Homology
BLAST of jgi.p|Trimin1|133273 vs. uniprot
Match:
A0A835YRZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ7_9STRA)
HSP 1 Score: 102 bits (254), Expect = 6.040e-19
Identity = 54/58 (93.10%), Postives = 54/58 (93.10%), Query Frame = -2
Query: 1419 TDSWSIXXXXPVAEPLPINTAPLLPDPDAPELSVNMPLTPLAPPSPVNSDSAPPSLTA 1592
TDSWSI PVAEPLPINTAPLLPDPDAPELSVNMPLTPLAPPSPVNSDSAPPSLTA
Sbjct: 291 TDSWSIPPPPPVAEPLPINTAPLLPDPDAPELSVNMPLTPLAPPSPVNSDSAPPSLTA 348
BLAST of jgi.p|Trimin1|133273 vs. uniprot
Match:
A0A836C8V5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8V5_9STRA)
HSP 1 Score: 81.3 bits (199), Expect = 1.160e-12
Identity = 114/126 (90.48%), Postives = 114/126 (90.48%), Query Frame = -2
Query: 3393 ESPVPLTTCTLPPSVLPAPPARSXXXXXXXXXXXXXXXXXXXDMDSPDCXXXXXXXXXXXXXXXXXXXXXEPPMAAPXXXXXXXXXXXXXXXXXXXXXXLAXAAPLAPDTMLTAPLRPLAPVPVAR 3770
ESPVPLTTCTLPP VLPAPPA XXXXXXXXXXX X XXDMDS XXXXXXXXXXXXXXXXXXXXXEPPMAAP XXXXXXXXXXXXXXXXXXXXXLAXAAPLAPDTMLTAPLRPLAPVPVAR
Sbjct: 189 ESPVPLTTCTLPPPVLPAPPAXXXXXXXXXXXXXAXTAMAXXDMDSXXXXXXXXXXXXXXXXXXXXXXXXEPPMAAPLXXXXXXXXXXXXXXXXXXXXXLAXAAPLAPDTMLTAPLRPLAPVPVAR 314
BLAST of jgi.p|Trimin1|133273 vs. uniprot
Match:
A0A835YLI4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLI4_9STRA)
HSP 1 Score: 82.0 bits (201), Expect = 7.100e-12
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1
Query: 1 MTGGQVSISSGSSRFSSSGQLVLKTPNAGLAGTSGPIMLSTGTSS 135
MTGGQVSISSGSSRFSSSGQLVLKTPNAGLAGTSGPIMLSTGTSS
Sbjct: 1 MTGGQVSISSGSSRFSSSGQLVLKTPNAGLAGTSGPIMLSTGTSS 45
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133273 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 6.04e-19 / Id = 93.10 Expect = 1.16e-12 / Id = 90.48 Expect = 7.10e-12 / Id = 100.00 Sequence A0A835YRZ7_9STRA A0A836C8V5_9STRA A0A835YLI4_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
ProteomeId Trimin1|133273|gw1.76.44.1 Hectar predicted targeting category other localisation TranscriptId 133595 Track FilteredModels1 ProteinId 133273
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA
>mRNA_11394 ID=mRNA_11394|Name=jgi.p|Trimin1|133273|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3876bp|location=Sequence derived from alignment at Contig_76:661065..667448+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGACCGGAGGGCAAGTGAGCATATCTTCAGGTTCAAGCAGATTTTCGTC back to top protein sequence of jgi.p|Trimin1|133273
>Trimin1|133273|gw1.76.44.1 ID=Trimin1|133273|gw1.76.44.1|Name=jgi.p|Trimin1|133273|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1292bp
MTGGQVSISSGSSRFSSSGQLVLKTPNAGLAGTSGPIMLSTGTSSLGNSG back to top mRNA from alignment at Contig_76:661065..667448+
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11394 ID=mRNA_11394|Name=jgi.p|Trimin1|133273|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6384bp|location=Sequence derived from alignment at Contig_76:661065..667448+ (Tribonema minus UTEX_B_3156 )ATGACCGGAGGGCAAGTGAGCATATCTTCAGGTTCAAGCAGATTTTCGTC
CAGCGGGCAGCTTGTTTTAAAAACTCCGAATGCTGGACTTGCTGGCACCA
GTGGCCCCATCATGTTGAGTACAGGCACCTCTAGTTTGGGTAACAGTGGG
CTAATATCTTTGCAAACAGCCTCTGCCCGGTTTGGACGTGGCGGCTCAGT
GCATGTCATCGTAGGAAGTGGCACGAGCGGTGCGGGTGGCGACATCCAGC
TTGCGGCCGGATCCACAAGTGCAGTTGACG GCACTGGTGGTGCTCTGCGGC
TTCTCAGTGGGCAGGGGATGGCAATGTCCAGCGGCGCAGTGATGCTTGCC
TCAGCAGGTGCTGGCACAGCTGGAGTCAGCGGCTCTGTCACATTGATGTC
TGGTACTGCAGCAGCAGGCAGCAGTGGTGCCCTTATGCTCAGCTCCGGGC
AGGCACACAATGGTCATGGAGGGGCCATCTCCCTCGCAGTAGGCGCTGGT
GACAGTGGAGTTGGCGGCGGCATCAGCCTTACAGCGGGAACAAGTGCTGC
TGCCACTGGTGGCCCAATTACCGTAAGCAGCGGTGTGGGGGCAGCATCGA
ACAGCGGTTCAGTAAACATGCTCACAGCAGATGCAGGCACTGCAGGCATC
AGTGGCACGCTGAGCCTTTACACTGGCGCATCAAGTCAGGGCAATTCTGG
CTCACTTCTCATGCGCACAGGGCCTGCAACAGGAGGCAGTGGAGGTGAGA
TCCGCCTTACAGTGGGGTCGTCTACAAGCGGCAAAGGTGGAGATTTGACA
GCCATGGCTGGTGCAAGTGACTTTTCTGCTGGTGGTTCTATTGTGCTCAA
ATCAGGAGCCAGCTCCATGATGAGCAGCGGTGCCATATACGCACAGACGT
CTGATGCTGGAGCCACTGGCGCCAGTGGCGCCCTTTCTTTTGCATCTGGC
ACCACCACTTTTGGTGACAGCGGTGCAATCATCTTGTCTACGGGCACTGC
CACTCAAGGGCGGGGCGGGGGCATACAGCTCTCGGTTGGCAGCGGAGATA
CTGGCAACGGTGGTGGAGTGGATGTGCGGGCTGGCAGTAGTCAGACTGGC
ACTGGTGGAGCTATTAACATAACGAGTGGGTCCAGTGTGACCTCTAGCAG
CGGAGATGCATCAATCTTTACCTCTGATGCAGGCGCAGCTGGATCCAGTG
GCCA TGGCTCACTTGTGCTGAGTTCAGG
AGTTGCCAGGGACGGCGATTCTGGTGCTGTACTTGTCGGCAGTGGCAGCG
CCTCAGGCGGAGTCGGGGGCCCTGTAAGTCTGACTGTGGGCAGCGGTGAC
TCTGGTGCTGGTGGTGAATTGCTTTTGGCATCAGGGGCATCCACAACTGG
CGGCGCG GGAGGCGCAGTGGCTGTC
AAGACCGGAAGCGGCGCAGTCAATGATGGCGGCGCACTGTCGCTGTTGAC
AGGCGACGGTGGTGCAAGCGGAGTCAGCGGCATGTTGACGCTGAGCTCGG
GTGCATCAGGGTCAGGCAACAGCGGCGCAGTGTTGATCGGCAGCGGTTCA
GCCACTGGTGGAGGTGGAGGTATGCTCCAGCTGTCTGTGGGCAGTGGCGA
TGCTGGTCCAGGAGGCGCATTGGTGCTGAT TGCAGGGTCTAGCACTTC
CTCCACTGGAGGTGCAGTCAGCATCATCAGCGGAGCAAGCACGTCGTCTG
CTAGTGGGGAAGTGCGTGTGCTGTCTGCAGATGGCGGAGCCTCGGCTGGT
AGCGGCTCGCTCGTCTTCAGCTCAGGCGCATCAGCGACCGGCAACACTGG
CTCTCTGCTGGTAGGTAGCGGGTCGTCCACCGATGGAGTTGGAGGAGACC
TGAGCCTGACGGTAGGCAGTGGTACCACCGGCACAGGCGGCCAGGTAGTC
CTCAGTGCCGGGCA CCTTGCAGCA
GGCACTGGTGCTATTGGCGGTGCTTTCTCTGTCAGCAGCGGCAGCGGCAA
CTCTGGCAACAGCGGGGCTGTGTCAGTACAGTCTGGCGATGCTGCTTTGG
CAGGCGTCAGCGGAGATGTATCAGTCAGCTCCGGCACAGCTGCTCTCGGC
ACCACTGGTGCAGTACGTATCGGCACTGGTGTTTCCACTGCGGGCAGCGG
AGGCGAGCTGAGCCTGACTGTAGGGTCCGGCACTGTTGGTGAAGGAGGTG
CAGTCGTGATCGAGGCAGGACTGTCCGCCAGTGGTGGTGCCGTCAGCATA
GCAGCAGGCACAGGTACTGCCGGCGACGGTGGCAGTGTCCGCGTGACAGC
TGGCGATGGCAGCTCCACTGGTGGCGCTTTGTCCTTCGCAAGTGGTGCAG
CATCCTCCGGTAACAGCGGAGCAGTCAGACTTGTTTCAGGGTCCAGCAGT
GCATCTGGCGCCAGTGGCAATCTTGTGTTCAGCTCTGGGACATCATCATC
GGGTCCAAGTGGCTCTGTCTTGATTGGCAGCGGCACAGCTAGTGAAGGGG
CCGGCGGGCAGTTGAGCCTTGTTGTTGGCTCAGGAACGTCAGGTGCTGGT
GGAGGTGTTGTTGTACAAGCAGGCCAGTCCACAGTCGGTGGTGCTGTCAC
CATTGCTGCAGGAAGCGGCACGAGCAGTGCTGGAG GTTCTGTCAGCTTGGCTTCTGGAGACAGTGG
CTCAAGCGGTGTGAGCGGCAATCTTGCTCTGCGGTCCGGTGCTTCTGGTG
CAGGTGACAGTGGTGCTGTTGAGATCACTACAGGAGGTGCCACAGGCGGC
AGAGGCGGTGCCTTGAGCCTGACCGTCGGCAGCGGCACCAGCGGTGCAGG
TGGGGCTCTGCAGCTGACTGCAGGATTCAGCAGCGGCGGCGACGGTGGCA
ACGTCGACCTCAGCAGTGGTTCATCCAACAGTGCGGCAAGTGGCGACGTC
AGTGTTGCATCTGCTGCTGGCACAATGTCTGGCAAGCTGGTGCTGAGCTC
TGGCGCATCGAGGTCTGGCAGCACAGGTGGTGTACTTGTCGGCAGTGGCA
ACGCCTCAGGCGGAGTCGGGGGCCCCGTAAGTCTAACTGTGGGCAGCGGT
GACTCTGGTGCTGGTGGTGATTTGCTGATGGCGTCAGGGGCATCCACAAC
TGGCGGCGCGGTCAGTATTGCTGCCGGTGCTGGCACAAGCAGTGATGGTG
GTGCCATTAACCTCCTGTCTG GCGACGGCGGTGCAAGCGGAGTCAGCGGCATGTTGACGCTGAGCT
CGGGTGCATCAGGGTCAGGCAACAGCGGCGCAGTGTTGATCGGCAGCGGT
TCAGCCACTGGTGGAGGTGGAGGTATGCTCCAGCTGTCTGTGGGCAGTGG
CGATGCTGGTCCAGGAGGCGCATTGGTGCTGATGTCAGGACAAGCAGCCA
CGGGCG GCAGCGGCTCCAGCAGTGGTGCACTTCA
CCTGGCGACTGGCACCGGAGCGAGTGGCCGCAGCGGTGCTGTTAGCATCG
TATCTGGTGCAAGTGGAGCTGCGGGGGCAAGCGGCGAGCTTGTGCTCAGC
ACTGGCACATCCCAGTCTGGCACTAGCGGCGCTGTGTCAATCGGCAGCGG
CGCAGCCATGGGAGGTTCTGGCGGGAAGCTGAGCCTGGTGGTTGGCCCAG
GCAGCTCTGGCACAGGTGGAGATGTGCTGGTGCAGTCAGGGGAATCCATG
TCAGGTGGTGCCATAGCGGTTGTGGCAGGTACAGGTTCAAGCGGCACCGG
CGGCGCAGTGCTCCTTGCTGGTGGTGCTGGTAGCACTGATGGCGGCAATG
TGCAGGTGGTCAGTGGCACAGGGCTCTCTGGGGCAAGCGGCGCAGTTTCT
GTTGCTTCTGCACCCACAGCTGCTGGCATGAGTGGCACAGTGACACTTGG
CTCTGGCAGCAGCAGTGCTGCCAGCACTGGATCT back to top Coding sequence (CDS) from alignment at Contig_76:661065..667448+
>mRNA_11394 ID=mRNA_11394|Name=jgi.p|Trimin1|133273|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=3876bp|location=Sequence derived from alignment at Contig_76:661065..667448+ (Tribonema minus UTEX_B_3156 ) back to top