRYFTCAWMLIWTLRRKLGCSLPIQVWHLGRREISEGMQLILEEL-GVEVVDAEQMISLYP----ARVSGGWP-LKPYAIANSRFQEVLFLDADTIPLVDPETVFDWDVYRSAPALFWPD---NLDLTKENGIWSKVGLPPRDCV-SFESSIIALDKRRCWPLLDLAMLLNEHWEDVYGFLHGDKDTF 213          
BLAST of jgi.p|Trimin1|131501 vs. uniprot
Match: A0A0D2MT28_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MT28_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 3.600e-17
Identity = 76/204 (37.25%), Postives = 99/204 (48.53%), Query Frame = 1
Query:    1 RHWLRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDT-RVVDLYSL-IDPLTQEPVTRP---VGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENS-ESGVMYWDKRRRWKELVTA 594
            R  L     A   YP G FS GAG+V  GGG   +      +  LR T GC LP+E+ +   +        A   L  T R +D   L I     +P   P   +  FT +K A +LLS F+EVI+LD +N  + DPA LL   +Y   G L+W D W +T +A E     +L VP    F  S ESG M  DK R W+ L+TA
Sbjct:  203 RSQLAAYSAAMPTYPRGAFS-GAGVVTVGGGMRYIIPAWIMVHQLRHT-GCKLPIEMWYPISEWPPQAVVDAFAKLGVTSRKLDFRGLNITAFKHDPKAPPHDTMARFT-IKVAAILLSRFQEVIYLDADNIPLKDPAHLLDGPEYNATGALLWQDFWDNT-VAPE--AEQMLGVPRSDWFRGSFESGQMVVDKARHWRGLLTA 400          
BLAST of jgi.p|Trimin1|131501 vs. uniprot
Match: A0A2V0P7B2_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P7B2_9CHLO)

HSP 1 Score: 89.7 bits (221), Expect = 5.040e-17
Identity = 73/205 (35.61%), Postives = 101/205 (49.27%), Query Frame = 1
Query:    1 RHWLRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDT-RVVDLYSL-IDPLTQEPVTRP-----VGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTA 594
            R  L G+  A   YP G FS G GIV  GGG   +      +  LR  LGC LP+E+ +   +   D   AA   L  T R +D   L I    ++P ++      +  FT +K A +LLS FEE+I+LD +N  + DP+ LL   +Y   G L+W D W +T       +  L +    PG  + ESG M  +KRR W+ LV A
Sbjct:  260 RSQLNGLLAAIPGYPHGTFS-GRGIVTVGGGMRYIVPAWMMVHQLRH-LGCRLPIEMWYPETEWPGDEAVAAFARLGVTSRKMDFRGLNITAFKEDPKSKSFDPNGMARFT-IKVAALLLSRFEEIIYLDADNVPLRDPSPLLDTPEYNATGALLWQDFWDNTMAPQAEQMLGLPRSEWYPG--SFESGQMVINKRRHWRGLVVA 459          
BLAST of jgi.p|Trimin1|131501 vs. uniprot
Match: A0A2K3DCG0_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DCG0_CHLRE)

HSP 1 Score: 87.0 bits (214), Expect = 2.800e-16
Identity = 77/222 (34.68%), Postives = 106/222 (47.75%), Query Frame = 1
Query:   40 YPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIA--HEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWAL---AKPLAARGTI---DGDKQMYGFAFAATGQ 681
            YP   FS G G+V  GGG   L      +  LR++ GC LPVEV     ++ +    AAL+ L    V  L  ++D L Q            +K A +LLSSF+EV+FLD++N A+ DP+ L    QY   G L W D W  +S+   HE   +   QVP        ESG M  DK R W+ L+ A  +    K  A   +     GDK+ + +A  A G+
Sbjct:   28 YPPAAFS-GRGVVMVGGGLHYLIPAWASLSVLRKS-GCHLPVEVWFPVAEQPSRPAVAALEGLGGVAVRTL-DVVD-LQQRGFA--------LKSAALLLSSFQEVLFLDSDNLAVRDPSPLFASPQYAATGALFWRDFWDRSSVPEIHEVLRFPNEQVPKV----TFESGQMVIDKARHWRGLLLAVYMNVYGKTFAELLSCYLGKGDKETFVYAMLAAGE 233          
BLAST of jgi.p|Trimin1|131501 vs. uniprot
Match: A0A8J4GP40_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GP40_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 2.970e-16
Identity = 71/213 (33.33%), Postives = 100/213 (46.95%), Query Frame = 1
Query:   61 SGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTA------WALAKPLAARGTIDGDKQMYGFAFAATGQ 681
            SG G+V  GGG   L      +  LR T GC LPVE+    E+  T    A  +AL D  V+        L Q+           VK A +LLSSF+EV+FLD++N  + DP  L   ++Y   G L+W D W  T+      + ++     P G  + ESG M  DK R W+ LV A       A+   L +     GDK+ + ++  ATG+
Sbjct:  328 SGRGVVMVGGGIRYLTPAWASLHVLRRT-GCKLPVELWFPVEEFPTP---AVEEALLDLGVMSRRLSARDLAQKGFG--------VKVAALLLSSFQEVLFLDSDNTVLRDPTFLFESEEYVSTGALLWPDYWDRTAAPEVAQILNISASRLPAG--SFESGEMVIDKARHWRGLVLAAYMNVYGAVFSELLSCYIGKGDKETFAYSMLATGE 526          
BLAST of jgi.p|Trimin1|131501 vs. uniprot
Match: A0A8J4CTC4_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CTC4_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 3.210e-16
Identity = 71/213 (33.33%), Postives = 100/213 (46.95%), Query Frame = 1
Query:   61 SGAGIVFCGGGASMLRQVMGQILYLRETLGCTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPVGSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWSDLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTA------WALAKPLAARGTIDGDKQMYGFAFAATGQ 681
            SG G+V  GGG   L      +  LR T GC LPVE+    E+  T    A  +AL D  V+        L Q+           VK A +LLSSF+EV+FLD++N  + DP  L   ++Y   G L+W D W  T+      + ++     P G  + ESG M  DK R W+ LV A       A+   L +     GDK+ + ++  ATG+
Sbjct:  328 SGRGVVMVGGGIRYLTPAWASLHVLRRT-GCKLPVELWFPVEEFPTP---AVEEALLDLGVMSRRLSARDLAQKGFG--------VKVAALLLSSFQEVLFLDSDNTVLRDPTFLFESEEYVSTGALLWPDYWDRTAAPEVAQILNISASRLPAG--SFESGEMVIDKARHWRGLVLAAYMNVYGAVFSELLSCYIGKGDKETFAYSMLATGE 526          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131501 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YM65_9STRA1.420e-166100.00Mannosyltransferase putative-domain-containing pro... [more]
A0A835YRK4_9STRA5.030e-13589.81Alpha-mannosyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A1X2GA01_9FUNG6.170e-1830.91Nucleotide-diphospho-sugar transferase n=1 Tax=Hes... [more]
F2UJ78_SALR51.580e-1729.91Apple domain-containing protein n=1 Tax=Salpingoec... [more]
UPI001B8A120F1.680e-1732.87hypothetical protein n=1 Tax=Bradyrhizobium diazoe... [more]
A0A0D2MT28_9CHLO3.600e-1737.25Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A2V0P7B2_9CHLO5.040e-1735.61Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A2K3DCG0_CHLRE2.800e-1634.68Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A8J4GP40_9CHLO2.970e-1633.33Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]
A0A8J4CTC4_9CHLO3.210e-1633.33Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_80contigContig_80:193586..194266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131501|gw1.80.6.1
CAZyGT71
BRITEko00000,ko00001,ko00002,ko01000,ko01003
KEGG ModuleM00074
KEGG Pathwayko00513,ko01100,map00513,map01100
KEGG koko:K05535
DescriptionMannosyltransferase putative
COG categoryS
Max annot lvl33154|Opisthokonta
EggNOG OGs28PD4@1|root,2QW0I@2759|Eukaryota,39Z10@33154|Opisthokonta
Evalue2.58e-18
Seed ortholog946362.XP_004990866.1
Hectar predicted targeting categoryother localisation
TranscriptId131823
TrackFilteredModels1
ProteinId131501
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131501gene_11727Tribonema minus UTEX_B_3156 geneContig_80 193586..194266 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11727_1exon_11727_1Tribonema minus UTEX_B_3156 exonContig_80 193586..194266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11727CDS_11727Tribonema minus UTEX_B_3156 CDSContig_80 193586..194266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131501Trimin1|131501|gw1.80.6.1Tribonema minus UTEX_B_3156 polypeptideContig_80 193586..194266 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11727 ID=mRNA_11727|Name=jgi.p|Trimin1|131501|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=681bp|location=Sequence derived from alignment at Contig_80:193586..194266- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGACACTGGCTGCGTGGCGTGCAGGATGCCCATGGTGCATACCCTGAAGG
GCAGTTCAGCAGCGGTGCCGGCATTGTCTTCTGCGGCGGGGGAGCCAGCA
TGCTGCGCCAGGTGATGGGGCAGATTCTCTATCTGCGGGAGACGCTGGGG
TGCACCTTGCCCGTCGAGGTCATGCACCTGGGGGAGGACGAAATGACCGA
CGGCTGGCGGGCAGCTCTTCAAGCTCTGCCCGACACACGCGTCGTCGACC
TCTACAGCCTCATAGACCCGCTCACTCAAGAGCCCGTGACGCGCCCTGTG
GGCTCCTTCACCCACGTCAAGCCCGCAGTGGTCCTGCTGAGCTCCTTCGA
GGAGGTCATCTTCCTAGACACCAACAACTACGCCATGATAGACCCCGCGG
AGCTGCTGCTCCGCGACCAGTACAAGCGCGACGGCTACCTCATGTGGTCC
GACCTCTGGCTCAGCACCAGCATCGCGCACGAGTACGCCGTCTACTCCCT
CCTCCAGGTCCCCCCCCCCCCCGGGTTCGAAAACAGCGAGTCGGGGGTCA
TGTACTGGGATAAGCGCCGCCGCTGGAAGGAGCTCGTGACCGCCTGGGCG
CTGGCGAAACCGCTCGCGGCGCGCGGCACCATAGACGGCGACAAGCAGAT
GTACGGCTTCGCCTTCGCGGCAACCGGCCAG
back to top

protein sequence of jgi.p|Trimin1|131501

>Trimin1|131501|gw1.80.6.1 ID=Trimin1|131501|gw1.80.6.1|Name=jgi.p|Trimin1|131501|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=227bp
RHWLRGVQDAHGAYPEGQFSSGAGIVFCGGGASMLRQVMGQILYLRETLG
CTLPVEVMHLGEDEMTDGWRAALQALPDTRVVDLYSLIDPLTQEPVTRPV
GSFTHVKPAVVLLSSFEEVIFLDTNNYAMIDPAELLLRDQYKRDGYLMWS
DLWLSTSIAHEYAVYSLLQVPPPPGFENSESGVMYWDKRRRWKELVTAWA
LAKPLAARGTIDGDKQMYGFAFAATGQ
back to top

mRNA from alignment at Contig_80:193586..194266-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11727 ID=mRNA_11727|Name=jgi.p|Trimin1|131501|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=681bp|location=Sequence derived from alignment at Contig_80:193586..194266- (Tribonema minus UTEX_B_3156 )
AGACACTGGCTGCGTGGCGTGCAGGATGCCCATGGTGCATACCCTGAAGG GCAGTTCAGCAGCGGTGCCGGCATTGTCTTCTGCGGCGGGGGAGCCAGCA TGCTGCGCCAGGTGATGGGGCAGATTCTCTATCTGCGGGAGACGCTGGGG TGCACCTTGCCCGTCGAGGTCATGCACCTGGGGGAGGACGAAATGACCGA CGGCTGGCGGGCAGCTCTTCAAGCTCTGCCCGACACACGCGTCGTCGACC TCTACAGCCTCATAGACCCGCTCACTCAAGAGCCCGTGACGCGCCCTGTG GGCTCCTTCACCCACGTCAAGCCCGCAGTGGTCCTGCTGAGCTCCTTCGA GGAGGTCATCTTCCTAGACACCAACAACTACGCCATGATAGACCCCGCGG AGCTGCTGCTCCGCGACCAGTACAAGCGCGACGGCTACCTCATGTGGTCC GACCTCTGGCTCAGCACCAGCATCGCGCACGAGTACGCCGTCTACTCCCT CCTCCAGGTCCCCCCCCCCCCCGGGTTCGAAAACAGCGAGTCGGGGGTCA TGTACTGGGATAAGCGCCGCCGCTGGAAGGAGCTCGTGACCGCCTGGGCG CTGGCGAAACCGCTCGCGGCGCGCGGCACCATAGACGGCGACAAGCAGAT GTACGGCTTCGCCTTCGCGGCAACCGGCCAG
back to top

Coding sequence (CDS) from alignment at Contig_80:193586..194266-

>mRNA_11727 ID=mRNA_11727|Name=jgi.p|Trimin1|131501|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=681bp|location=Sequence derived from alignment at Contig_80:193586..194266- (Tribonema minus UTEX_B_3156 )
AGACACTGGCTGCGTGGCGTGCAGGATGCCCATGGTGCATACCCTGAAGG
GCAGTTCAGCAGCGGTGCCGGCATTGTCTTCTGCGGCGGGGGAGCCAGCA
TGCTGCGCCAGGTGATGGGGCAGATTCTCTATCTGCGGGAGACGCTGGGG
TGCACCTTGCCCGTCGAGGTCATGCACCTGGGGGAGGACGAAATGACCGA
CGGCTGGCGGGCAGCTCTTCAAGCTCTGCCCGACACACGCGTCGTCGACC
TCTACAGCCTCATAGACCCGCTCACTCAAGAGCCCGTGACGCGCCCTGTG
GGCTCCTTCACCCACGTCAAGCCCGCAGTGGTCCTGCTGAGCTCCTTCGA
GGAGGTCATCTTCCTAGACACCAACAACTACGCCATGATAGACCCCGCGG
AGCTGCTGCTCCGCGACCAGTACAAGCGCGACGGCTACCTCATGTGGTCC
GACCTCTGGCTCAGCACCAGCATCGCGCACGAGTACGCCGTCTACTCCCT
CCTCCAGGTCCCCCCCCCCCCCGGGTTCGAAAACAGCGAGTCGGGGGTCA
TGTACTGGGATAAGCGCCGCCGCTGGAAGGAGCTCGTGACCGCCTGGGCG
CTGGCGAAACCGCTCGCGGCGCGCGGCACCATAGACGGCGACAAGCAGAT
GTACGGCTTCGCCTTCGCGGCAACCGGCCAG
back to top