mRNA_11325 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350947
Unique NamemRNA_11325
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350947 vs. uniprot
Match: A0A835YK77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK77_9STRA)

HSP 1 Score: 453 bits (1165), Expect = 5.940e-160
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 1 
Query:    1 MSSVSVNASMLGKRSADADTVLDSDRGTSVRIKQAAAAAPGAPAAADDVANTYSLRERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKELERVHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIVAQ 714
            MSSVSVNASMLGKRSADADTVLDSDRGTSVRIKQAAAAAPGAPAAADDVANTYSLRERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKELERVHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIVAQ
Sbjct:    1 MSSVSVNASMLGKRSADADTVLDSDRGTSVRIKQAAAAAPGAPAAADDVANTYSLRERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKELERVHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIVAQ 238
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BLAST of jgi.p|Trimin1|350947 vs. uniprot
Match: A0A835YMR6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR6_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.930e-49
Identity = 104/219 (47.49%), Postives = 134/219 (61.19%), Query Frame = 1 
Query:  169 ERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKE---------------------------------------LERVHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIV 708
            +R+Y+M+  EA +AGIIVP+ FILP  VDV  AGI  +AEFI TA MR+   PRR + Y PTIA ATE+  L  +E                                       +  VH+FDDGI+IPAVD +FI+  VGD  L+MQ A R  R+YPGK++ATV+VW+ PE MIDLCQD PGWEQ +  MAPSL+  DRS E+ A+ +A++VI+R IV
Sbjct:  165 DRQYIMTITEAIDAGIIVPQRFILPHNVDVDTAGIETRAEFIVTATMRLGYGPRRHLLYSPTIADATEIVRLLKEEFAQQSMHMEARIITGTTPAAERDATIKWMSEGDRNHVRVISSVHVFDDGIDIPAVDCVFINS-VGDHNLYMQRAFRSVRLYPGKEVATVMVWNTPEAMIDLCQDHPGWEQTIHFMAPSLKNVDRSAEKAAMQKAISVIRRRIV 382
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BLAST of jgi.p|Trimin1|350947 vs. uniprot
Match: A0A836CFY2_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY2_9STRA)

HSP 1 Score: 178 bits (452), Expect = 2.650e-49
Identity = 105/219 (47.95%), Postives = 134/219 (61.19%), Query Frame = 1 
Query:  169 ERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKEL-------------------ER--------------------VHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIV 708
            +R+Y+M+  EA  AGIIVP+ FILP  VDV  AGI  +AEFIAT  MR+   PRRL+ + PT+A A ++  L  +EL                   ER                    VH+FD+GI+IPAVD +FI+ TVGD  L++Q A R  R+YPGK IATV+VWS PE M+D+CQDRPGWEQ L VM P L + DR+ E+ A   A++VIQRGIV
Sbjct:  212 DRQYIMTITEAIAAGIIVPQRFILPHNVDVNTAGIETQAEFIATVTMRLGYGPRRLLLFSPTVADAKKIMGLLERELASYDMHMEARVITGATPAAERDATIRWMSEGDRKHVRVISSVHVFDEGIDIPAVDCVFIN-TVGDHNLYIQRAFRSVRLYPGKTIATVMVWSTPETMVDVCQDRPGWEQTLQVMTPCLNKTDRAAEKAATETAISVIQRGIV 429
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BLAST of jgi.p|Trimin1|350947 vs. uniprot
Match: A0A836CIJ5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIJ5_9STRA)

HSP 1 Score: 177 bits (449), Expect = 5.730e-47
Identity = 104/218 (47.71%), Postives = 132/218 (60.55%), Query Frame = 1 
Query:  172 RRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKELER---------------------------------------VHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIV 708
            R+Y+M+  EA + GIIVP+ +ILPR VDV AAGI  +AEFI TA MR+   PRR + Y PTIA ATE+  L   E  R                                       VH+FDDGI+IPAVD +FI ++VG+  L+ Q A R  R+Y GK+IATV+VWS PE M+DLCQD PGWEQ +  MAPSL+  DR+ E+ AV +A++VI RGIV
Sbjct:  374 RQYIMTITEAIDTGIIVPQRYILPRNVDVDAAGIETQAEFIVTATMRLGYGPRRHLLYSPTIADATEIVRLLEAEFARQSMHMEARIITGTTPAAERDATIKWMSKGDRNHVRVISSVHVFDDGIDIPAVDCVFI-QSVGEHNLYRQRAFRSVRLYAGKEIATVMVWSTPEAMVDLCQDHPGWEQTIHSMAPSLKNVDRAAEKEAVQKAISVIGRGIV 590
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BLAST of jgi.p|Trimin1|350947 vs. uniprot
Match: A0A835Z7N7_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7N7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.230e-26
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:  169 ERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKELER 405
            ERRYLMS KEAEEAGIIVP+ FI+P  V+++ AGIPIKAEFIAT +MRIT PPRRLI+YQPTIAAATELA+LAV EL R
Sbjct:  371 ERRYLMSRKEAEEAGIIVPQRFIIPCSVNISTAGIPIKAEFIATTIMRITDPPRRLITYQPTIAAATELAKLAVNELAR 449
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BLAST of jgi.p|Trimin1|350947 vs. uniprot
Match: A0A836CJN2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.140e-12
Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 1 
Query:  175 RYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAV---------------------KELER------------------VHIFDDGINIPAVDGIFIDKTVGDDCLHMQ 495
            RY M+  +AE+AGIIVP+ F+LP  V++    + ++AEFIAT  MR++  PRR I Y   +  A +LA L V                      E ER                  VH+ D+GI+IPAVD ++I  T GD+C ++Q
Sbjct:  458 RYTMTISDAEKAGIIVPQRFVLPCNVNLDEDNLEMRAEFIATTTMRLSDSPRRHILYSFNVRQAQQLANLVVVGFRRNGMVAEAEVVTGDTPNAERERIFKWMSEGTRKVVRIISSVHVLDEGIDIPAVDCVYIGGTGGDNCRYVQ 603
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350947 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YK77_9STRA5.940e-160100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YMR6_9STRA1.930e-4947.49P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CFY2_9STRA2.650e-4947.95Helicase C-terminal domain-containing protein n=1 ... [more]
A0A836CIJ5_9STRA5.730e-4747.71P-loop containing nucleoside triphosphate hydrolas... [more]
A0A835Z7N7_9STRA1.230e-2678.48Helicase ATP-binding domain-containing protein n=1... [more]
A0A836CJN2_9STRA2.140e-1235.62P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_76contigContig_76:38929..39871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350947|estExt_Genemark1.C_Ctg_760006
Hectar predicted targeting categoryother localisation
TranscriptId351269
TrackFilteredModels1
ProteinId350947
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350947gene_11325Tribonema minus UTEX_B_3156 geneContig_76 38929..39871 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11325_1exon_11325_1Tribonema minus UTEX_B_3156 exonContig_76 38929..39332 +
exon_11325_2exon_11325_2Tribonema minus UTEX_B_3156 exonContig_76 39430..39871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11325CDS_11325Tribonema minus UTEX_B_3156 CDSContig_76 38929..39332 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11325UTR3_11325Tribonema minus UTEX_B_3156 three_prime_UTRContig_76 39743..39871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350947Trimin1|350947|estExt_Genemark1.C_Ctg_760006Tribonema minus UTEX_B_3156 polypeptideContig_76 38929..39742 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11325 ID=mRNA_11325|Name=jgi.p|Trimin1|350947|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=846bp|location=Sequence derived from alignment at Contig_76:38929..39871+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCAGTTTCCGTCAACGCTAGCATGCTCGGCAAGCGGTCCGCTGA
CGCCGATACTGTGCTGGACAGTGACAGGGGAACTTCTGTCCGAATCAAAC
AAGCCGCCGCCGCCGCGCCTGGCGCACCCGCCGCTGCGGATGACGTTGCC
AACACCTACAGCCTCAGGGAGCGGCGATATCTCATGTCCAGCAAGGAGGC
GGAGGAGGCTGGGATAATCGTGCCACGGCCGTTCATACTCCCCCGCATCG
TCGATGTCGCCGCCGCTGGCATACCTATCAAGGCAGAATTTATTGCCACA
GCCATGATGCGAATCACGGCCCCCCCAAGGCGTCTCATTTCATACCAGCC
TACCATAGCCGCCGCAACAGAGCTGGCAGAGCTCGCCGTGAAGGAGCTGG
AGCGCGTCCACATCTTCGACGACGGCATCAACATACCAGCCGTCGACGGC
ATCTTCATCGATAAAACCGTTGGCGACGACTGCCTACACATGCAGTGGGC
CGGGCGCTGCACAAGAATGTATCCCGGCAAGAAGATCGCCACTGTCCTTG
TCTGGAGTGCACCGGAGCACATGATCGACCTGTGCCAAGACCGCCCTGGC
TGGGAGCAGCGGCTCTCCGTCATGGCGCCATCCCTCGAAGAGGCAGACAG
GAGCAAGGAGAGAACGGCGGTTGCGGAAGCAGTCGCTGTCATTCAGAGGG
GAATTGTGGCACAGTGACACAGAGCACATTGGTCGTCATTGATGGTGAGA
CGTATAGTGTGGGTTCATGGCAAAAAAAGCAGCGCAAAAATAAGGAAAAT
CTGTCCCGGATGGGCCATTGAGCGGAGGGCAAGTATGGCACACGTG
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protein sequence of jgi.p|Trimin1|350947

>Trimin1|350947|estExt_Genemark1.C_Ctg_760006 ID=Trimin1|350947|estExt_Genemark1.C_Ctg_760006|Name=jgi.p|Trimin1|350947|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=239bp
MSSVSVNASMLGKRSADADTVLDSDRGTSVRIKQAAAAAPGAPAAADDVA
NTYSLRERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIAT
AMMRITAPPRRLISYQPTIAAATELAELAVKELERVHIFDDGINIPAVDG
IFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPG
WEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIVAQ*
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mRNA from alignment at Contig_76:38929..39871+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11325 ID=mRNA_11325|Name=jgi.p|Trimin1|350947|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=943bp|location=Sequence derived from alignment at Contig_76:38929..39871+ (Tribonema minus UTEX_B_3156 )
ATGTCTTCAGTTTCCGTCAACGCTAGCATGCTCGGCAAGCGGTCCGCTGA
CGCCGATACTGTGCTGGACAGTGACAGGGGAACTTCTGTCCGAATCAAAC
AAGCCGCCGCCGCCGCGCCTGGCGCACCCGCCGCTGCGGATGACGTTGCC
AACACCTACAGCCTCAGGGAGCGGCGATATCTCATGTCCAGCAAGGAGGC
GGAGGAGGCTGGGATAATCGTGCCACGGCCGTTCATACTCCCCCGCATCG
TCGATGTCGCCGCCGCTGGCATACCTATCAAGGCAGAATTTATTGCCACA
GCCATGATGCGAATCACGGCCCCCCCAAGGCGTCTCATTTCATACCAGCC
TACCATAGCCGCCGCAACAGAGCTGGCAGAGCTCGCCGTGAAGGAGCTGG
AGCGGTCCGGCATGCATGCTAAGGCGCGTGTAGTCACGGGCAAACTGTCT
CAAGCGGAGAGGGATGCCATGATCATATGGCTATGTCCGGCTGCTTTCAA
GCGTCCACATCTTCGACGACGGCATCAACATACCAGCCGTCGACGGCATC
TTCATCGATAAAACCGTTGGCGACGACTGCCTACACATGCAGTGGGCCGG
GCGCTGCACAAGAATGTATCCCGGCAAGAAGATCGCCACTGTCCTTGTCT
GGAGTGCACCGGAGCACATGATCGACCTGTGCCAAGACCGCCCTGGCTGG
GAGCAGCGGCTCTCCGTCATGGCGCCATCCCTCGAAGAGGCAGACAGGAG
CAAGGAGAGAACGGCGGTTGCGGAAGCAGTCGCTGTCATTCAGAGGGGAA
TTGTGGCACAGTGACACAGAGCACATTGGTCGTCATTGATGGTGAGACGT
ATAGTGTGGGTTCATGGCAAAAAAAGCAGCGCAAAAATAAGGAAAATCTG
TCCCGGATGGGCCATTGAGCGGAGGGCAAGTATGGCACACGTG
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Coding sequence (CDS) from alignment at Contig_76:38929..39871+

>mRNA_11325 ID=mRNA_11325|Name=jgi.p|Trimin1|350947|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=717bp|location=Sequence derived from alignment at Contig_76:38929..39871+ (Tribonema minus UTEX_B_3156 )
ATGTCTTCAGTTTCCGTCAACGCTAGCATGCTCGGCAAGCGGTCCGCTGA
CGCCGATACTGTGCTGGACAGTGACAGGGGAACTTCTGTCCGAATCAAAC
AAGCCGCCGCCGCCGCGCCTGGCGCACCCGCCGCTGCGGATGACGTTGCC
AACACCTACAGCCTCAGGGAGCGGCGATATCTCATGTCCAGCAAGGAGGC
GGAGGAGGCTGGGATAATCGTGCCACGGCCGTTCATACTCCCCCGCATCG
TCGATGTCGCCGCCGCTGGCATACCTATCAAGGCAGAATTTATTGCCACA
GCCATGATGCGAATCACGGCCCCCCCAAGGCGTCTCATTTCATACCAGCC
TACCATAGCCGCCGCAACAGAGCTGGCAGAGCTCGCCGTGAAGGAGCTGG
AGCGCGTCCACATCTTCGACGACGGCATCAACATACCAGCCGTCGACGGC
ATCTTCATCGATAAAACCGTTGGCGACGACTGCCTACACATGCAGTGGGC
CGGGCGCTGCACAAGAATGTATCCCGGCAAGAAGATCGCCACTGTCCTTG
TCTGGAGTGCACCGGAGCACATGATCGACCTGTGCCAAGACCGCCCTGGC
TGGGAGCAGCGGCTCTCCGTCATGGCGCCATCCCTCGAAGAGGCAGACAG
GAGCAAGGAGAGAACGGCGGTTGCGGAAGCAGTCGCTGTCATTCAGAGGG
GAATTGTGGCACAGTGA
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