mRNA_11251 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129470
Unique NamemRNA_11251
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|129470 vs. uniprot
Match: A0A835ZE41_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE41_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.790e-29
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 RASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 156
            RASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI
Sbjct:    1 RASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 52
[Close]
BLAST of jgi.p|Trimin1|129470 vs. uniprot
Match: A0A836CH06_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH06_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.840e-17
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    4 ASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 156
            +  +TL  +ERYY+ PLA+A+R LGLSATMLKKVCRS G++ WP+RQLASI
Sbjct:   25 SKDITLPQVERYYNQPLAQAARGLGLSATMLKKVCRSLGVRNWPYRQLASI 75
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BLAST of jgi.p|Trimin1|129470 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.280e-13
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 ASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 156
            A  +TL  L+ YY+ PLAE ++ELGLS T+LKK+CR FGI+RWPHRQ+ S+
Sbjct:    8 ADQITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSL 58
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BLAST of jgi.p|Trimin1|129470 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI)

HSP 1 Score: 70.9 bits (172), Expect = 4.170e-13
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   13 LTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 156
            +TL  L+ YY+ PLAE ++ELGLS T+LKK+CR FGI+RWPHRQ+ SI
Sbjct:   14 ITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSI 61
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BLAST of jgi.p|Trimin1|129470 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.480e-13
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 ASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 156
            A ++TL  L+ +Y+ PLAE ++ELGLS T+LKK+CR +GI+RWPHRQ+ SI
Sbjct:   11 ADNITLELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSI 61
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BLAST of jgi.p|Trimin1|129470 vs. uniprot
Match: D8R0I0_SELML (RWP-RK domain-containing protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R0I0_SELML)

HSP 1 Score: 63.5 bits (153), Expect = 3.720e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 RASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 156
            R   ++L DL RY++ P+ +AS+EL +  T+LKK CR FGI RWPHR+L S+
Sbjct:   12 RMMDISLEDLSRYFTMPITQASKELKVGLTVLKKRCREFGIPRWPHRKLKSL 63
[Close]
BLAST of jgi.p|Trimin1|129470 vs. uniprot
Match: D8RII7_SELML (RWP-RK domain-containing protein (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RII7_SELML)

HSP 1 Score: 62.8 bits (151), Expect = 5.880e-12
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 RASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 156
            R   ++L DL RY++ P+ +AS EL +  T+LKK CR FGI RWPHR+L S+
Sbjct:    2 RMMDISLEDLSRYFTMPITQASNELKVGLTVLKKWCREFGIPRWPHRKLKSL 53
[Close]
BLAST of jgi.p|Trimin1|129470 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.120e-12
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    4 ASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 156
            A  L ++ LE +Y  PL  A+REL +S TMLKK+CR +GIKRWPHRQ++S+
Sbjct:   10 AKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSL 60
[Close]
BLAST of jgi.p|Trimin1|129470 vs. uniprot
Match: A0A061G426_THECC (RWP-RK domain-containing protein n=4 Tax=Byttnerioideae TaxID=214909 RepID=A0A061G426_THECC)

HSP 1 Score: 67.0 bits (162), Expect = 1.050e-11
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 156
            R  +LTL D+E+Y+  P+ EA+R L LS T+LKK+CR +G+ RWPHR++ S+
Sbjct:  268 RTRNLTLKDIEKYFHLPIEEAARRLDLSVTVLKKICRKYGVLRWPHRKIQSM 319
[Close]
BLAST of jgi.p|Trimin1|129470 vs. uniprot
Match: D8LJT6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT6_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-11
Identity = 25/48 (52.08%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   13 LTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLASI 156
            +TL DLERY+ +P+ E S+ +G+S T++K++CR +GIKRWP+RQ+ S+
Sbjct:  106 VTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSV 153
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129470 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZE41_9STRA2.790e-29100.00RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A836CH06_9STRA2.840e-1766.67RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A835YTG3_9STRA2.280e-1360.78Putative NIN-like transcription factor n=1 Tax=Tri... [more]
H6WBB7_VAULI4.170e-1364.58Putative NIN-like transcription factor n=1 Tax=Vau... [more]
A0A835Z1M5_9STRA8.480e-1358.82Putative NIN-like transcription factor n=1 Tax=Tri... [more]
D8R0I0_SELML3.720e-1251.92RWP-RK domain-containing protein (Fragment) n=3 Ta... [more]
D8RII7_SELML5.880e-1251.92RWP-RK domain-containing protein (Fragment) n=5 Ta... [more]
A0A835Z7T4_9STRA6.120e-1256.86RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A061G426_THECC1.050e-1151.92RWP-RK domain-containing protein n=4 Tax=Byttnerio... [more]
D8LJT6_ECTSI1.170e-1152.08Putative NIN-like transcription factor n=1 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_116contigContig_116:46013..46168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129470|gw1.116.1.1
DescriptionRWP-RK domain
COG categoryK
Max annot lvl35493|Streptophyta
EggNOG OGs2AYC7@1|root,2S030@2759|Eukaryota,37UUJ@33090|Viridiplantae,3GHQ8@35493|Streptophyta
Evalue1.71e-12
Seed ortholog3641.EOY24326
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId129792
TrackFilteredModels1
ProteinId129470
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129470gene_11251Tribonema minus UTEX_B_3156 geneContig_116 46013..46168 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11251_1exon_11251_1Tribonema minus UTEX_B_3156 exonContig_116 46013..46168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11251CDS_11251Tribonema minus UTEX_B_3156 CDSContig_116 46013..46168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129470Trimin1|129470|gw1.116.1.1Tribonema minus UTEX_B_3156 polypeptideContig_116 46013..46168 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11251 ID=mRNA_11251|Name=jgi.p|Trimin1|129470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=156bp|location=Sequence derived from alignment at Contig_116:46013..46168- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCGCGAGCTCCCTCACGCTGGCGGACTTGGAGCGCTACTACTCGCACCC
GCTCGCGGAGGCGTCGCGCGAGCTCGGCCTCAGCGCCACCATGCTCAAGA
AGGTGTGCCGCAGCTTCGGCATCAAGCGCTGGCCGCACCGCCAGCTGGCG
AGCATC
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protein sequence of jgi.p|Trimin1|129470

>Trimin1|129470|gw1.116.1.1 ID=Trimin1|129470|gw1.116.1.1|Name=jgi.p|Trimin1|129470|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=52bp
RASSLTLADLERYYSHPLAEASRELGLSATMLKKVCRSFGIKRWPHRQLA
SI
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mRNA from alignment at Contig_116:46013..46168-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11251 ID=mRNA_11251|Name=jgi.p|Trimin1|129470|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=156bp|location=Sequence derived from alignment at Contig_116:46013..46168- (Tribonema minus UTEX_B_3156 )
CGCGCGAGCTCCCTCACGCTGGCGGACTTGGAGCGCTACTACTCGCACCC
GCTCGCGGAGGCGTCGCGCGAGCTCGGCCTCAGCGCCACCATGCTCAAGA
AGGTGTGCCGCAGCTTCGGCATCAAGCGCTGGCCGCACCGCCAGCTGGCG
AGCATC
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Coding sequence (CDS) from alignment at Contig_116:46013..46168-

>mRNA_11251 ID=mRNA_11251|Name=jgi.p|Trimin1|129470|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=156bp|location=Sequence derived from alignment at Contig_116:46013..46168- (Tribonema minus UTEX_B_3156 )
CGCGCGAGCTCCCTCACGCTGGCGGACTTGGAGCGCTACTACTCGCACCC
GCTCGCGGAGGCGTCGCGCGAGCTCGGCCTCAGCGCCACCATGCTCAAGA
AGGTGTGCCGCAGCTTCGGCATCAAGCGCTGGCCGCACCGCCAGCTGGCG
AGCATC
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