Trimin1|350947|estExt_Genemark1.C_Ctg_760006 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350947
Unique NameTrimin1|350947|estExt_Genemark1.C_Ctg_760006
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length239
Homology
BLAST of jgi.p|Trimin1|350947 vs. uniprot
Match: A0A835YK77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK77_9STRA)

HSP 1 Score: 452 bits (1164), Expect = 1.510e-160
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query:    1 MSSVSVNASMLGKRSADADTVLDSDRGTSVRIKQAAAAAPGAPAAADDVANTYSLRERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKELERVHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIVAQ 238
            MSSVSVNASMLGKRSADADTVLDSDRGTSVRIKQAAAAAPGAPAAADDVANTYSLRERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKELERVHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIVAQ
Sbjct:    1 MSSVSVNASMLGKRSADADTVLDSDRGTSVRIKQAAAAAPGAPAAADDVANTYSLRERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKELERVHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIVAQ 238          
BLAST of jgi.p|Trimin1|350947 vs. uniprot
Match: A0A836CIJ5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIJ5_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.400e-47
Identity = 104/218 (47.71%), Postives = 132/218 (60.55%), Query Frame = 0
Query:   58 RRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKELER---------------------------------------VHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIV 236
            R+Y+M+  EA + GIIVP+ +ILPR VDV AAGI  +AEFI TA MR+   PRR + Y PTIA ATE+  L   E  R                                       VH+FDDGI+IPAVD +FI ++VG+  L+ Q A R  R+Y GK+IATV+VWS PE M+DLCQD PGWEQ +  MAPSL+  DR+ E+ AV +A++VI RGIV
Sbjct:  374 RQYIMTITEAIDTGIIVPQRYILPRNVDVDAAGIETQAEFIVTATMRLGYGPRRHLLYSPTIADATEIVRLLEAEFARQSMHMEARIITGTTPAAERDATIKWMSKGDRNHVRVISSVHVFDDGIDIPAVDCVFI-QSVGEHNLYRQRAFRSVRLYAGKEIATVMVWSTPEAMVDLCQDHPGWEQTIHSMAPSLKNVDRAAEKEAVQKAISVIGRGIV 590          
BLAST of jgi.p|Trimin1|350947 vs. uniprot
Match: A0A836CFY2_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 3.440e-32
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 0
Query:  130 VKELERVHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIV 236
            V+ +  VH+FD+GI+IPAVD +FI+ TVGD  L++Q A R  R+YPGK IATV+VWS PE M+D+CQDRPGWEQ L VM P L + DR+ E+ A   A++VIQRGIV
Sbjct:  324 VRVISSVHVFDEGIDIPAVDCVFIN-TVGDHNLYIQRAFRSVRLYPGKTIATVMVWSTPETMVDVCQDRPGWEQTLQVMTPCLNKTDRAAEKAATETAISVIQRGIV 429          
BLAST of jgi.p|Trimin1|350947 vs. uniprot
Match: A0A835YMR6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.180e-31
Identity = 78/167 (46.71%), Postives = 102/167 (61.08%), Query Frame = 0
Query:   75 PRPFIL--PRIVDVAAAGIPIKAEFIATAM---MRITAPPRRLISYQPTIAAATELAELAVKELERVHIFDDGINIPAVDGIFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPGWEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIV 236
            PR  +L  P I D       +K EF   +M    RI            TI   +E     V+ +  VH+FDDGI+IPAVD +FI+  VGD  L+MQ A R  R+YPGK++ATV+VW+ PE MIDLCQD PGWEQ +  MAPSL+  DRS E+ A+ +A++VI+R IV
Sbjct:  217 PRRHLLYSPTIADATEIVRLLKEEFAQQSMHMEARIITGTTPAAERDATIKWMSEGDRNHVRVISSVHVFDDGIDIPAVDCVFINS-VGDHNLYMQRAFRSVRLYPGKEVATVMVWNTPEAMIDLCQDHPGWEQTIHFMAPSLKNVDRSAEKAAMQKAISVIRRRIV 382          
BLAST of jgi.p|Trimin1|350947 vs. uniprot
Match: A0A835Z7N7_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7N7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.880e-27
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 0
Query:   57 ERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIATAMMRITAPPRRLISYQPTIAAATELAELAVKELER 135
            ERRYLMS KEAEEAGIIVP+ FI+P  V+++ AGIPIKAEFIAT +MRIT PPRRLI+YQPTIAAATELA+LAV EL R
Sbjct:  371 ERRYLMSRKEAEEAGIIVPQRFIIPCSVNISTAGIPIKAEFIATTIMRITDPPRRLITYQPTIAAATELAKLAVNELAR 449          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350947 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YK77_9STRA1.510e-160100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIJ5_9STRA1.400e-4747.71P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CFY2_9STRA3.440e-3259.81Helicase C-terminal domain-containing protein n=1 ... [more]
A0A835YMR6_9STRA3.180e-3146.71P-loop containing nucleoside triphosphate hydrolas... [more]
A0A835Z7N7_9STRA3.880e-2778.48Helicase ATP-binding domain-containing protein n=1... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 100..194
e-value: 4.3E-6
score: 28.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_76contigContig_76:38929..39742 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350947mRNA_11325Tribonema minus UTEX_B_3156 mRNAContig_76 38929..39871 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350947|estExt_Genemark1.C_Ctg_760006 ID=Trimin1|350947|estExt_Genemark1.C_Ctg_760006|Name=jgi.p|Trimin1|350947|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=239bp
MSSVSVNASMLGKRSADADTVLDSDRGTSVRIKQAAAAAPGAPAAADDVA
NTYSLRERRYLMSSKEAEEAGIIVPRPFILPRIVDVAAAGIPIKAEFIAT
AMMRITAPPRRLISYQPTIAAATELAELAVKELERVHIFDDGINIPAVDG
IFIDKTVGDDCLHMQWAGRCTRMYPGKKIATVLVWSAPEHMIDLCQDRPG
WEQRLSVMAPSLEEADRSKERTAVAEAVAVIQRGIVAQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase