mRNA_11479 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A835Z7X4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X4_9STRA) HSP 1 Score: 265 bits (678), Expect = 1.770e-90 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 Query: 1 ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348 ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP Sbjct: 1 ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 116
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A836CGJ8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ8_9STRA) HSP 1 Score: 222 bits (566), Expect = 2.250e-73 Identity = 96/117 (82.05%), Postives = 104/117 (88.89%), Query Frame = 1 Query: 1 ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQ-GCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348 E QGALCYPSC+ GW GRLTRCV CP GFKDD VSGCIKPASYGRGAGYALWRE ACKKDNP+ GC+K GALWYPKCKAGYHNVGCCTCSPDCP +KDYG+GC+PP+K+RG GVP Sbjct: 1 EHQGALCYPSCEGGWNGRLTRCVKECPAGFKDDNVSGCIKPASYGRGAGYALWREDACKKDNPKLGCQKYGALWYPKCKAGYHNVGCCTCSPDCPEGWKDYGIGCTPPMKNRGSGVP 117
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A0V0QX94_PSEPJ (Uncharacterized protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QX94_PSEPJ) HSP 1 Score: 139 bits (351), Expect = 2.610e-38 Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 1 Query: 1 ERQGALCYPSCDPGWQG-RLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVK-SRGVG 342 E+ G + YP C G+ C CP GF+DDG+ C KPA+YGRGAGYALW + C + QGCEKNGALWYPKC+ G+HNVGCC CSP+CP+ + D GV C P RGVG Sbjct: 113 EKWGLIIYPKCKQGYTNWECCVCANECPSGFRDDGLY-CAKPAAYGRGAGYALWDKQKCFDRHSQGCEKNGALWYPKCREGFHNVGCCICSPNCPSGWTDIGVSCKKPSSYGRGVG 227
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: T0PRZ5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PRZ5_SAPDV) HSP 1 Score: 141 bits (355), Expect = 4.910e-38 Identity = 70/120 (58.33%), Postives = 80/120 (66.67%), Query Frame = 1 Query: 1 ERQGALCYPSCDPGWQGRLTRCVM---ACP--PGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGV 345 E GALCYP C G++ + C+ C G D GVS C KP +YGRGAGYALW E CK+++ QGCEKNGALWYPKCKAG+HNVGCC CSPDCP S+ D G C RGVGV Sbjct: 191 EAYGALCYPKCKDGYEA-VGCCICRKKGCGGVDGANDIGVS-CTKPKAYGRGAGYALWDEDKCKRESSQGCEKNGALWYPKCKAGFHNVGCCICSPDCPESFLDDGAYCRKDSYGRGVGV 308
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: I7MES1_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MES1_TETTS) HSP 1 Score: 135 bits (340), Expect = 7.940e-37 Identity = 66/127 (51.97%), Postives = 80/127 (62.99%), Query Frame = 1 Query: 1 ERQGALCYPSCDPGWQG-RLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREG----------ACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348 E+ GA+ YP CD G+ C CPPGF+DDG C KP++YGRGAGY W+ G C+KDN QGCE+NG + YPKC+ G+HN GCC CSPDCP+ D GV C+ PV RGVG P Sbjct: 96 EQYGAIMYPKCDNGFFNVGCCLCASQCPPGFRDDGFF-CAKPSAYGRGAGYP-WQFGDAFNLDNATKRCEKDNSQGCEQNGLIIYPKCQQGFHNFGCCICSPDCPSGTVDIGVSCTKPVYGRGVGFP 220
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: I7LT73_TETTS (Uncharacterized protein n=4 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7LT73_TETTS) HSP 1 Score: 135 bits (340), Expect = 9.120e-37 Identity = 65/127 (51.18%), Postives = 81/127 (63.78%), Query Frame = 1 Query: 1 ERQGALCYPSCDPGWQG-RLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREG----------ACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348 E+ GA+ YP C+ G+ C +CPPGF+DDG+ C KP +YGRGAGY W+ G C+ +N QGCE+NG + YPKCK G+HNVGCC CSPDCP+ D GV C+ PV RGVG P Sbjct: 99 EQYGAIMYPKCEEGFYNVGCCLCESSCPPGFRDDGLF-CAKPEAYGRGAGYP-WKFGDSLNLNDASKRCQSENSQGCEQNGLVIYPKCKQGFHNVGCCICSPDCPSGTTDIGVSCTKPVYGRGVGFP 223
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A067BJF9_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BJF9_SAPPC) HSP 1 Score: 138 bits (348), Expect = 9.140e-37 Identity = 66/120 (55.00%), Postives = 80/120 (66.67%), Query Frame = 1 Query: 1 ERQGALCYPSCDPGWQGRLTRCVM---ACP--PGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGV 345 E GALCYP C G++ + C+ C G D GVS C KP++YGRG+GYA+W EG CK++N QGCEKNGA+WYPKC+ G+HNVGCC CSPDCP + D G C RGVGV Sbjct: 225 EAWGALCYPKCKEGYES-VGCCICRKKGCGGVKGATDIGVS-CAKPSAYGRGSGYAIWNEGKCKRENGQGCEKNGAMWYPKCEKGFHNVGCCICSPDCPEGFHDDGAFCRKDHYGRGVGV 342
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A835XJH2_9CHLO (WSC domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XJH2_9CHLO) HSP 1 Score: 136 bits (342), Expect = 5.260e-36 Identity = 62/116 (53.45%), Postives = 73/116 (62.93%), Query Frame = 1 Query: 1 ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348 E+ G LCYP C G+ G C CP F+DDG C KPA+YGRG GYALW + C +DNPQGCE NG L+YPKC AG++ GCC CSP CP+ D GV C+ R GVP Sbjct: 190 EQSGLLCYPPCQAGYTGVGPVCWQNCPSNFRDDGAF-CAKPAAYGRGTGYALWDQWKCVRDNPQGCELNGWLYYPKCAAGFYAFGCCICSPLCPSGMTDIGVSCAKQSYGRTAGVP 304
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: A0A1V9YIT2_9STRA (Uncharacterized protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIT2_9STRA) HSP 1 Score: 136 bits (342), Expect = 6.050e-36 Identity = 66/120 (55.00%), Postives = 77/120 (64.17%), Query Frame = 1 Query: 1 ERQGALCYPSCDPGWQGRLTRCVM---ACP--PGFKDDGVSGCIKPASYGRGAGYALWREGACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGV 345 E GALCYP C G++ + C+ C G D GVS C KPA+YGRG+GYA+W E C K+N QGCEKNGA+WYPKC G+HNVGCC CSPDCP+ D G C RGVGV Sbjct: 217 ESYGALCYPKCKEGYEA-IGCCICRKKGCSGVDGVTDIGVS-CTKPAAYGRGSGYAIWNEDKCNKENAQGCEKNGAMWYPKCGKGFHNVGCCICSPDCPSGTTDDGAYCRKDSYGRGVGV 334
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Match: I7MEW1_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MEW1_TETTS) HSP 1 Score: 133 bits (334), Expect = 6.110e-36 Identity = 65/127 (51.18%), Postives = 79/127 (62.20%), Query Frame = 1 Query: 1 ERQGALCYPSCDPGWQG-RLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYALWREG----------ACKKDNPQGCEKNGALWYPKCKAGYHNVGCCTCSPDCPASYKDYGVGCSPPVKSRGVGVP 348 E+ GA+ YP C+ G+ C CPPGF+DDG+ C KP SYGRGAGY W G C++DNPQGCE+NG + YPKC G+H+VGCC CSP CP+ D GV C+ PV RGVG P Sbjct: 99 EQYGAIMYPKCNDGFFNVGCCLCESQCPPGFRDDGLF-CAKPDSYGRGAGYP-WEFGDDLNLNDAYNRCQRDNPQGCEQNGLIIYPKCAQGFHSVGCCVCSPSCPSGTTDIGVSCTKPVYGRGVGFP 223 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155428 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11479 ID=mRNA_11479|Name=jgi.p|Trimin1|155428|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_228:6135..6482+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAGCGTCAAGGTGCCCTTTGCTACCCGAGTTGTGATCCTGGATGGCAAGGback to top protein sequence of jgi.p|Trimin1|155428 >Trimin1|155428|gw1.228.55.1 ID=Trimin1|155428|gw1.228.55.1|Name=jgi.p|Trimin1|155428|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp ERQGALCYPSCDPGWQGRLTRCVMACPPGFKDDGVSGCIKPASYGRGAGYback to top mRNA from alignment at Contig_228:6135..6482+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11479 ID=mRNA_11479|Name=jgi.p|Trimin1|155428|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_228:6135..6482+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_228:6135..6482+ >mRNA_11479 ID=mRNA_11479|Name=jgi.p|Trimin1|155428|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_228:6135..6482+ (Tribonema minus UTEX_B_3156 )back to top |