mRNA_11626 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352080 vs. uniprot
Match: A0A835ZHA0_9STRA (CrcB-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHA0_9STRA) HSP 1 Score: 622 bits (1605), Expect = 5.070e-225 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 1
Query: 1 MLVPAFFDNCMGSMILGLLVAATSTIPKEGGALVLLTGLTTGFCGAYTTFSAWALQTDDLVVANPDEVAEGDPQPQVTGIIYICGGLACFIVVHRMGMDLGGVLTGLVERGAPHVKQVSAAAAHRARVKQGSAAAVHGGTAARCAGWAGGEARSLAACSRVWRALAITNAALLAAAVAALALALGLDDASWMRRRWWLSALFAVPGALLRFALARWLNAFRGGLFPLGTFAANMLGTICSALIAHAYSDYGTDWRDTACRAFAVGFCASLTTMSTLVNELAAIRADFGARHGLVYIGSSVILAEVLAGVIDGRWGSGGGL 960
MLVPAFFDNCMGSMILGLLVAATSTIPKEGGALVLLTGLTTGFCGAYTTFSAWALQTDDLVVANPDEVAEGDPQPQVTGIIYICGGLACFIVVHRMGMDLGGVLTGLVERGAPHVKQVSAAAAHRARVKQGSAAAVHGGTAARCAGWAGGEARSLAACSRVWRALAITNAALLAAAVAALALALGLDDASWMRRRWWLSALFAVPGALLRFALARWLNAFRGGLFPLGTFAANMLGTICSALIAHAYSDYGTDWRDTACRAFAVGFCASLTTMSTLVNELAAIRADFGARHGLVYIGSSVILAEVLAGVIDGRWGSGGGL
Sbjct: 1 MLVPAFFDNCMGSMILGLLVAATSTIPKEGGALVLLTGLTTGFCGAYTTFSAWALQTDDLVVANPDEVAEGDPQPQVTGIIYICGGLACFIVVHRMGMDLGGVLTGLVERGAPHVKQVSAAAAHRARVKQGSAAAVHGGTAARCAGWAGGEARSLAACSRVWRALAITNAALLAAAVAALALALGLDDASWMRRRWWLSALFAVPGALLRFALARWLNAFRGGLFPLGTFAANMLGTICSALIAHAYSDYGTDWRDTACRAFAVGFCASLTTMSTLVNELAAIRADFGARHGLVYIGSSVILAEVLAGVIDGRWGSGGGL 320
BLAST of jgi.p|Trimin1|352080 vs. uniprot
Match: A0A836C7N9_9STRA (CrcB-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7N9_9STRA) HSP 1 Score: 274 bits (701), Expect = 1.360e-86 Identity = 148/311 (47.59%), Postives = 195/311 (62.70%), Query Frame = 1
Query: 1 MLVPAFFDNCMGSMILGLLVAATSTIPKEGGALVLLTGLTTGFCGAYTTFSAWALQTDDLVVANPDEVAEGDPQPQVTGIIYICGGLACFIVVHRMGMDLGGVLTGLVERGAPHVKQVSAAAAHRARVKQGSAAAVHGGTAARCAGWAGGEARSLAACSRVWRALAITNAALLAAAVAALALALGLDDASWMRRRWWLSALFAVPGALLRFALARWLNAFRGGLFPLGTFAANMLGTICSALIAHAYSDYGTDWRDTACRAFAVGFCASLTTMSTLVNELAAIRADFGARHGLVYIGSSVILAEVLAGVID 933
+LVP+FFDN GSMILG LVAA++T+ K GGALVLLTG++ G CGAYTTFSAW LQT+ L++A +V PQPQ+ + YI +A FIV HR+G D+G +LTG V++ AP + + +AI N LL A L++ALG++D SW+ +R+WLS LFA+PGA LR+ALAR N FRGG FPLGTF AN+ GT+ AL+ H ++ +DW DTA RAF GFCASLTTMSTLVNELA +R D + G++Y+ S+VILA+ + G++
Sbjct: 133 LLVPSFFDNVAGSMILGFLVAASTTMSKGGGALVLLTGMSVGLCGAYTTFSAWTLQTNALLIAPTSDV----PQPQIAALCYIFASIATFIVAHRVGADVGALLTGAVQKAAPGISEGI---------------------------------------------IAIVNGVLLVATAIGLSIALGVNDNSWLEKRYWLSGLFAIPGASLRYALARQFNKFRGGRFPLGTFLANIGGTLACALVTHEFTK-ASDWDDTAARAFVTGFCASLTTMSTLVNELAILRRDHSVQDGVIYLASTVILAQFIVGMVS 393
BLAST of jgi.p|Trimin1|352080 vs. uniprot
Match: D7G2L8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2L8_ECTSI) HSP 1 Score: 109 bits (272), Expect = 1.400e-23 Identity = 95/299 (31.77%), Postives = 141/299 (47.16%), Query Frame = 1
Query: 61 AATSTIPKEGGALVLLTGLTTGFCGAYTTFSAWALQTDDLVVANPDEVAEGDPQPQVTGIIYICGGLACFIVVHRMGMDLGGVLTGLVERGAPHVKQVSAAAAHRARVKQGSAAAVHGGTAARCAGWAGGEARSLAACSRVWRALAITNAALLAAAVAALALALGLDDASWMRRRWWLSALFAVPGALLRFALARWLNA-FRGGLFPLGTFAANMLGTICSALIAHAYSDYGTD--------WRDTACRAFAVGFCASLTTMSTLVNELAAIRADFGARHGLVYIGSSVILAEVLAGVI 930
A S+ +E + GLT GFCG+YTT+S W L+ + G P + I+ + LA F G D+ +KQ+ A+ R +++ + GG A AGG++ ++ +L A LA+ LG+D+ +W RR WL+ +FA GAL RF L+R LN+ RGG FPLGTF AN+LG++ AL S YGT W + A +AF GF SLTTMST ++E+ R +Y+ ++ I A+ L ++
Sbjct: 116 ALASSPDRETIPDAMYAGLTVGFCGSYTTYSGWNLRIARAALGQ----VSGAPSGAIVTIVSMATSLAFFAACFSAGCDV--------------MKQI-ASHGRRLNIRR-----MLGGGAL-----AGGDSDAVR-----------NTLGMLGAVYVLLAVLLGVDN-NWSRRIDWLACIFAPFGALSRFFLSRQLNSRLRGGAFPLGTFTANVLGSLVMAL-----SFYGTKNSSSLTSGWSNVAIKAFQTGFLGSLTTMSTFMSEVVGHRDRHTPSASYIYLAATAIAAQALVLIV 368
BLAST of jgi.p|Trimin1|352080 vs. uniprot
Match: R1B6T8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B6T8_EMIHU) HSP 1 Score: 85.9 bits (211), Expect = 5.040e-15 Identity = 102/297 (34.34%), Postives = 134/297 (45.12%), Query Frame = 1
Query: 25 NCMGSMILGLL---VAATSTIPKEG-------GAL------------VLLTGLTTGFCGAYTTFSAWALQTDDLVVANPDEVAEGDPQPQVTGIIYICGGLACFIVVHRMGMDLGGVLTGLVERGAPHVKQVSAAAAHRARVKQGSAAAVHGGTAARCAGWAGGEARSLAACSRVWRALAITNAALLAAAVAALALALGLDD-ASWMRRRWWLSALFAVPGALLRFALARWLNAFRGGLFPLGTFAANMLGTICSALIAHAYSDYGTDWRDTA--CRAFAVGFCASLTTMSTLVNEL 840
N +G+ +LGLL AA +P E GA +L GL TGFCG TTFS+W LV A D V I++ G LG + L+ A H+ Q +A A +G ++ HG ++ A AGG + S AA R ALA+ A V L+L G+D A + RR++L LFA G LLR LA LNA R FPLGTF+ N+L AL+ A D D A RA +GFC SL+T+ST +E+
Sbjct: 121 NIIGTFLLGLLCPGAAAARLLPAEADDRRRHIGAAGLAGRPAARVNAAILLGLRTGFCGCLTTFSSWNQAMVQLVAAEKDGV----------------------IIMGLKGALLGYAIGLLLPIVALHLGQAAALYAGLRLTPRGRSS--HGADPSQAA--AGGCSASTAAWWRCGAALALLLAVAAELGVG-LSLIPGMDGWADELTRRFFLGLLFAPAGVLLRRGLALKLNA-RCPPFPLGTFSGNVLSCAVMALLYEAIDDDDDDAPHFALVARAVGLGFCGSLSTVSTFADEV 389
BLAST of jgi.p|Trimin1|352080 vs. uniprot
Match: A0A0C4E6D1_MAGP6 (Uncharacterized protein n=1 Tax=Magnaporthiopsis poae (strain ATCC 64411 / 73-15) TaxID=644358 RepID=A0A0C4E6D1_MAGP6) HSP 1 Score: 74.3 bits (181), Expect = 3.220e-11 Identity = 94/313 (30.03%), Postives = 137/313 (43.77%), Query Frame = 1
Query: 46 LGLLVAATSTIPKEGGALVLLTGLTTGFCGAYTTFSAWALQTDDLVVAN---PDEVAEGDPQPQVTGIIYICGGLACFIVVHRMGMDLGGVLTGLVERGAPHVKQVSAAAAHRARVKQGSAAAVHGGTAARCAGWAGGEARSLAACSRVWRALAITNAALLAAAVAALALALGLDDASWMRRRWWLSALFAVPGALLRFALARWLNAFRGGLFPLGTFAANMLGTICSAL---IAHAYSDYGTDWRDTACRAFAVGFCASLTTMSTLVNELAAIRADFGARHGLVYIGSSVILAEVLAGVIDGR--WGSGGGL 960
+G + T+ P + L GLTTGFCG++T+FS++ ++ L + N P ++ + G ++ +++ + + L G+ +G AH A+ AA AR + R LA ++ L+ A VAA A GL +W+R + L+ FA G L RF L+ LN FPLGTF AN+ GT A+ +AHA G + GFC LTT+ST V ELA + A R VY SS+ +A +LA I G W GG L
Sbjct: 113 IGAMTTTTTPAPGKTKKTPLYVGLTTGFCGSFTSFSSF-IRDAFLALVNGLAPPGLSNSNNNGANGGQSFMA---FLAVILIAVSLSLAGLFSG----------------AHLAQAALKPTAAF---------------ARVRSVLDRTVMVLAWSSW-LVVAVVAATTTAPGLVSDAWLRGQVLLALAFAPLGCLARFYLSTALNGRLSPSFPLGTFVANVAGTAMLAVAWDLAHAR--LGGVVGCLVLQGVEDGFCGCLTTVSTWVAELAEL-ARRRTRDAYVYGASSIAVALLLAIAIMGGLVWSHGGDL 386
BLAST of jgi.p|Trimin1|352080 vs. uniprot
Match: A0A3N2Q5Y4_9PEZI (CrcB-like protein n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2Q5Y4_9PEZI) HSP 1 Score: 72.0 bits (175), Expect = 1.850e-10 Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 1
Query: 601 LFAVPGALLRFALARWLNAFRGGLFPLGTFAANMLGTICSALIAHAY----SDYGTDWRDTACRAFAVGFCASLTTMSTLVNELAAIRADFGARHGLVYIGSSVILAEVLAGVIDGRWGSGGG 957
+FA G LLRF L+ WLN R FP+GTF AN+LGT+ L+ Y + G R VGFC SLTT+S+ + E+AA+ +G+V + ++ L V+ G + RWG G G
Sbjct: 263 VFAPVGCLLRFELSAWLN-MRVPSFPVGTFVANILGTV---LLGMGYDLMVAPVGGVLECQVLRGIEVGFCDSLTTLSSWIAEMAALGKRHAVTYGVVSVSTAFSLLTVIMGAM--RWGHGFG 379
BLAST of jgi.p|Trimin1|352080 vs. uniprot
Match: A0A2C5ZU45_9HYPO (Uncharacterized protein n=1 Tax=Cordyceps sp. RAO-2017 TaxID=2004951 RepID=A0A2C5ZU45_9HYPO) HSP 1 Score: 68.2 bits (165), Expect = 2.690e-10 Identity = 57/137 (41.61%), Postives = 70/137 (51.09%), Query Frame = 1
Query: 571 WMRRRWW-----LSALFAVPGALLRFALARWLNAFRGGLFPLGTFAANMLGTICSAL---IAHAYSDYGTDWRDTACRAFAVGFCASLTTMSTLVNELAAIRADFGARHGLVYIGSSVILAEVLAGVIDG--RWGSG 951
W R +W L+ +FA PG LLRF LA LN R FPLGTFAAN+ G A+ IAH G + GFC LTT+ST V ELAA+R H +Y +SV+++ L VI G RW G
Sbjct: 19 WPPRDFWRGRATLALVFAPPGCLLRFYLAALLNGRRPA-FPLGTFAANVFGCAVLAMAWDIAHV--PVGGYVGCQVLQGIEDGFCGCLTTISTWVAELAALRR----LHAYLYGAASVLVSFALMVVIMGGLRWTDG 148
BLAST of jgi.p|Trimin1|352080 vs. uniprot
Match: A0A066XSF4_COLSU (Putative CrcB-like protein n=1 Tax=Colletotrichum sublineola TaxID=1173701 RepID=A0A066XSF4_COLSU) HSP 1 Score: 70.9 bits (172), Expect = 5.890e-10 Identity = 83/289 (28.72%), Postives = 116/289 (40.14%), Query Frame = 1
Query: 112 GLTTGFCGAYTTFSAWALQTDDLVVAN--PDEVAEGDPQPQVTGIIYICGGLACFIVVHRMGMDLGGVLTGLVERGAPHVKQVSAAAAHRARVKQGSAAAVHGGTAARCAGWAGGEARSLAACSRVWRALAITNAALLAAAVAALALALGLDDASWMRRRWWLSALFAVPGALLRFALARWLNAFRGGLFPLGTFAANMLGTICSAL---IAHAYSDYGTDWRDTACRAFAVGFCASLTTMSTLVNELAAIRADFGARHGLVYIGSSVILAEVLAGVIDG--RWGSGGG 957
GL TGFCG++T+FS++ ++ L N PD P P+ G ++ A +V+ + + L + G A + S AA R A + G A W G ++ WR A+ S +FA G L RF ++RWLN R FPLGTF N+ G + + HA G + GFC LTT+ST V EL A+R RH VY+ SSV+ + V+ G RW G G
Sbjct: 236 GLATGFCGSFTSFSSF-IRDVFLAATNDLPDAGGSAPPAPRNGGYSFMA---ALAVVLTTVSLSLSALTVGAHLAAALEPENPSNAAYPLGRKILDRGAVLLGWGA-----WVGAVILAVFPPRDAWRGQAV------------------------------FSLVFAPAGCLARFYVSRWLNP-RVPSFPLGTFVVNVAGVAVLGMCWDLGHA--GIGGVVGCQVLQGVEDGFCGCLTTVSTWVAELTALRR----RHAYVYLASSVVAGFAVLVVVMGPMRWTHGFG 478
BLAST of jgi.p|Trimin1|352080 vs. uniprot
Match: A0A0C7MMW8_9SACH (LALA0S02e09340g1_1 n=1 Tax=Lachancea lanzarotensis TaxID=1245769 RepID=A0A0C7MMW8_9SACH) HSP 1 Score: 70.1 bits (170), Expect = 7.000e-10 Identity = 51/130 (39.23%), Postives = 70/130 (53.85%), Query Frame = 1
Query: 580 RRWWLSALFAVPGALLRFALARWLN-AFRGGLFPLGTFAANMLGTICSALIAHAYSDYGTDWRD--------TACRAFAVGFCASLTTMSTLVNELAAIRADFGARHGLVYIGSSVILAEVLAGVIDGRW 942
R W LSA+FA PGA+LR+ L++ LN FR FP+GTFAAN++GT+ A+I +D T A GFC SLTT+ST VNE + R ++Y S+ ++ L VI G +
Sbjct: 219 RFWTLSAVFAFPGAVLRYVLSKQLNHRFRH--FPMGTFAANVIGTLILAIITLVTKGKRSDGSGIIHSNTAKTVVVALGNGFCGSLTTVSTFVNECQILPF----RRTMIYYFVSIFVSFGLVVVIVGSY 342
BLAST of jgi.p|Trimin1|352080 vs. uniprot
Match: A0A1G4JM95_9SACH (LAFA_0F04654g1_1 n=1 Tax=Lachancea sp. CBS 6924 TaxID=433476 RepID=A0A1G4JM95_9SACH) HSP 1 Score: 69.7 bits (169), Expect = 9.440e-10 Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 1
Query: 580 RRWWLSALFAVPGALLRFALARWLNAFRGGLFPLGTFAANMLGTICSALIAHAYSDYGTD--------WRDTACRAFAVGFCASLTTMSTLVNELAAIRADFGARHGLVYIGSSVILAEVLAGVIDGRW 942
R W LSA+FA PGA+LR+ L++ LN R FP+GTFAAN+LGT+ A+I +D +T A GFC LTT+ST +NE + R ++Y S+ ++ L VI G +
Sbjct: 219 RSWTLSAIFAFPGAVLRYFLSKQLN-HRIKHFPMGTFAANVLGTLVLAVITLVTKGKRSDDSAIIHSKTAETVVIALGNGFCGGLTTVSTFINECQILPF----RRTMIYYFVSIFVSFSLVVVILGSY 342 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352080 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11626 ID=mRNA_11626|Name=jgi.p|Trimin1|352080|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=963bp|location=Sequence derived from alignment at Contig_107:520963..524181- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGGTGCCGGCCTTCTTCGACAACTGCATGGGCTCAATGATACTTGGback to top protein sequence of jgi.p|Trimin1|352080 >Trimin1|352080|estExt_Genemark1.C_Ctg_1070072 ID=Trimin1|352080|estExt_Genemark1.C_Ctg_1070072|Name=jgi.p|Trimin1|352080|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=321bp MLVPAFFDNCMGSMILGLLVAATSTIPKEGGALVLLTGLTTGFCGAYTTFback to top mRNA from alignment at Contig_107:520963..524181- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11626 ID=mRNA_11626|Name=jgi.p|Trimin1|352080|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3219bp|location=Sequence derived from alignment at Contig_107:520963..524181- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_107:520963..524181- >mRNA_11626 ID=mRNA_11626|Name=jgi.p|Trimin1|352080|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=963bp|location=Sequence derived from alignment at Contig_107:520963..524181- (Tribonema minus UTEX_B_3156 )back to top |