mRNA_11479 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155428
Unique NamemRNA_11479
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A835Z7X4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X4_9STRA)

HSP 1 Score: 265 bits (678), Expect = 1.770e-90
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1
Query:    1 ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348
            ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP
Sbjct:    1 ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 116          
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A836CGJ8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ8_9STRA)

HSP 1 Score: 222 bits (566), Expect = 2.250e-73
Identity = 96/117 (82.05%), Postives = 104/117 (88.89%), Query Frame = 1
Query:    1 ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQ-GCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348
            E QGALCYPSC+ GW GRLTRCV  CP GFKDD VSGCIKPASYGRGAGYALWRE ACKKDNP+ GC+K GALWYPKCKAGYHNVGCCTCSPDCP  +KDYG+GC+PP+K+RG GVP
Sbjct:    1 EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGVP 117          
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A0V0QX94_PSEPJ (Uncharacterized protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QX94_PSEPJ)

HSP 1 Score: 139 bits (351), Expect = 2.610e-38
Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 ERQGALCYPSCDPGWQG-RLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVK-SRGVG 342
            E+ G + YP C  G+       C   CP GF+DDG+  C KPA+YGRGAGYALW +  C   + QGCEKNGALWYPKC+ G+HNVGCC CSP+CP+ + D GV C  P    RGVG
Sbjct:  113 EKWGLIIYPKCKQGYTNWECCVCANECPSGFRDDGLY-CAKPAAYGRGAGYALWDKQKCFDRHSQGCEKNGALWYPKCREGFHNVGCCICSPNCPSGWTDIGVSCKKPSSYGRGVG 227          
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: T0PRZ5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PRZ5_SAPDV)

HSP 1 Score: 141 bits (355), Expect = 4.910e-38
Identity = 70/120 (58.33%), Postives = 80/120 (66.67%), Query Frame = 1
Query:    1 ERQGALCYPSCDPGWQGRLTRCVM---ACP--PGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGV 345
            E  GALCYP C  G++  +  C+     C    G  D GVS C KP +YGRGAGYALW E  CK+++ QGCEKNGALWYPKCKAG+HNVGCC CSPDCP S+ D G  C      RGVGV
Sbjct:  191 EAYGALCYPKCKDGYEA-VGCCICRKKGCGGVDGANDIGVS-CTKPKAYGRGAGYALWDEDKCKRESSQGCEKNGALWYPKCKAGFHNVGCCICSPDCPESFLDDGAYCRKDSYGRGVGV 308          
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: I7MES1_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MES1_TETTS)

HSP 1 Score: 135 bits (340), Expect = 7.940e-37
Identity = 66/127 (51.97%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    1 ERQGALCYPSCDPGWQG-RLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREG----------ACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348
            E+ GA+ YP CD G+       C   CPPGF+DDG   C KP++YGRGAGY  W+ G           C+KDN QGCE+NG + YPKC+ G+HN GCC CSPDCP+   D GV C+ PV  RGVG P
Sbjct:   96 EQYGAIMYPKCDNGFFNVGCCLCASQCPPGFRDDGFF-CAKPSAYGRGAGYP-WQFGDAFNLDNATKRCEKDNSQGCEQNGLIIYPKCQQGFHNFGCCICSPDCPSGTVDIGVSCTKPVYGRGVGFP 220          
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: I7LT73_TETTS (Uncharacterized protein n=4 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7LT73_TETTS)

HSP 1 Score: 135 bits (340), Expect = 9.120e-37
Identity = 65/127 (51.18%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 ERQGALCYPSCDPGWQG-RLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREG----------ACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348
            E+ GA+ YP C+ G+       C  +CPPGF+DDG+  C KP +YGRGAGY  W+ G           C+ +N QGCE+NG + YPKCK G+HNVGCC CSPDCP+   D GV C+ PV  RGVG P
Sbjct:   99 EQYGAIMYPKCEEGFYNVGCCLCESSCPPGFRDDGLF-CAKPEAYGRGAGYP-WKFGDSLNLNDASKRCQSENSQGCEQNGLVIYPKCKQGFHNVGCCICSPDCPSGTTDIGVSCTKPVYGRGVGFP 223          
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A067BJF9_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BJF9_SAPPC)

HSP 1 Score: 138 bits (348), Expect = 9.140e-37
Identity = 66/120 (55.00%), Postives = 80/120 (66.67%), Query Frame = 1
Query:    1 ERQGALCYPSCDPGWQGRLTRCVM---ACP--PGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGV 345
            E  GALCYP C  G++  +  C+     C    G  D GVS C KP++YGRG+GYA+W EG CK++N QGCEKNGA+WYPKC+ G+HNVGCC CSPDCP  + D G  C      RGVGV
Sbjct:  225 EAWGALCYPKCKEGYES-VGCCICRKKGCGGVKGATDIGVS-CAKPSAYGRGSGYAIWNEGKCKRENGQGCEKNGAMWYPKCEKGFHNVGCCICSPDCPEGFHDDGAFCRKDHYGRGVGV 342          
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A835XJH2_9CHLO (WSC domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XJH2_9CHLO)

HSP 1 Score: 136 bits (342), Expect = 5.260e-36
Identity = 62/116 (53.45%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    1 ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348
            E+ G LCYP C  G+ G    C   CP  F+DDG   C KPA+YGRG GYALW +  C +DNPQGCE NG L+YPKC AG++  GCC CSP CP+   D GV C+     R  GVP
Sbjct:  190 EQSGLLCYPPCQAGYTGVGPVCWQNCPSNFRDDGAF-CAKPAAYGRGTGYALWDQWKCVRDNPQGCELNGWLYYPKCAAGFYAFGCCICSPLCPSGMTDIGVSCAKQSYGRTAGVP 304          
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A1V9YIT2_9STRA (Uncharacterized protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIT2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 6.050e-36
Identity = 66/120 (55.00%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 ERQGALCYPSCDPGWQGRLTRCVM---ACP--PGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGV 345
            E  GALCYP C  G++  +  C+     C    G  D GVS C KPA+YGRG+GYA+W E  C K+N QGCEKNGA+WYPKC  G+HNVGCC CSPDCP+   D G  C      RGVGV
Sbjct:  217 ESYGALCYPKCKEGYEA-IGCCICRKKGCSGVDGVTDIGVS-CTKPAAYGRGSGYAIWNEDKCNKENAQGCEKNGAMWYPKCGKGFHNVGCCICSPDCPSGTTDDGAYCRKDSYGRGVGV 334          
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: I7MEW1_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MEW1_TETTS)

HSP 1 Score: 133 bits (334), Expect = 6.110e-36
Identity = 65/127 (51.18%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    1 ERQGALCYPSCDPGWQG-RLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREG----------ACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348
            E+ GA+ YP C+ G+       C   CPPGF+DDG+  C KP SYGRGAGY  W  G           C++DNPQGCE+NG + YPKC  G+H+VGCC CSP CP+   D GV C+ PV  RGVG P
Sbjct:   99 EQYGAIMYPKCNDGFFNVGCCLCESQCPPGFRDDGLF-CAKPDSYGRGAGYP-WEFGDDLNLNDAYNRCQRDNPQGCEQNGLIIYPKCAQGFHSVGCCVCSPSCPSGTTDIGVSCTKPVYGRGVGFP 223          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7X4_9STRA1.770e-90100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CGJ8_9STRA2.250e-7382.05Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A0V0QX94_PSEPJ2.610e-3855.17Uncharacterized protein n=1 Tax=Pseudocohnilembus ... [more]
T0PRZ5_SAPDV4.910e-3858.33Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
I7MES1_TETTS7.940e-3751.97Uncharacterized protein n=1 Tax=Tetrahymena thermo... [more]
I7LT73_TETTS9.120e-3751.18Uncharacterized protein n=4 Tax=Tetrahymena thermo... [more]
A0A067BJF9_SAPPC9.140e-3755.00Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A835XJH2_9CHLO5.260e-3653.45WSC domain-containing protein n=1 Tax=Edaphochlamy... [more]
A0A1V9YIT2_9STRA6.050e-3655.00Uncharacterized protein n=2 Tax=Achlya hypogyna Ta... [more]
I7MEW1_TETTS6.110e-3651.18Uncharacterized protein n=1 Tax=Tetrahymena thermo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_228contigContig_228:6135..6482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155428|gw1.228.55.1
Max annot lvl5878|Ciliophora
EggNOG OGs2DTY2@1|root,2S6IW@2759|Eukaryota,3ZDJ9@5878|Ciliophora
Evalue1.5e-37
Seed ortholog5911.EAR84616
Hectar predicted targeting categoryother localisation
TranscriptId155750
TrackFilteredModels1
ProteinId155428
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155428gene_11479Tribonema minus UTEX_B_3156 geneContig_228 6135..6482 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11479_1exon_11479_1Tribonema minus UTEX_B_3156 exonContig_228 6135..6482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11479CDS_11479Tribonema minus UTEX_B_3156 CDSContig_228 6135..6482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155428Trimin1|155428|gw1.228.55.1Tribonema minus UTEX_B_3156 polypeptideContig_228 6135..6482 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11479 ID=mRNA_11479|Name=jgi.p|Trimin1|155428|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_228:6135..6482+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGCGTCAAGGTGCCCTTTGCTACCCGAGTTGTGATCCTGGATGGCAAGG
TCGCTTGACAAGGTGTGTGATGGCATGCCCGCCTGGTTTCAAGGACGACG
GAGTCTCAGGTTGTATCAAACCCGCATCATACGGGCGCGGCGCAGGGTAT
GCATTGTGGAGAGAGGGTGCATGCAAGAAGGACAACCCGCAAGGTTGCGA
GAAGAACGGGGCATTGTGGTACCCGAAGTGTAAGGCAGGCTACCACAATG
TAGGCTGTTGCACGTGTTCGCCAGATTGTCCGGCGTCCTACAAAGATTAC
GGAGTTGGTTGCTCCCCTCCTGTAAAAAGCAGGGGGGTGGGCGTTCCC
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protein sequence of jgi.p|Trimin1|155428

>Trimin1|155428|gw1.228.55.1 ID=Trimin1|155428|gw1.228.55.1|Name=jgi.p|Trimin1|155428|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp
ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGY
ALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDY
GVGCSPPVKSRGVGVP
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mRNA from alignment at Contig_228:6135..6482+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11479 ID=mRNA_11479|Name=jgi.p|Trimin1|155428|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_228:6135..6482+ (Tribonema minus UTEX_B_3156 )
GAGCGTCAAGGTGCCCTTTGCTACCCGAGTTGTGATCCTGGATGGCAAGG TCGCTTGACAAGGTGTGTGATGGCATGCCCGCCTGGTTTCAAGGACGACG GAGTCTCAGGTTGTATCAAACCCGCATCATACGGGCGCGGCGCAGGGTAT GCATTGTGGAGAGAGGGTGCATGCAAGAAGGACAACCCGCAAGGTTGCGA GAAGAACGGGGCATTGTGGTACCCGAAGTGTAAGGCAGGCTACCACAATG TAGGCTGTTGCACGTGTTCGCCAGATTGTCCGGCGTCCTACAAAGATTAC GGAGTTGGTTGCTCCCCTCCTGTAAAAAGCAGGGGGGTGGGCGTTCCC
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Coding sequence (CDS) from alignment at Contig_228:6135..6482+

>mRNA_11479 ID=mRNA_11479|Name=jgi.p|Trimin1|155428|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_228:6135..6482+ (Tribonema minus UTEX_B_3156 )
GAGCGTCAAGGTGCCCTTTGCTACCCGAGTTGTGATCCTGGATGGCAAGG
TCGCTTGACAAGGTGTGTGATGGCATGCCCGCCTGGTTTCAAGGACGACG
GAGTCTCAGGTTGTATCAAACCCGCATCATACGGGCGCGGCGCAGGGTAT
GCATTGTGGAGAGAGGGTGCATGCAAGAAGGACAACCCGCAAGGTTGCGA
GAAGAACGGGGCATTGTGGTACCCGAAGTGTAAGGCAGGCTACCACAATG
TAGGCTGTTGCACGTGTTCGCCAGATTGTCCGGCGTCCTACAAAGATTAC
GGAGTTGGTTGCTCCCCTCCTGTAAAAAGCAGGGGGGTGGGCGTTCCC
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