mRNA_11536 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180791
Unique NamemRNA_11536
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180791 vs. uniprot
Match: A0A835Z117_9STRA (Proliferating cell nuclear antigen n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z117_9STRA)

HSP 1 Score: 592 bits (1527), Expect = 1.810e-213
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1 
Query:    1 MQKKKSKRPTKRKRSAKGAQSPPPVAAAEEPNADALALPSEPEVPEGTVVCMRTHHTQQWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQVCSEFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSRPLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIAQCAREEGGGDE 930
            MQKKKSKRPTKRKRSAKGAQSPPPVAAAEEPNADALALPSEPEVPEGTVVCMRTHHTQQWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQVCSEFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSRPLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIAQCAREEGGGDE
Sbjct:    1 MQKKKSKRPTKRKRSAKGAQSPPPVAAAEEPNADALALPSEPEVPEGTVVCMRTHHTQQWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQVCSEFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSRPLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIAQCAREEGGGDE 310
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BLAST of jgi.p|Trimin1|180791 vs. uniprot
Match: A0A835YX88_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX88_9STRA)

HSP 1 Score: 420 bits (1079), Expect = 6.580e-145
Identity = 210/284 (73.94%), Postives = 245/284 (86.27%), Query Frame = 1 
Query:   76 AAAEEPNADALALPSEPEVPEGTVVCMRTHHTQQWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQVCSEFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSRPLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIAQCAREEGGGD 927
            A A E  A A+A P++  VPEG +VCMRTHHTQQWRTL DALKDLI ESPVTFG +GMKL+SMDPAHVAL+NLQ+ SE YYCKRE TVGLNVAALY+MLRNLTTGGY+LE++L E DPDHL +L++NE+KRTRTSNR KLLRLP+EIITIPP VFQRVLSIPSADFQRYIRELSGVSNKI IRST+D+L+LSA GT G+TEIE+RPTASGMHWQ I+S A+DE    VEGV+ ++Y+ERF+RPLD VVEIF++ AYPLVLRY +  A VRLVIAQC  ++ GG+
Sbjct:   44 APAGEDAAAAVACPTDEAVPEGILVCMRTHHTQQWRTLTDALKDLISESPVTFGPAGMKLVSMDPAHVALVNLQIQSEHYYCKREITVGLNVAALYKMLRNLTTGGYILELSLSEDDPDHLRVLISNEDKRTRTSNRPKLLRLPDEIITIPPAVFQRVLSIPSADFQRYIRELSGVSNKIKIRSTRDVLVLSAEGTSGSTEIEIRPTASGMHWQFIDSEATDE---VVEGVFYSRYVERFARPLDSVVEIFIKQAYPLVLRYQLQAATVRLVIAQCTDDDAGGE 324
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BLAST of jgi.p|Trimin1|180791 vs. uniprot
Match: A0A836CPH7_9STRA (PCNA_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPH7_9STRA)

HSP 1 Score: 331 bits (848), Expect = 1.310e-108
Identity = 175/287 (60.98%), Postives = 211/287 (73.52%), Query Frame = 1 
Query:  127 EVPEGTVVCMRTHHTQQWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQVCSEFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIE-------------------------SAASDEEEEAVEGVYLAKYLERFSRPLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIAQCARE 912
            +VP GT+V +RT H+QQWRTL DALKDL+PE PVTFGA G+KL+SMDP  +ALI   +            VGLNVAALYRMLRNLTTGGY+LE+++ ES PD +S++V+N EKR RT + LKLLRLPEEIITIPP VFQRVLSIPSADFQRY+RELSGVSN+I +RS++D L LSA+G  G TEIE+RPTASGMHWQ IE                         S  +  E+  ++GV+L+KYLERFSRPLD +VEIF++  YPLVLRY+M T VVRLV+AQC  E
Sbjct:  120 DVPLGTLVLLRTSHSQQWRTLADALKDLVPECPVTFGADGLKLVSMDPGMIALICWLM------------VGLNVAALYRMLRNLTTGGYILELSIHESTPDRMSVVVSNGEKRVRTCHSLKLLRLPEEIITIPPAVFQRVLSIPSADFQRYVRELSGVSNRIRVRSSRDRLTLSATGVAGLTEIEIRPTASGMHWQFIEPXXXXXXXXXADDAPEXXXXXXXGASPPAAVEDPGIDGVFLSKYLERFSRPLDSIVEIFLKRDYPLVLRYTMQTTVVRLVVAQCEDE 394
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BLAST of jgi.p|Trimin1|180791 vs. uniprot
Match: A0A836CHQ2_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ2_9STRA)

HSP 1 Score: 319 bits (817), Expect = 1.250e-105
Identity = 160/260 (61.54%), Postives = 201/260 (77.31%), Query Frame = 1 
Query:  145 VVCMRTHHTQQWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQVCSEFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEE--EEAVEGVYLAKYLERFSRPLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIAQCAREEG 918
            ++CMR+  T QWR L+D LKDLI E P++F   GMKLIS+DP  VAL++LQ  SEFYYCK E TVG+N+ ALY+MLRNLTTGGY+LE ++   + D LSI + N +KRT TSN+LKLL+LP+E + IP T FQRVLSIPSAD QR++REL+ +SNKI I+ST D L+LSA GTMG++EI +RPTASGMHW  I++    E   +  VEGVY +K+LERFSRPLDP+ EIF++  YPLVLRY +STA VRLVIA    +EG
Sbjct:   36 ILCMRSSQTSQWRLLVDFLKDLITECPISFSQDGMKLISLDPIKVALLHLQAKSEFYYCKSEITVGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEG 295
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BLAST of jgi.p|Trimin1|180791 vs. uniprot
Match: A0A835Z7L8_9STRA (Proliferating cell nuclear antigen n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L8_9STRA)

HSP 1 Score: 308 bits (788), Expect = 3.330e-101
Identity = 155/250 (62.00%), Postives = 194/250 (77.60%), Query Frame = 1 
Query:  175 QWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQVCSEFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEE--EEAVEGVYLAKYLERFSRPLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIAQCAREEG 918
            QWR L+D LKDLI E P++F   GMKLIS+DP  VAL++LQ  SEFYYCK E T+G+N+ ALY+MLRNLTTGGY+LE ++   + D LSI + N +KRT TSN+LKLL+LP+E + IP T FQRVLSIPSAD QR++REL+ +SNKI I+ST D L+LSA GTMG++EI +RPTASGMHW  I++    E   +  VEGVY +K+LERFSRPLDP+ EIF++  YPLVLRY +STA VRLVIA    +EG
Sbjct:   48 QWRLLVDFLKDLITECPISFNQDGMKLISLDPIKVALLHLQAKSEFYYCKSEITIGMNITALYKMLRNLTTGGYMLEFSMSSKEMDVLSIQLINSDKRTCTSNKLKLLKLPQETLIIPSTNFQRVLSIPSADLQRHVRELAALSNKIKIKSTADQLILSAEGTMGSSEIVIRPTASGMHWISIDNNQESEGGGDAVVEGVYFSKFLERFSRPLDPICEIFVKQNYPLVLRYVLSTATVRLVIAPVQEDEG 297
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BLAST of jgi.p|Trimin1|180791 vs. uniprot
Match: A0A835Z2Q5_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q5_9STRA)

HSP 1 Score: 260 bits (664), Expect = 1.050e-82
Identity = 122/257 (47.47%), Postives = 185/257 (71.98%), Query Frame = 1 
Query:  127 EVPEGTVVCMRTHHTQQWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQVCSEFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSRPLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIA 897
            ++P   ++ MR+  T QWR++ D +KD+  E P  F   G+ +I++DP  +ALI+++  +EFYYCK    VG+NV  LYR+LRNLT+ GY+LEI++ +++ D + + + N +KR+   N++KLLRLP+E+ITIP T F RVLSIPS+D QRYIRELS +S+KI++ ST+D L LSA G +G++EI VRPT+SG+H+   ++   DE    V   + ++YLE+  RP+D   E+F++  YPLVLRY+++TA +R+VIA
Sbjct:   20 DLPADCILMMRSTQTSQWRSIFDFVKDVTTEVPFKFDTEGLSIITLDPLKIALISVRAVTEFYYCKAPLNVGINVTVLYRLLRNLTSAGYVLEISMFQNETDVIHVQITNRDKRSVVRNKIKLLRLPDEVITIPSTTFDRVLSIPSSDLQRYIRELSSLSSKITVSSTRDELTLSAQGALGSSEITVRPTSSGVHFLFKDTEKHDE---VVSARFYSRYLEKLCRPIDSSTEVFLKKGYPLVLRYNLATATIRVVIA 273
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BLAST of jgi.p|Trimin1|180791 vs. uniprot
Match: B5LWG9_9PHYC (Putative PCNA n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG9_9PHYC)

HSP 1 Score: 177 bits (450), Expect = 1.850e-50
Identity = 95/254 (37.40%), Postives = 164/254 (64.57%), Query Frame = 1 
Query:  145 VVCMRTHHTQQWRTLIDALKDLIPESPVTFGAS-GMKLISMDPAHVALINLQVCS-EFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSRP-LDPVVEIFMRPAYPLVLRYSMSTAVVRLVIA 897
            +  MRT    Q+++L + LK+L+ +  + F  + G++L+S+DP  VA+++L V S E++Y K   T G+N+A LYRM+R+L++G Y+ E  + E +P  ++I + N ++RTRT + +KLL L E  I+IP   + RV+S+PS++  +++RE+  VSN +++R T+  L   A G M ++ I + PTASG++W+  E          +EG ++ +YLE+F R  ++  VE+F++  +PL+LRY +S   +R VIA
Sbjct:   36 IFLMRTSQCAQFKSLCECLKELLTDVNMEFIENKGIRLVSIDPGRVAMVHLVVNSVEYFYVKGTVTAGMNMAFLYRMIRSLSSGDYM-EWRIYEDNPHAMNIELYNSDRRTRTVSSMKLLDLDEVEISIPNVEYDRVVSMPSSELSKHVREMVAVSNFVTVRGTRSTLEFIAEGEMASSHITIHPTASGLNWKFSEDVGD------IEGKFVVRYLEKFGRVGVEANVELFLKTDFPLILRYELSIGTLRFVIA 282
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BLAST of jgi.p|Trimin1|180791 vs. uniprot
Match: Q6XM81_9PHYC (FirrV-1-A6 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM81_9PHYC)

HSP 1 Score: 177 bits (448), Expect = 2.210e-50
Identity = 94/254 (37.01%), Postives = 164/254 (64.57%), Query Frame = 1 
Query:  145 VVCMRTHHTQQWRTLIDALKDLIPESPVTF-GASGMKLISMDPAHVALINLQVCS-EFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSRP-LDPVVEIFMRPAYPLVLRYSMSTAVVRLVIA 897
            +  +RT  + Q++ L + LK+L+ +  + F    G++L+S+DP  VA+++L + S E++Y +   T GLN++ LYRM+R LT+G  + E  + E DP  + I + N ++RTRT + +KLL L E  I+IP   + R++S+PS++  +++RE+  VSN +++R+TK  L   A G M T+ I + PTASG++W++     SD+    +EG ++ +YLE+F R  ++  VE+F++  +PL+LRY ++   +R VIA
Sbjct:   16 IALLRTSQSTQFKNLCECLKELLTDVNLEFIQDKGIRLVSIDPGRVAMVHLVINSVEYFYAQGTVTAGLNMSFLYRMIRCLTSGDSM-EWRVFEDDPHTMHIELYNNDRRTRTVSSIKLLDLDEVDISIPEVEYDRIVSMPSSELSKHVREMIAVSNYVTVRTTKTTLQFIAEGDMATSHITIHPTASGLNWKY-----SDDVVGTIEGKFVVRYLEKFGRVGVEANVELFLKKNFPLILRYELTIGTLRFVIA 263
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BLAST of jgi.p|Trimin1|180791 vs. uniprot
Match: D8LPF8_ECTSI (Proliferating cell nuclear antigen n=2 Tax=root TaxID=1 RepID=D8LPF8_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 4.500e-50
Identity = 100/254 (39.37%), Postives = 161/254 (63.39%), Query Frame = 1 
Query:  145 VVCMRTHHTQQWRTLIDALKDLIPESPVTF-GASGMKLISMDPAHVALINLQVCS-EFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSR-PLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIA 897
            V+ M+T    Q+++LI+ LK+L+ E  + F    G++L+S+DP  VA+I+L V + E +Y K   T GLNV  LY+M+R++T+  ++ E  + E +P  + I ++N E+RT+T   +KLL L  E I IP   F RV+S+PS++  +++RE+  VS  ISIR+T+  L L + G M  + I + PTASG++W+H E        E +EG Y A+Y+E+F++  L   VE+F++  YPL+LR+ +S   +R  IA
Sbjct:   28 VLMMQTSQCLQFKSLIECLKELLCEVNMDFIEGKGIRLVSIDPGRVAMIHLVVNNIESFYAKGTVTAGLNVVVLYKMIRSMTSNDFM-EWRIYEDEPHRMEIELSNSERRTKTVTSIKLLDLDAEDIIIPQVEFDRVVSMPSSELSKHVREMVTVSPFISIRATQTTLELVSEGEMAKSHITIEPTASGLNWKHSEKG------EDIEGKYFARYIEKFTKNSLAINVELFLKANYPLILRFEISIGCLRFCIA 274
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BLAST of jgi.p|Trimin1|180791 vs. uniprot
Match: A0A6C0F6B6_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F6B6_9ZZZZ)

HSP 1 Score: 144 bits (362), Expect = 1.200e-37
Identity = 76/247 (30.77%), Postives = 154/247 (62.35%), Query Frame = 1 
Query:  145 VVCMRTHHTQQWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQVCS---EFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILVNNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSGVSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEEEAVEGVYLAKYLERFSR--PLDPVVEIFMRPAYPLVLRYSMS 870
            ++ ++T  +  +R L++ALK+++ ++ + F  +G+K+++ D +   LI++++ +   E YYC  +T +GLN+  LY++++ +     +L + + +  P+ +SI +NN EK+++T  RL LL LP   I+IPP  F+  L++PS+DFQ+ IR+++ + +KI I+S+ + L+LS  G     E  +  T +G+ +     +   + EE ++GV+  KYL  F++   L  ++ ++++  YPLV+RY ++
Sbjct:    7 LLVVKTVQSGAFRVLVEALKEILTDTNLIFEPTGIKMMATDNSDTVLIHMKLEADKFEHYYCPEKTVIGLNMNNLYKLIKTMGNND-ILTMAIPKMSPNRISIKINNMEKQSQTIFRLNLLDLPHPEISIPPAKFETELTLPSSDFQKLIRDMTNIGDKIEIKSSGENLILSCEGDFAEQETVLSETQNGLSF-----SVKSKPEEPIQGVFSLKYLSLFTKCTNLCNLIHLYIKNDYPLVIRYDVA 247
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180791 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z117_9STRA1.810e-213100.00Proliferating cell nuclear antigen n=3 Tax=Tribone... [more]
A0A835YX88_9STRA6.580e-14573.94Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A836CPH7_9STRA1.310e-10860.98PCNA_C domain-containing protein n=1 Tax=Tribonema... [more]
A0A836CHQ2_9STRA1.250e-10561.54Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A835Z7L8_9STRA3.330e-10162.00Proliferating cell nuclear antigen n=2 Tax=Tribone... [more]
A0A835Z2Q5_9STRA1.050e-8247.47Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
B5LWG9_9PHYC1.850e-5037.40Putative PCNA n=1 Tax=Feldmannia species virus Tax... [more]
Q6XM81_9PHYC2.210e-5037.01FirrV-1-A6 n=1 Tax=Feldmannia irregularis virus a ... [more]
D8LPF8_ECTSI4.500e-5039.37Proliferating cell nuclear antigen n=2 Tax=root Ta... [more]
A0A6C0F6B6_9ZZZZ1.200e-3730.77Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_228contigContig_228:140673..141605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180791|e_gw1.228.48.1
BRITEko00000,ko00001,ko00002,ko03032,ko03400
KEGG ModuleM00295
KEGG Pathwayko03030,ko03410,ko03420,ko03430,ko04110,ko04530,ko05161,ko05166,map03030,map03410,map03420,map03430,map04110,map04530,map05161,map05166
KEGG koko:K04802
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000077,GO:0000082,GO:0000083,GO:0000228,GO:0000278,GO:0000280,GO:0000700,GO:0000701,GO:0000710,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006273,GO:0006275,GO:0006281,GO:0006282,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010948,GO:0015630,GO:0016043,GO:0016070,GO:0016458,GO:0016567,GO:0016604,GO:0016787,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0023052,GO:0030154,GO:0030234,GO:0030330,GO:0030337,GO:0030466,GO:0030855,GO:0030894,GO:0030971,GO:0030983,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032135,GO:0032139,GO:0032200,GO:0032201,GO:0032268,GO:0032270,GO:0032404,GO:0032405,GO:0032446,GO:0032502,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0034085,GO:0034087,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035035,GO:0035556,GO:0035753,GO:0035861,GO:0036211,GO:0040029,GO:0042176,GO:0042276,GO:0042592,GO:0042769,GO:0042770,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0043626,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044786,GO:0044796,GO:0044819,GO:0044843,GO:0044877,GO:0045005,GO:0045732,GO:0045739,GO:0045740,GO:0045786,GO:0045787,GO:0045814,GO:0045892,GO:0045930,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0060429,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070182,GO:0070557,GO:0070647,GO:0070914,GO:0070987,GO:0071156,GO:0071158,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090304,GO:0090305,GO:0090329,GO:0090734,GO:0097159,GO:0098772,GO:0098813,GO:0104004,GO:0140014,GO:0140097,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902296,GO:1902319,GO:1902392,GO:1902394,GO:1902400,GO:1902402,GO:1902403,GO:1902679,GO:1902806,GO:1902807,GO:1902969,GO:1902983,GO:1902990,GO:1903021,GO:1903022,GO:1903046,GO:1903047,GO:1903362,GO:1903364,GO:1903459,GO:1903460,GO:1903506,GO:1903507,GO:1905777,GO:1905779,GO:1990782,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000278,GO:2000573,GO:2001020,GO:2001022,GO:2001141
Preferred namePCNA
DescriptionDNA polymerase processivity factor activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0592@1|root,KOG1636@2759|Eukaryota
Evalue7.38e-51
Seed ortholog2880.D8LPF8
Hectar predicted targeting categoryother localisation
TranscriptId181113
TrackFilteredModels1
ProteinId180791
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180791gene_11536Tribonema minus UTEX_B_3156 geneContig_228 140673..141605 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11536_1exon_11536_1Tribonema minus UTEX_B_3156 exonContig_228 140673..141605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11536CDS_11536Tribonema minus UTEX_B_3156 CDSContig_228 140673..141605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180791Trimin1|180791|e_gw1.228.48.1Tribonema minus UTEX_B_3156 polypeptideContig_228 140673..141605 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11536 ID=mRNA_11536|Name=jgi.p|Trimin1|180791|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=933bp|location=Sequence derived from alignment at Contig_228:140673..141605+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAGAAGAAATCGAAGCGCCCCACCAAGCGCAAGCGGTCTGCTAA
GGGTGCGCAGTCGCCACCTCCTGTAGCCGCTGCTGAGGAACCGAACGCCG
ATGCTCTCGCTCTCCCTTCTGAACCCGAGGTCCCGGAGGGCACCGTTGTC
TGCATGAGAACGCACCACACGCAGCAATGGCGGACTCTGATTGACGCGCT
GAAGGACCTCATTCCTGAGAGCCCCGTCACCTTCGGCGCTTCGGGCATGA
AGCTCATCTCAATGGACCCTGCTCACGTCGCGCTCATCAACCTTCAGGTG
TGTAGTGAGTTCTACTACTGCAAACGCGAGACAACTGTGGGATTGAACGT
GGCTGCGCTGTACAGAATGCTCCGGAACTTGACGACGGGCGGCTATCTGC
TGGAAATCAACCTCCTTGAGAGTGATCCCGACCACCTCAGCATACTCGTG
AACAATGAGGAGAAGCGCACCCGCACCAGCAACCGCCTCAAGCTTCTGCG
GTTGCCCGAGGAGATCATCACCATCCCTCCCACAGTGTTCCAGCGCGTCC
TCTCAATTCCCTCTGCGGACTTCCAGCGGTACATCAGGGAGCTGAGCGGG
GTCAGCAACAAGATATCGATTCGCTCGACGAAGGACATGCTACTCCTCAG
CGCCTCGGGCACGATGGGGACGACAGAGATTGAGGTGCGCCCTACAGCGA
GCGGAATGCACTGGCAGCACATTGAGTCGGCGGCGTCAGACGAGGAGGAG
GAGGCAGTGGAGGGGGTCTATCTTGCCAAGTACCTGGAGAGGTTCTCACG
CCCTCTTGACCCTGTTGTGGAGATCTTCATGCGCCCCGCATACCCTCTCG
TCCTCAGATACAGCATGAGCACCGCAGTGGTGCGGCTCGTCATAGCGCAG
TGCGCACGGGAAGAGGGCGGCGGCGATGAATGA
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protein sequence of jgi.p|Trimin1|180791

>Trimin1|180791|e_gw1.228.48.1 ID=Trimin1|180791|e_gw1.228.48.1|Name=jgi.p|Trimin1|180791|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=311bp
MQKKKSKRPTKRKRSAKGAQSPPPVAAAEEPNADALALPSEPEVPEGTVV
CMRTHHTQQWRTLIDALKDLIPESPVTFGASGMKLISMDPAHVALINLQV
CSEFYYCKRETTVGLNVAALYRMLRNLTTGGYLLEINLLESDPDHLSILV
NNEEKRTRTSNRLKLLRLPEEIITIPPTVFQRVLSIPSADFQRYIRELSG
VSNKISIRSTKDMLLLSASGTMGTTEIEVRPTASGMHWQHIESAASDEEE
EAVEGVYLAKYLERFSRPLDPVVEIFMRPAYPLVLRYSMSTAVVRLVIAQ
CAREEGGGDE*
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mRNA from alignment at Contig_228:140673..141605+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11536 ID=mRNA_11536|Name=jgi.p|Trimin1|180791|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=933bp|location=Sequence derived from alignment at Contig_228:140673..141605+ (Tribonema minus UTEX_B_3156 )
ATGCAGAAGAAGAAATCGAAGCGCCCCACCAAGCGCAAGCGGTCTGCTAA
GGGTGCGCAGTCGCCACCTCCTGTAGCCGCTGCTGAGGAACCGAACGCCG
ATGCTCTCGCTCTCCCTTCTGAACCCGAGGTCCCGGAGGGCACCGTTGTC
TGCATGAGAACGCACCACACGCAGCAATGGCGGACTCTGATTGACGCGCT
GAAGGACCTCATTCCTGAGAGCCCCGTCACCTTCGGCGCTTCGGGCATGA
AGCTCATCTCAATGGACCCTGCTCACGTCGCGCTCATCAACCTTCAGGTG
TGTAGTGAGTTCTACTACTGCAAACGCGAGACAACTGTGGGATTGAACGT
GGCTGCGCTGTACAGAATGCTCCGGAACTTGACGACGGGCGGCTATCTGC
TGGAAATCAACCTCCTTGAGAGTGATCCCGACCACCTCAGCATACTCGTG
AACAATGAGGAGAAGCGCACCCGCACCAGCAACCGCCTCAAGCTTCTGCG
GTTGCCCGAGGAGATCATCACCATCCCTCCCACAGTGTTCCAGCGCGTCC
TCTCAATTCCCTCTGCGGACTTCCAGCGGTACATCAGGGAGCTGAGCGGG
GTCAGCAACAAGATATCGATTCGCTCGACGAAGGACATGCTACTCCTCAG
CGCCTCGGGCACGATGGGGACGACAGAGATTGAGGTGCGCCCTACAGCGA
GCGGAATGCACTGGCAGCACATTGAGTCGGCGGCGTCAGACGAGGAGGAG
GAGGCAGTGGAGGGGGTCTATCTTGCCAAGTACCTGGAGAGGTTCTCACG
CCCTCTTGACCCTGTTGTGGAGATCTTCATGCGCCCCGCATACCCTCTCG
TCCTCAGATACAGCATGAGCACCGCAGTGGTGCGGCTCGTCATAGCGCAG
TGCGCACGGGAAGAGGGCGGCGGCGATGAATGA
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Coding sequence (CDS) from alignment at Contig_228:140673..141605+

>mRNA_11536 ID=mRNA_11536|Name=jgi.p|Trimin1|180791|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=933bp|location=Sequence derived from alignment at Contig_228:140673..141605+ (Tribonema minus UTEX_B_3156 )
ATGCAGAAGAAGAAATCGAAGCGCCCCACCAAGCGCAAGCGGTCTGCTAA
GGGTGCGCAGTCGCCACCTCCTGTAGCCGCTGCTGAGGAACCGAACGCCG
ATGCTCTCGCTCTCCCTTCTGAACCCGAGGTCCCGGAGGGCACCGTTGTC
TGCATGAGAACGCACCACACGCAGCAATGGCGGACTCTGATTGACGCGCT
GAAGGACCTCATTCCTGAGAGCCCCGTCACCTTCGGCGCTTCGGGCATGA
AGCTCATCTCAATGGACCCTGCTCACGTCGCGCTCATCAACCTTCAGGTG
TGTAGTGAGTTCTACTACTGCAAACGCGAGACAACTGTGGGATTGAACGT
GGCTGCGCTGTACAGAATGCTCCGGAACTTGACGACGGGCGGCTATCTGC
TGGAAATCAACCTCCTTGAGAGTGATCCCGACCACCTCAGCATACTCGTG
AACAATGAGGAGAAGCGCACCCGCACCAGCAACCGCCTCAAGCTTCTGCG
GTTGCCCGAGGAGATCATCACCATCCCTCCCACAGTGTTCCAGCGCGTCC
TCTCAATTCCCTCTGCGGACTTCCAGCGGTACATCAGGGAGCTGAGCGGG
GTCAGCAACAAGATATCGATTCGCTCGACGAAGGACATGCTACTCCTCAG
CGCCTCGGGCACGATGGGGACGACAGAGATTGAGGTGCGCCCTACAGCGA
GCGGAATGCACTGGCAGCACATTGAGTCGGCGGCGTCAGACGAGGAGGAG
GAGGCAGTGGAGGGGGTCTATCTTGCCAAGTACCTGGAGAGGTTCTCACG
CCCTCTTGACCCTGTTGTGGAGATCTTCATGCGCCCCGCATACCCTCTCG
TCCTCAGATACAGCATGAGCACCGCAGTGGTGCGGCTCGTCATAGCGCAG
TGCGCACGGGAAGAGGGCGGCGGCGATGAATGA
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