mRNA_11539 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180799
Unique NamemRNA_11539
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|180799 vs. uniprot
Match: A0A835YXT3_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT3_9STRA)

HSP 1 Score: 661 bits (1705), Expect = 3.940e-240
Identity = 323/324 (99.69%), Postives = 324/324 (100.00%), Query Frame = 1
Query:    1 MNAAATVQQPSYTVRGFGIIKRLGSGATATVYEACTEKNEVVALKVVMRDRNTYMRELRVLKEMRHDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLSGLVLWGSEAAQCMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRPQGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPFMGQNLVEKIMYGAPDSHRSAPVVCCEEESNLAHLVNWGLSKPARDRPSVDDVLHHPWMANAEDLRARDAACHLFSPSSSEAGSNVSAHSNSIESSTHIGVVPSMSPSIFLAKYTVV 972
            MNAAATVQQPSYTVRGFGIIKRLGSGATATVYEACTEKNEVVALKVVMRDRNTYMRELRVLKEMRHDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLSGLVLWGSEAAQCMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRPQGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPFMGQNLVEKIMYGAPDSHRSAPVVCCEEESNLAHLVNWGLSKPARDRPSVDDVLHHPWMANAEDLRARDA+CHLFSPSSSEAGSNVSAHSNSIESSTHIGVVPSMSPSIFLAKYTVV
Sbjct:    1 MNAAATVQQPSYTVRGFGIIKRLGSGATATVYEACTEKNEVVALKVVMRDRNTYMRELRVLKEMRHDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLSGLVLWGSEAAQCMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRPQGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPFMGQNLVEKIMYGAPDSHRSAPVVCCEEESNLAHLVNWGLSKPARDRPSVDDVLHHPWMANAEDLRARDASCHLFSPSSSEAGSNVSAHSNSIESSTHIGVVPSMSPSIFLAKYTVV 324          
BLAST of jgi.p|Trimin1|180799 vs. uniprot
Match: A0A836CE44_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE44_9STRA)

HSP 1 Score: 234 bits (596), Expect = 2.040e-71
Identity = 124/274 (45.26%), Postives = 174/274 (63.50%), Query Frame = 1
Query:   46 GFGIIKRLGSGATATVYEACTEKNEVVALKVVMRDRNTYMRELRVLKEMRHDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLSGLVLWGSEAAQCMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRPQGTPAFMSPEAYRGHGG--TTACDVWSLAATIFCVVRGHPPFM--GQNLVEKIMYGAPDSHRSAPVVC-------CEEESNLAHLVNWGLSKPARDRPSVDDVLHHPWMANAEDLRARDAA 834
            G+ +++R+G G T +VY A  E    VALKVV  D   Y RE+R L+ ++H  IV++  ++  +  +  GP+LIVMEL  WGSL+G+VL  +EAA  + +VA ALQ+IH +GY HGD+KP N+LR   G +K+CDFGCC++     +T   RP+GTPAFM PEA++G G   T A D W LAAT FC+VRG PPF   G+ L + I+YG     R+    C        ++E++LA+ V WGL+K  R RPS++ VL HPW+  A  L+  D +
Sbjct:   52 GYRVVRRIGGGGTGSVYAARDEYGADVALKVVANDAAAYGREVRALQALQHRNIVQMVDTQGGQEGK--GPYLIVMELAEWGSLAGVVLRSAEAAAYVAEVASALQFIHERGYAHGDVKPGNILRFADGTVKLCDFGCCERPEAAAETR-GRPRGTPAFMPPEAFQGTGSGWTAAVDSWGLAATSFCLVRGRPPFSVAGRGLFDSILYG-----RANLTACQGERGNDADDEADLANFVAWGLTKAPRGRPSMEQVLQHPWLTKAAALQHSDCS 317          
BLAST of jgi.p|Trimin1|180799 vs. uniprot
Match: A0A835Z3R1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R1_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.990e-31
Identity = 86/269 (31.97%), Postives = 135/269 (50.19%), Query Frame = 1
Query:   40 VRGFGIIKRLGSGATATVYEACTEKNEVVALKVVMRDR--NTYMRELRVLKEMRHDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLSGLVLWGSEAAQCMR---DVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRPQGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPFMGQNLV--EKIMYGAPDSHRSAPVVCC---------EEESNLAHLVNWGLSKPARDRPSVDDVLHHPWM 798
            V  F I   +G+G+TA V+E  ++ +  VA+K+V + +   +  RE+  L++++H  IV L     +    +     +V EL   GSL G+V+    + QC     D   AL Y+H +GY+H D+KPAN+L    G+ K+ DFGC  +++  D     +  GTPAFM+PE +     TTA DVWSL  T+  VV G  PF  + LV  + +MY +P    +    C          ++ S   H    G  K    R +++ +  H W+
Sbjct:    7 VNEFSITGHMGTGSTARVFECSSDVHGKVAMKMVYKSKAKESLHREIMALQDLKHKNIVNLLVVINDP---RLDVAFLVEELATKGSLVGVVM--KTSLQCQHVASDTMSALTYMHSRGYVHRDVKPANILIMSDGKAKLTDFGCAIRVS--DCLTRAKFMGTPAFMAPELFSTGIITTAIDVWSLVGTMHHVVYGSLPFGAEGLVLSQSVMYSSPAMGTTMSPRCLKMMNENWTNDDISRFKHFCKEGFRKDPDKRITLEKLAQHDWL 268          
BLAST of jgi.p|Trimin1|180799 vs. uniprot
Match: A0A835ZKY0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKY0_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.140e-30
Identity = 75/189 (39.68%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  346 VAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRP---QGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPFM---GQN-LVEKIMYGAP----------------------DSHRSAP--------VVCCEEESNLAHLVNWGLSKPARDRPSVDDVLHHPWMA 801
            VA AL  +H  GY H D+KP NL+R   G +K+ DFG   ++     +    P    GTPAFMSPEA  G GGT A DVWSL AT+  +V G  PF    G+  L E+IMYG+P                      +S   AP        +    E +NL HL+ WGLSK    RPS++  L HPW A
Sbjct:    1 VASALLAVHASGYAHNDVKPGNLMRTRSGSVKLGDFGSATRLPGSPASCAAPPAAAHGTPAFMSPEACSGRGGTEASDVWSLTATLSALVFGRLPFACDGGEGALAERIMYGSPRYDDGDDDEWGXXXXXXXXXXXESRDGAPDRGGRGGGLRDAHERANLLHLLGWGLSKLPAARPSLEQFLAHPWAA 189          
BLAST of jgi.p|Trimin1|180799 vs. uniprot
Match: A0A835ZCT2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.190e-29
Identity = 75/200 (37.50%), Postives = 114/200 (57.00%), Query Frame = 1
Query:   37 TVRGFGIIKRLGSGATATVYEACTEKNEVVALKVVMRD--RNTYMRELRVLKEMR-HDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLSGLVLWGSEAAQCMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRP-QGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPF 624
            +V  + +  RLG+G TA VYE  + +    ALKV+ +   R +  REL  L+ ++ H  I+ LF   +++   K+    +V E+   GSL G+++ G E  +   ++   L ++H KG+IH D+KPAN+LR   G  K+ DFGCC ++    DT   +   GTPAFM+PE ++    T A DVWS A+T+  VV G  PF
Sbjct:    2 SVNDYVVSGRLGAGVTAQVYECHSPQYGKAALKVIEKSTGRESLHRELMALQALKDHSNIISLFSIIDDQ---KSDITWLVEEMAERGSLVGVMMSGMECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPF 198          
BLAST of jgi.p|Trimin1|180799 vs. uniprot
Match: A0A2K1JY57_PHYPA (Protein kinase domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JY57_PHYPA)

HSP 1 Score: 125 bits (314), Expect = 4.370e-29
Identity = 95/274 (34.67%), Postives = 134/274 (48.91%), Query Frame = 1
Query:   64 RLGSGATATVYEACTEKNE-VVALKVVMRDRNTYM-------------RELRVLKEMRHDRIVKLFRSEENESYRKTGPFLIVME-------LEPWGSLSGLVLWGSEAAQ-CMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRPQGTPAFMSPEAYRGHGGT----TACDVWSLAATIFCVVRGHPPFMGQNL---VEKIMYGAPDSHRSAPVVCCEEES-NLAHLVNWGLSKPARDRPSVDDVLHHPW 795
            ++G+G+   V    ++K+E + A+K+V + R   M             RE+ +LK + H  +VKL+   E           +VME        E  GS  G+   G  AA+ C RDV   L Y+H    IHGDIKP N LR   G +K+CDFGC +    D+D ++R P GTP F +PE   G  G+       DVW+L  T++C+V G  PFMG  L    EKI+        + P++  E  +  LA L+   L K AR R S+     HPW
Sbjct:  131 KIGTGSFGKVVLHQSKKDEKLYAIKIVNKSRLRRMKVSPSETAMMDVLREVAILKRVDHPNVVKLY---EVIXXXXXXXXXMVMEHVEGKSIFEGCGSPGGI---GEAAARKCFRDVVAGLSYLHNHNIIHGDIKPENCLRSVDGSVKICDFGCSRTFEGDNDELWRSP-GTPVFTAPECCSGLTGSYYRGRQADVWALGCTLYCMVMGRYPFMGDTLPSIYEKIV--------NQPLLVPEATNPELADLLRGLLCKDARKRFSLAVAAAHPW 389          
BLAST of jgi.p|Trimin1|180799 vs. uniprot
Match: A0A836CFM8_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM8_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.280e-27
Identity = 84/271 (31.00%), Postives = 134/271 (49.45%), Query Frame = 1
Query:   64 RLGSGATATVYEACTEKNEVVALKVVMRDRN--TYMRELRVLKEMR-HDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLSGLVLWGSEAAQCMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATD-DDTVFRRPQGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPFMGQ-------------NLVEKIMYGAP---DSHRSAPVVCCEEE------SNLAHLVNWGLSKPARDRPSVDDVLHHPWM 798
            RLG GATA V+E  + +    ALK++ +     +  RE+  L+ ++ H  I+ L+   ++ +   T    +V+E+   GSL G+++ G E  +   D+   L ++H KG++H D+KPAN++R   G  K+ DFGCC ++A    +   R   GTPAFM+PE ++    T A DVWSLA+T+  VV G  PF                ++ + IMY  P   ++ RS  +   E        +   H    GL K    R ++     H W+
Sbjct:   58 RLGRGATAQVFECHSPQFGKAALKILEKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDIT---CLVVEMAERGSLVGVMVSGLECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWL 325          
BLAST of jgi.p|Trimin1|180799 vs. uniprot
Match: UPI0002C2E910 (G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X1 n=2 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C2E910)

HSP 1 Score: 119 bits (299), Expect = 2.560e-26
Identity = 83/257 (32.30%), Postives = 129/257 (50.19%), Query Frame = 1
Query:   67 LGSGATATVYEAC-TEKNEVVALKVVMRDRNTYMRELRVLKEMRHDRIVKLF---RSEENESYRKTGPFLIVMELEPWGSLSGLV-LWGSEAAQCMR----DVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRPQGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPFMGQNLVEKIMYGAPDSHRSAPVVCCEEESNLAHLVNWGLSKPARDRPSVDDVLHHPWMANAE 810
            +GSGA   VY A  TE  E++A+K           E+R+L+ + H +IV+     R EE+E+        +++E  P GS+  L+  +G  +   ++     + +AL+YIH KG IHGDIK AN+L    GRIK+ DFG  K+ A       R   GTP +M+PE  RG G   + D+WS+  T+  +  G+PP+  Q       +    + +S P +     S     ++  L K    RPS  ++L HP++   E
Sbjct:   21 IGSGAFGRVYMAMNTESGELIAVKEA--HTKVLQEEVRLLETLSHPKIVRCLGIEREEEDET------LTMLLEYVPGGSIQSLLEKFGPFSLPVIKRFTKQLLLALEYIHIKGIIHGDIKGANILVGSKGRIKLADFGTSKQAAISGSKPMR---GTPYWMAPEVIRGTGHDFSADIWSVGCTVIEMATGNPPWNQQFETIAAFFYCVGTSKSHPPIPEHLSSAAKDFLHECLQKEPTGRPSASELLKHPFLTGKE 266          
BLAST of jgi.p|Trimin1|180799 vs. uniprot
Match: A9S9C0_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S9C0_PHYPA)

HSP 1 Score: 114 bits (284), Expect = 4.450e-26
Identity = 79/216 (36.57%), Postives = 111/216 (51.39%), Query Frame = 1
Query:   64 RLGSGATATVYEACTEKNE-VVALKVVMRDRNTYM-------------RELRVLKEMRHDRIVKLFRSEENESYRKTGPFLIVME-------LEPWGSLSGLVLWGSEAAQ-CMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRPQGTPAFMSPEAYRG--HGGTTACDVWSLAATIFCVVRGHPPFMGQNL 639
            ++G+G+   V    ++K+E + A+K+V + R   M             RE+ +LK + H  +VKL+   E           +VME        E  GS  G+   G  AA+ C RDV   L Y+H    IHGDIKP N LR   G +K+CDFGC +    D+D ++R P GTP F +PE   G  + G  A DVW+L  T++C+V G  PFMG  L
Sbjct:   27 KIGTGSFGKVVLHQSKKDEKLYAIKIVNKSRLRRMKVSPSETAMMDVLREVAILKRVDHPNVVKLY---EVIXXXXXXXXXMVMEHVEGKSIFEGCGSPGGI---GEAAARKCFRDVVAGLSYLHNHNIIHGDIKPENCLRSVDGSVKICDFGCSRTFEGDNDELWRSP-GTPVFTAPECCSGIYYRGRQA-DVWALGCTLYCMVMGRYPFMGDTL 234          
BLAST of jgi.p|Trimin1|180799 vs. uniprot
Match: D8SKL3_SELML (Protein kinase domain-containing protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SKL3_SELML)

HSP 1 Score: 113 bits (282), Expect = 1.110e-25
Identity = 78/225 (34.67%), Postives = 112/225 (49.78%), Query Frame = 1
Query:  166 RELRVLKEMRHDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLSGLV--LWGSEAAQCMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATDDDTVFRRPQGTPAFMSPEAYRG------HGGTTACDVWSLAATIFCVVRGHPPFMGQNL---VEKIMYGAPDSHRSAPVVCCEEESNLAHLVNWGLSKPARDRPSVDDVLHHPWMANA 807
            RE++V+K +RH  IV+L    ++    +    L  +E +     SG    L  S A +  RD+   L Y+H    IHGDIKP NL+    GRIK+ DFG  +    DDD + RR  GTP F +PE  +G      HG   A DVW+L  T++C+V G  PF+G+N     +KI+        S P      + +L +L+   L K    R ++D    HPW+  A
Sbjct:   62 REVKVMKHLRHPNIVRLIEVIDDPECDQLYMVLEYIEGQRMFKQSGPPGGLGESTARRYFRDIVAGLMYLHNNKVIHGDIKPENLMITAEGRIKIGDFGISRTFEGDDD-LLRRSPGTPVFTAPECCKGISRMAYHG--KAADVWALGVTLYCMVTGQYPFVGENFQDTYDKIV----QQELSVPPGL---DPDLQNLLEGLLCKDPDQRMTLDAASCHPWLLKA 276          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180799 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXT3_9STRA3.940e-24099.69Kinase-like domain-containing protein n=2 Tax=Trib... [more]
A0A836CE44_9STRA2.040e-7145.26Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835Z3R1_9STRA2.990e-3131.97Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZKY0_9STRA1.140e-3039.68Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZCT2_9STRA3.190e-2937.50Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A2K1JY57_PHYPA4.370e-2934.67Protein kinase domain-containing protein n=3 Tax=P... [more]
A0A836CFM8_9STRA3.280e-2731.00Kinase-like domain-containing protein n=2 Tax=Trib... [more]
UPI0002C2E9102.560e-2632.30G-type lectin S-receptor-like serine/threonine-pro... [more]
A9S9C0_PHYPA4.450e-2636.57Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
D8SKL3_SELML1.110e-2534.67Protein kinase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_228contigContig_228:145457..146431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180799|e_gw1.228.20.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
KEGG koko:K00908,ko:K07359
EC2.7.11.17
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030587,GO:0031156,GO:0032502,GO:0035556,GO:0036211,GO:0043170,GO:0043207,GO:0043412,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0045595,GO:0046777,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0071704,GO:0090702,GO:0099120,GO:0099134,GO:0099135,GO:0099136,GO:0099139,GO:0140096,GO:1901261,GO:1901564,GO:2000241
Descriptionbelongs to the protein kinase superfamily
COG categoryT
Max annot lvl35493|Streptophyta
EggNOG OGsKOG0585@1|root,KOG0585@2759|Eukaryota,37RDJ@33090|Viridiplantae,3GGWE@35493|Streptophyta
Evalue7.17e-30
Seed ortholog3218.PP1S58_96V6.1
Hectar predicted targeting categoryother localisation
TranscriptId181121
TrackFilteredModels1
ProteinId180799
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180799gene_11539Tribonema minus UTEX_B_3156 geneContig_228 145457..146431 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11539_1exon_11539_1Tribonema minus UTEX_B_3156 exonContig_228 145457..146431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11539CDS_11539Tribonema minus UTEX_B_3156 CDSContig_228 145457..146431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180799Trimin1|180799|e_gw1.228.20.1Tribonema minus UTEX_B_3156 polypeptideContig_228 145457..146431 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11539 ID=mRNA_11539|Name=jgi.p|Trimin1|180799|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=975bp|location=Sequence derived from alignment at Contig_228:145457..146431+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCAGCCGCAACAGTCCAACAACCCTCGTATACTGTGCGAGGATT
TGGAATCATCAAGAGATTAGGATCTGGAGCGACAGCAACTGTGTATGAGG
CTTGCACTGAGAAAAATGAGGTAGTGGCACTGAAGGTGGTGATGCGCGAT
AGAAACACGTACATGCGAGAACTGAGAGTACTGAAGGAGATGCGACACGA
CAGGATTGTCAAGCTTTTCCGTTCTGAAGAGAATGAAAGCTACAGGAAAA
CAGGTCCATTCTTGATCGTGATGGAGCTTGAGCCGTGGGGATCGCTCTCC
GGCCTGGTTCTGTGGGGATCCGAAGCCGCGCAGTGCATGCGAGACGTTGC
CATCGCGCTGCAGTACATTCACCGCAAGGGGTACATTCATGGAGATATTA
AGCCCGCTAATCTCCTGAGGGATGGCTGTGGCAGAATCAAAGTCTGCGAT
TTTGGATGCTGCAAGAAGATTGCGACTGATGACGACACTGTATTTCGCCG
TCCACAGGGGACCCCCGCCTTCATGTCCCCCGAGGCCTACCGAGGGCACG
GTGGCACAACAGCCTGCGACGTGTGGTCACTCGCGGCTACAATCTTCTGC
GTAGTTCGAGGTCATCCTCCTTTCATGGGGCAGAACTTGGTAGAGAAGAT
CATGTATGGCGCGCCCGATTCCCATAGGTCAGCCCCTGTTGTCTGCTGTG
AAGAAGAGTCCAACCTGGCGCACCTGGTGAACTGGGGGTTGTCCAAACCT
GCCAGGGACAGGCCTTCAGTGGATGATGTTCTGCACCATCCATGGATGGC
AAATGCGGAGGATTTGCGGGCTCGGGACGCAGCATGTCACCTGTTTTCTC
CGTCCTCATCTGAAGCCGGGTCGAATGTGTCTGCTCACTCAAACTCAATT
GAGTCCAGCACCCACATCGGGGTTGTGCCTTCTATGTCCCCTTCAATTTT
CCTTGCGAAGTATACAGTGGTGTAG
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protein sequence of jgi.p|Trimin1|180799

>Trimin1|180799|e_gw1.228.20.1 ID=Trimin1|180799|e_gw1.228.20.1|Name=jgi.p|Trimin1|180799|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=325bp
MNAAATVQQPSYTVRGFGIIKRLGSGATATVYEACTEKNEVVALKVVMRD
RNTYMRELRVLKEMRHDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLS
GLVLWGSEAAQCMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCD
FGCCKKIATDDDTVFRRPQGTPAFMSPEAYRGHGGTTACDVWSLAATIFC
VVRGHPPFMGQNLVEKIMYGAPDSHRSAPVVCCEEESNLAHLVNWGLSKP
ARDRPSVDDVLHHPWMANAEDLRARDAACHLFSPSSSEAGSNVSAHSNSI
ESSTHIGVVPSMSPSIFLAKYTVV*
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mRNA from alignment at Contig_228:145457..146431+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11539 ID=mRNA_11539|Name=jgi.p|Trimin1|180799|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=975bp|location=Sequence derived from alignment at Contig_228:145457..146431+ (Tribonema minus UTEX_B_3156 )
ATGAACGCAGCCGCAACAGTCCAACAACCCTCGTATACTGTGCGAGGATT TGGAATCATCAAGAGATTAGGATCTGGAGCGACAGCAACTGTGTATGAGG CTTGCACTGAGAAAAATGAGGTAGTGGCACTGAAGGTGGTGATGCGCGAT AGAAACACGTACATGCGAGAACTGAGAGTACTGAAGGAGATGCGACACGA CAGGATTGTCAAGCTTTTCCGTTCTGAAGAGAATGAAAGCTACAGGAAAA CAGGTCCATTCTTGATCGTGATGGAGCTTGAGCCGTGGGGATCGCTCTCC GGCCTGGTTCTGTGGGGATCCGAAGCCGCGCAGTGCATGCGAGACGTTGC CATCGCGCTGCAGTACATTCACCGCAAGGGGTACATTCATGGAGATATTA AGCCCGCTAATCTCCTGAGGGATGGCTGTGGCAGAATCAAAGTCTGCGAT TTTGGATGCTGCAAGAAGATTGCGACTGATGACGACACTGTATTTCGCCG TCCACAGGGGACCCCCGCCTTCATGTCCCCCGAGGCCTACCGAGGGCACG GTGGCACAACAGCCTGCGACGTGTGGTCACTCGCGGCTACAATCTTCTGC GTAGTTCGAGGTCATCCTCCTTTCATGGGGCAGAACTTGGTAGAGAAGAT CATGTATGGCGCGCCCGATTCCCATAGGTCAGCCCCTGTTGTCTGCTGTG AAGAAGAGTCCAACCTGGCGCACCTGGTGAACTGGGGGTTGTCCAAACCT GCCAGGGACAGGCCTTCAGTGGATGATGTTCTGCACCATCCATGGATGGC AAATGCGGAGGATTTGCGGGCTCGGGACGCAGCATGTCACCTGTTTTCTC CGTCCTCATCTGAAGCCGGGTCGAATGTGTCTGCTCACTCAAACTCAATT GAGTCCAGCACCCACATCGGGGTTGTGCCTTCTATGTCCCCTTCAATTTT CCTTGCGAAGTATACAGTGGTGTAG
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Coding sequence (CDS) from alignment at Contig_228:145457..146431+

>mRNA_11539 ID=mRNA_11539|Name=jgi.p|Trimin1|180799|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=975bp|location=Sequence derived from alignment at Contig_228:145457..146431+ (Tribonema minus UTEX_B_3156 )
ATGAACGCAGCCGCAACAGTCCAACAACCCTCGTATACTGTGCGAGGATT
TGGAATCATCAAGAGATTAGGATCTGGAGCGACAGCAACTGTGTATGAGG
CTTGCACTGAGAAAAATGAGGTAGTGGCACTGAAGGTGGTGATGCGCGAT
AGAAACACGTACATGCGAGAACTGAGAGTACTGAAGGAGATGCGACACGA
CAGGATTGTCAAGCTTTTCCGTTCTGAAGAGAATGAAAGCTACAGGAAAA
CAGGTCCATTCTTGATCGTGATGGAGCTTGAGCCGTGGGGATCGCTCTCC
GGCCTGGTTCTGTGGGGATCCGAAGCCGCGCAGTGCATGCGAGACGTTGC
CATCGCGCTGCAGTACATTCACCGCAAGGGGTACATTCATGGAGATATTA
AGCCCGCTAATCTCCTGAGGGATGGCTGTGGCAGAATCAAAGTCTGCGAT
TTTGGATGCTGCAAGAAGATTGCGACTGATGACGACACTGTATTTCGCCG
TCCACAGGGGACCCCCGCCTTCATGTCCCCCGAGGCCTACCGAGGGCACG
GTGGCACAACAGCCTGCGACGTGTGGTCACTCGCGGCTACAATCTTCTGC
GTAGTTCGAGGTCATCCTCCTTTCATGGGGCAGAACTTGGTAGAGAAGAT
CATGTATGGCGCGCCCGATTCCCATAGGTCAGCCCCTGTTGTCTGCTGTG
AAGAAGAGTCCAACCTGGCGCACCTGGTGAACTGGGGGTTGTCCAAACCT
GCCAGGGACAGGCCTTCAGTGGATGATGTTCTGCACCATCCATGGATGGC
AAATGCGGAGGATTTGCGGGCTCGGGACGCAGCATGTCACCTGTTTTCTC
CGTCCTCATCTGAAGCCGGGTCGAATGTGTCTGCTCACTCAAACTCAATT
GAGTCCAGCACCCACATCGGGGTTGTGCCTTCTATGTCCCCTTCAATTTT
CCTTGCGAAGTATACAGTGGTGTAG
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