mRNA_11297 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174646
Unique NamemRNA_11297
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174646 vs. uniprot
Match: A0A836CM42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM42_9STRA)

HSP 1 Score: 325 bits (832), Expect = 1.300e-105
Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 1 
Query:    1 MHRDVKPVVALLVLGPHGSPTAAAAFASKHVVHVKLRGRFKVDPLRVAWQESSFHKTVCVLTLEAYDGAALAHLPRSLQQLHIGCCDPVRVHHTLHALSEPGAAPALTSLSLHSCKTLRALPDALGQLMTLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVSFTDFPALRQLEVAGCQQPVSAAADAWNRARWRRGGSSAQCAAPLPPRAAAXXAAGVDMDVAAA 1143
            MHRDVKPVVALLVLGPHGSPTAAAAFASKHVVHVKLRGRFKVDPLRVAWQESSFHKTVCVLTLEAYDGAALAHLPRSLQQLHIGCCDPVRVHHTLHALSEPGAAPALTSLSLHSCKTLRALPDALGQLMTLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVSFTDFPALRQLEVAGCQQPVSAAADAWNRARWRRGGSSAQCAAPLPPRAAAXXAAGVDMDVAAA
Sbjct:    1 MHRDVKPVVALLVLGPHGSPTAAAAFASKHVVHVKLRGRFKVDPLRVAWQESSFHKTVCVLTLEAYDGAALAHLPRSLQQLHIGCCDPVRVHHTLHALSEPGAAPALTSLSLHSCKTLRALPDALGQLMTLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVSFTDFPALRQLEVAGCQQPVSAAADAWNRARWRRGGSSAQCAAPLPPRAAAXXAAGVDMDVAAA 381
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174646 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CM42_9STRA1.300e-105100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_116contigContig_116:324624..325769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174646|e_gw1.116.41.1
Hectar predicted targeting categorychloroplast
TranscriptId174968
TrackFilteredModels1
ProteinId174646
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174646gene_11297Tribonema minus UTEX_B_3156 geneContig_116 324624..325769 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11297_1exon_11297_1Tribonema minus UTEX_B_3156 exonContig_116 324624..325769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11297CDS_11297Tribonema minus UTEX_B_3156 CDSContig_116 324624..325769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174646Trimin1|174646|e_gw1.116.41.1Tribonema minus UTEX_B_3156 polypeptideContig_116 324624..325769 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11297 ID=mRNA_11297|Name=jgi.p|Trimin1|174646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1146bp|location=Sequence derived from alignment at Contig_116:324624..325769+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAGGGACGTGAAGCCTGTTGTGGCGCTGCTCGTTCTTGGGCCGCA
CGGTTCTCCGACAGCAGCTGCCGCGTTCGCCAGCAAGCATGTCGTCCATG
TCAAGCTCCGCGGACGGTTCAAAGTAGACCCACTGCGCGTTGCATGGCAA
GAGTCTAGCTTCCACAAGACAGTCTGCGTGCTCACCTTAGAGGCGTATGA
TGGGGCAGCGCTTGCGCACCTGCCACGCAGTCTGCAGCAGCTCCACATCG
GATGCTGCGATCCCGTGCGCGTGCATCACACGCTTCACGCCTTGAGCGAG
CCAGGCGCTGCCCCAGCGCTGACGTCGCTCTCGCTGCACAGCTGCAAGAC
GCTCAGGGCTCTGCCGGATGCGCTGGGACAGCTGATGACGCTCCGCGCGC
TGTCGCTGAGCTGGCTCTGGGTGCTAACGGCCCTGCCCGAGACGCTGGGC
GACCTCGCCGCGCTGACCCACCTCGACATCTCCCACTGCAGAGCGCTGGT
CACCCTGCCGCAGTCGCTCGGCGCGCTGCGCGCGCTGACGTCGCTTTCCG
TGCGCACGTGCCACGCCCTCGCCGCGCTGCCGGACTCTCTCGGCGCGCTC
CCGTCGCTCACGGCGCTCGCGCTCGAGGAGCACGGAGCGCTGACGCGCCT
GCCGGAGACCCTGGGCCAGCTGGCTGCGCTCAGGACCCTGTCGCTGAGCT
ACTGCTGCGCGCTCGCGCGCGTGCCGGAGTCGCTGCCACAGCTAGGCAGC
CTCACGGCACTCAACCTGTTCTGCTGCTGGGCGCTGCCGTGCCTGCCCGC
GGCGCTCGGGCGGCTGCGCGCGCTCGCCGCGCTGCGCCTGCGCCGCTGCA
CGGCGCTGCGCGCGCTGCCCGCCTCGTTTGGCCAGCTGCGCGCGCTGACG
ACGCTCGACCTGAGCGAGTGCGGCAGGCTCGCGGGGCTGCCGCGCGGCGT
CTCGTTCACGGACTTCCCTGCGCTGCGGCAGCTGGAGGTGGCGGGGTGCC
AGCAGCCGGTGTCGGCGGCGGCGGACGCGTGGAACCGCGCGCGGTGGCGC
CGCGGCGGCAGCAGCGCTCAGTGCGCGGCGCCGCTGCCGCCGCGCGCTGC
CGCTGCTGCTGCTGCGGGAGTAGATATGGACGTCGCCGCCGCCTAG
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protein sequence of jgi.p|Trimin1|174646

>Trimin1|174646|e_gw1.116.41.1 ID=Trimin1|174646|e_gw1.116.41.1|Name=jgi.p|Trimin1|174646|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=382bp
MHRDVKPVVALLVLGPHGSPTAAAAFASKHVVHVKLRGRFKVDPLRVAWQ
ESSFHKTVCVLTLEAYDGAALAHLPRSLQQLHIGCCDPVRVHHTLHALSE
PGAAPALTSLSLHSCKTLRALPDALGQLMTLRALSLSWLWVLTALPETLG
DLAALTHLDISHCRALVTLPQSLGALRALTSLSVRTCHALAALPDSLGAL
PSLTALALEEHGALTRLPETLGQLAALRTLSLSYCCALARVPESLPQLGS
LTALNLFCCWALPCLPAALGRLRALAALRLRRCTALRALPASFGQLRALT
TLDLSECGRLAGLPRGVSFTDFPALRQLEVAGCQQPVSAAADAWNRARWR
RGGSSAQCAAPLPPRAAAAAAAGVDMDVAAA*
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mRNA from alignment at Contig_116:324624..325769+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11297 ID=mRNA_11297|Name=jgi.p|Trimin1|174646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1146bp|location=Sequence derived from alignment at Contig_116:324624..325769+ (Tribonema minus UTEX_B_3156 )
ATGCACAGGGACGTGAAGCCTGTTGTGGCGCTGCTCGTTCTTGGGCCGCA
CGGTTCTCCGACAGCAGCTGCCGCGTTCGCCAGCAAGCATGTCGTCCATG
TCAAGCTCCGCGGACGGTTCAAAGTAGACCCACTGCGCGTTGCATGGCAA
GAGTCTAGCTTCCACAAGACAGTCTGCGTGCTCACCTTAGAGGCGTATGA
TGGGGCAGCGCTTGCGCACCTGCCACGCAGTCTGCAGCAGCTCCACATCG
GATGCTGCGATCCCGTGCGCGTGCATCACACGCTTCACGCCTTGAGCGAG
CCAGGCGCTGCCCCAGCGCTGACGTCGCTCTCGCTGCACAGCTGCAAGAC
GCTCAGGGCTCTGCCGGATGCGCTGGGACAGCTGATGACGCTCCGCGCGC
TGTCGCTGAGCTGGCTCTGGGTGCTAACGGCCCTGCCCGAGACGCTGGGC
GACCTCGCCGCGCTGACCCACCTCGACATCTCCCACTGCAGAGCGCTGGT
CACCCTGCCGCAGTCGCTCGGCGCGCTGCGCGCGCTGACGTCGCTTTCCG
TGCGCACGTGCCACGCCCTCGCCGCGCTGCCGGACTCTCTCGGCGCGCTC
CCGTCGCTCACGGCGCTCGCGCTCGAGGAGCACGGAGCGCTGACGCGCCT
GCCGGAGACCCTGGGCCAGCTGGCTGCGCTCAGGACCCTGTCGCTGAGCT
ACTGCTGCGCGCTCGCGCGCGTGCCGGAGTCGCTGCCACAGCTAGGCAGC
CTCACGGCACTCAACCTGTTCTGCTGCTGGGCGCTGCCGTGCCTGCCCGC
GGCGCTCGGGCGGCTGCGCGCGCTCGCCGCGCTGCGCCTGCGCCGCTGCA
CGGCGCTGCGCGCGCTGCCCGCCTCGTTTGGCCAGCTGCGCGCGCTGACG
ACGCTCGACCTGAGCGAGTGCGGCAGGCTCGCGGGGCTGCCGCGCGGCGT
CTCGTTCACGGACTTCCCTGCGCTGCGGCAGCTGGAGGTGGCGGGGTGCC
AGCAGCCGGTGTCGGCGGCGGCGGACGCGTGGAACCGCGCGCGGTGGCGC
CGCGGCGGCAGCAGCGCTCAGTGCGCGGCGCCGCTGCCGCCGCGCGCTGC
CGCTGCTGCTGCTGCGGGAGTAGATATGGACGTCGCCGCCGCCTAG
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Coding sequence (CDS) from alignment at Contig_116:324624..325769+

>mRNA_11297 ID=mRNA_11297|Name=jgi.p|Trimin1|174646|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1146bp|location=Sequence derived from alignment at Contig_116:324624..325769+ (Tribonema minus UTEX_B_3156 )
ATGCACAGGGACGTGAAGCCTGTTGTGGCGCTGCTCGTTCTTGGGCCGCA
CGGTTCTCCGACAGCAGCTGCCGCGTTCGCCAGCAAGCATGTCGTCCATG
TCAAGCTCCGCGGACGGTTCAAAGTAGACCCACTGCGCGTTGCATGGCAA
GAGTCTAGCTTCCACAAGACAGTCTGCGTGCTCACCTTAGAGGCGTATGA
TGGGGCAGCGCTTGCGCACCTGCCACGCAGTCTGCAGCAGCTCCACATCG
GATGCTGCGATCCCGTGCGCGTGCATCACACGCTTCACGCCTTGAGCGAG
CCAGGCGCTGCCCCAGCGCTGACGTCGCTCTCGCTGCACAGCTGCAAGAC
GCTCAGGGCTCTGCCGGATGCGCTGGGACAGCTGATGACGCTCCGCGCGC
TGTCGCTGAGCTGGCTCTGGGTGCTAACGGCCCTGCCCGAGACGCTGGGC
GACCTCGCCGCGCTGACCCACCTCGACATCTCCCACTGCAGAGCGCTGGT
CACCCTGCCGCAGTCGCTCGGCGCGCTGCGCGCGCTGACGTCGCTTTCCG
TGCGCACGTGCCACGCCCTCGCCGCGCTGCCGGACTCTCTCGGCGCGCTC
CCGTCGCTCACGGCGCTCGCGCTCGAGGAGCACGGAGCGCTGACGCGCCT
GCCGGAGACCCTGGGCCAGCTGGCTGCGCTCAGGACCCTGTCGCTGAGCT
ACTGCTGCGCGCTCGCGCGCGTGCCGGAGTCGCTGCCACAGCTAGGCAGC
CTCACGGCACTCAACCTGTTCTGCTGCTGGGCGCTGCCGTGCCTGCCCGC
GGCGCTCGGGCGGCTGCGCGCGCTCGCCGCGCTGCGCCTGCGCCGCTGCA
CGGCGCTGCGCGCGCTGCCCGCCTCGTTTGGCCAGCTGCGCGCGCTGACG
ACGCTCGACCTGAGCGAGTGCGGCAGGCTCGCGGGGCTGCCGCGCGGCGT
CTCGTTCACGGACTTCCCTGCGCTGCGGCAGCTGGAGGTGGCGGGGTGCC
AGCAGCCGGTGTCGGCGGCGGCGGACGCGTGGAACCGCGCGCGGTGGCGC
CGCGGCGGCAGCAGCGCTCAGTGCGCGGCGCCGCTGCCGCCGCGCGCTGC
CGCTGCTGCTGCTGCGGGAGTAGATATGGACGTCGCCGCCGCCTAG
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