mRNA_11204 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351053
Unique Name	mRNA_11204
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351053 vs. uniprot
Match: A0A835ZGC3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC3_9STRA)

HSP 1 Score: 758 bits (1957), Expect = 1.070e-259
Identity = 666/767 (86.83%), Postives = 667/767 (86.96%), Query Frame = 2

Query:    2 SQHTTTQRSTTTMTSNTVESLGFTITAGVEWALKMLYAQKASAETLKIFQTVPIAYAASAVLHSGRTLAQKQRNEYAYRSYTNVAMPGFLKWLSEAANDNPPSWITREIM--LQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASLFPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTA-----------------------------VLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANAVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXSHGXXXSIARGGGMRG--------GXXXXXXXXXGAAIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAFLGVGXXXXXXXXXXXXXXXXXXDGAGAXXXXXXXXXXXXXXXXXXXXXX-----------VGGAGALAANLGSEFGVDSIGGTFGVDGSXXGSSTRSGG 2152
            SQHTTTQRSTTTMTSNTVESLGFTITAGVEWALKMLYAQKASAETLKIFQTVPIAYAASAVLHSGRTLAQKQRNEYAYRSYTNVAMPGFLKWLSEAANDNPPSWITREIM  LQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFAS+FPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTA                             VLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHAN VARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDS              XXXXXXX         XXXXXX XXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXX HGXX SIARGGGMRG         XXXXXXXXX AAIP XXXXXXXXXXXXXXXXXXXX    XXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAFLGV  XXXXXXXXXXXXXXXXXDGAGA XXXXXXXXXXXXXXXXXXXXX           VGGAGALAANLGSEFGVD IG        XXGSSTRSGG
Sbjct:  151 SQHTTTQRSTTTMTSNTVESLGFTITAGVEWALKMLYAQKASAETLKIFQTVPIAYAASAVLHSGRTLAQKQRNEYAYRSYTNVAMPGFLKWLSEAANDNPPSWITREIMQQLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASVFPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTAGDGTELCGHYGADGDGSLMAGTGAAAAAAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANGVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGHGAARNRHXXXXXXXAGVSACGGGXXXXXXLXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXHGXXGSIARGGGMRGRXXXXXXXXXXXXXXXXXXAAIPGXXXXXXXXXXXXXXXXXXXXVHSGXXXXXXXXLATFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAFLGVSFXXXXXXXXXXXXXXXXXDGAGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGIGXXXXXXXXXXGSSTRSGG 917

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BLAST of jgi.p|Trimin1|351053 vs. uniprot
Match: A0A835YUM3_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUM3_9STRA)

HSP 1 Score: 682 bits (1761), Expect = 7.410e-230
Identity = 652/777 (83.91%), Postives = 657/777 (84.56%), Query Frame = 2

Query:    2 SQHTTTQRSTTTMTSNTVESLGFTITAGVEWALKMLYAQKASAETLKIFQTVPIAYAASAVLHSGRTLAQKQRNEYAYRSYTNVAMPGFLKWLSEAANDNPPSWITREIMLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASLFPSGVPSGQQEGDILETLRCAL------------------------WAKD-KGEPE------------------------GPAAAGQTAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANAVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXSHGXXXSIARGGGMRGGXXXXXXXXXGAAIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAFLGVGXXXXXXXXXXXXXXXXXXDGAGAXXXXXXXXXXXXXXXXXXXXXX-----------VGGAGALAANLGSEFGVDSIGGTFGVDGSXXGSSTRSGG 2152
            SQHTTTQRSTTTMTSNTVESLGFTITAGVEWALKMLYAQKASAETLKIFQTVPIAYAASAVLHSGRTLAQKQRNEYAYRSYTNVAMPGFLKWLSEAANDNPPSWITREIMLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLP      P       ++  +  + RCA+                        W  D K  P                         G  AA   AVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQL PSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANAVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDS             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXSHGXXXSIARGGGMRGGXXXXXXXXXGAAIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXX SPAFLGV XXXXXXXXXXXXXXXXXXDGAGAXXXXXXXXXXXXXXXXXXXXXX           VGGAGALAANLGSEFGVD I         XXGSSTRSGG
Sbjct:  170 SQHTTTQRSTTTMTSNTVESLGFTITAGVEWALKMLYAQKASAETLKIFQTVPIAYAASAVLHSGRTLAQKQRNEYAYRSYTNVAMPGFLKWLSEAANDNPPSWITREIMLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPSLQVCSPLVYLRDSRK--VTSSKRCAVHSGPRTRASQRALQQQAKQQLSTVWFGDCKQRPHRMRSCDGTELCGHYGADGDGSLMAGTGAAAAAAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLAPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANAVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGHAAARNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXSHGXXXSIARGGGMRGGXXXXXXXXXGAAIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATFGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPAFLGVXXXXXXXXXXXXXXXXXXXDGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGIXXXXXXXXXXXGSSTRSGG 944

[Close]

BLAST of jgi.p|Trimin1|351053 vs. uniprot
Match: A0A835Z7Q8_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q8_9STRA)

HSP 1 Score: 645 bits (1664), Expect = 5.440e-219
Identity = 626/685 (91.39%), Postives = 627/685 (91.53%), Query Frame = 2

Query:  212 KQRNEYAYRSYTNVAMPGFLKWLSEAANDNPPSWITREIM--LQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASLFPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANAVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXSHGXXXSIARGGGMRGGXXXXXXXXXGAAIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAFLGVGXXXXXXXXXXXXXXXXXXDGAGAXXXXXXXXXXXXXXXXXXXXXX-----------VGGAGALAANLGSEFGVDSIGGTFGVDGSXXGSSTRSGGTGLAAAXXXXXXSIPSALAMLAVAA 2227
            KQRNEYAYRSYTNVAMPGFL WLSEAANDNPPSWITREIM  LQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFAS+FPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHAN VARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDS              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXX H XXXSIARGGGMRG XXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAFLGV XXXXXXXXXXXXXXXXXXDGAGA XXXXXXXXXXXXXXXXXXXXX           VGGAGALAANLGSEFGVD IGGTFGV   XX              XXXXXX IPSALAMLAVAA
Sbjct:   76 KQRNEYAYRSYTNVAMPGFLMWLSEAANDNPPSWITREIMQQLQTTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFASVFPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTAVLNTNAATTAGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVIKRCGLTSRRRLKQQQQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANGVARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKDDSSDGDSSSCSSGHSAARNRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALNIGGASALMDSFGGAQRSGDGANAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXHXXXXSIARGGGMRGXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAFLGVXXXXXXXXXXXXXXXXXXXDGAGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGGAGALAANLGSEFGVDGIGGTFGVXXXXXXXXXXXXXXXXXXXXXXXXXXIPSALAMLAVAA 758

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351053 vs. uniprot

BLAST of jgi.p|Trimin1|351053 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835ZGC3_9STRA	1.070e-259	86.83	Uncharacterized protein n=2 Tax=Tribonema minus Ta...	[more]
A0A835YUM3_9STRA	7.410e-230	83.91	Uncharacterized protein n=4 Tax=Tribonema minus Ta...	[more]
A0A835Z7Q8_9STRA	5.440e-219	91.39	Uncharacterized protein n=2 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_79	contig	Contig_79:396571..399861 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351053\|estExt_Genemark1.C_Ctg_790042
Hectar predicted targeting category	other localisation
TranscriptId	351375
Track	FilteredModels1
ProteinId	351053

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351053	gene_11204	Tribonema minus UTEX_B_3156	gene	Contig_79 396571..399861 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351053	Trimin1\|351053\|estExt_Genemark1.C_Ctg_790042	Tribonema minus UTEX_B_3156	polypeptide	Contig_79 396608..399579 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_11204_1	exon_11204_1	Tribonema minus UTEX_B_3156	exon	Contig_79 396571..396920 +
exon_11204_2	exon_11204_2	Tribonema minus UTEX_B_3156	exon	Contig_79 397014..397149 +
exon_11204_3	exon_11204_3	Tribonema minus UTEX_B_3156	exon	Contig_79 397454..397578 +
exon_11204_4	exon_11204_4	Tribonema minus UTEX_B_3156	exon	Contig_79 397918..399458 +
exon_11204_5	exon_11204_5	Tribonema minus UTEX_B_3156	exon	Contig_79 399502..399861 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_11204	UTR5_11204	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_79 396571..396607 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_11204	CDS_11204	Tribonema minus UTEX_B_3156	CDS	Contig_79 396608..396920 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_11204	UTR3_11204	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_79 399580..399861 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_79:396571..399861+
coding sequence from alignment at Contig_79:396571..399861+

spliced messenger RNA

>mRNA_11204 ID=mRNA_11204|Name=jgi.p|Trimin1|351053|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2512bp|location=Sequence derived from alignment at Contig_79:396571..399861+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCACAACACACGACGACGCAGCGATCCACTACAACGATGACCTCCAACA
CCGTGGAATCGCTGGGCTTCACCATCACGGCCGGTGTGGAGTGGGCGTTG
AAGATGCTATACGCCCAAAAGGCGTCTGCAGAGACGCTAAAAATATTTCA
GACAGTGCCGATTGCATATGCGGCGTCGGCCGTCTTGCATAGCGGTAGAA
CGCTTGCGCAGAAGCAGCGCAACGAGTACGCCTATCGGTCCTACACGAAC
GTAGCTATGCCTGGATTTCTGAAGTGGCTCAGCGAGGCTGCGAACGACAA
CCCGCCGAGTTGGATTACGAGGGAAATCATGCTGCAGACGACGTTTAGCG
TGGGCAAGGCTAAAAAAGCCGACGGCAGCAAGGCGCAGGCTCCGAAGACG
TTTTTGCCCGACAAAGACTCGCTCTGGAGCAAGTGGGCGGAGGCATGCAA
GAACATACAAAATGTCTATCTGCCCCTCTTTGCAAGTCTGTTCCCCTCTG
GTGTACCTTCGGGACAGCAGGAAGGTGACATCCTCGAAACGCTGCGCTGT
GCACTCTGGGCCAAGGACAAGGGCGAGCCAGAGGGCCCTGCAGCAGCAGG
CCAAACAGCAGTGCTCAACACCAATGCAGCCACTACAGCAGGCACCAGCG
CAGTGACGCCTAGCGTGGCCAAGCCTATGCCGGAGAACTGGCTGCCGCGA
TACATGCTTCTCTTCATTCTTTATGGACCCCTGAGCGACCGGCCCTTGAC
TGAGTTTCAGCTCGTACCATCAAGTGGCCCAACGTGCGCGGCAGCTGCGG
GTGACACCACTGGCGGCAATGATTCCGACGGCGCCTCTATCATCAGCGGC
GGCACCAATGACGCGTCCAGCAGCCTATCCTCAGCGCCTGTCATCAAACG
CTGCGGCCTCACCAGTCGCCGCAGACTGAAGCAGCAGCAGCAGAAGCAGC
TGAGATCGGAGCGCGGGCTGCCGAGCTTGTCAGATGAGGAGAGGGCCAAC
AAGCGGCAGGTCGTGGCAGCGTTGAAGGCATCCACAAAGGAGGCGCGCGC
ACTTCGCAACGCAGTGAAAACACACGCAAATGCTGTTGCTAGAAAGCAGC
AGCTGGACGAGTTGAAGCTGCGGGTTGAGTTGTTAGCAGGCGACCCAGTG
CGTGAAGCGGAAGCCAGGGCAACCTTGCTAGCATTCCTGGATGGCGGAAG
CAGCAACGGCCATAGCTTTGACAGGGCCAACAAGGACGACAGCAGCGATG
GCGACAGCAGCAGCTGCAGCAGCGGCCACGCCGCCGCCCGAAACCGTCAC
AGCAGTGGCAGCGGCAGCAGCGCGGGCGTCAGCGCTTGCGGCGGTGGCAG
GGGTGGTTCCGGCGACCTGCTTGGCAGCAGCGCCGGTGGCGGCGACAACG
GCGGCGGCAGCAGCGCCCTCAATATCGGCGGTGCTTCTGCACTCATGGAC
AGTTTTGGCGGCGCGCAGCGTAGCGGCGACGGCGCCAATGCTGCTGCTCC
TGCGGACGGTTTTGGCGGTGGCGGCGCCGGAAACGGTTTTGGCGGTGGCG
GCGCCGGAAACGGCTTTGGCGGTGATGGCAGCCACGGCGGCGGCGGCAGC
ATTGCGCGCGGCGGCGGTATGCGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGCTGGCGCTGCTATTCCTGGAGGCGGGTTTGGCAGCAGCAGCAGCC
GCGGCGGCGGCGGCAGCATTGCGCATGGCAGCGGTGTGCACAGCGGCGCC
GGCGCCGGCAGTGGCGCTGGCCTTGCTACGTTTGGAGACGGTTCTGGCGG
CGGCAGCAGCGGCGACGGCAACGGCGCGCTTGGCTACGGCGTGCGCAGCG
GCGGCGGCAGCGGCGGCGGCAGCGGCAGTCCTGCTTTTCTTGGAGTCGGC
TTTGGCGGTGACAGCAGCGGCGGCGGCAACGGCGCCCTTGGCAACGGCGT
ACGCGACGGCGCCGGCGCGCTTGGCTACGGCGTACGCGACGGCGCCGGCG
CGCTTGGCTACGGCGTACGCGACGGCGCCGGCGGCGTCGGCGGCGCCGGT
GCACTGGCGGCTAATCTTGGAAGCGAGTTTGGCGTTGACAGCATTGGAGG
CACATTTGGCGTTGACGGCAGCGGCGGCGGCAGCAGCACGCGCAGCGGCG
GTACGGGTCTGGCGGCGGCGGCGGCAGCGGCAGCGGCTTCAATCCCTTCA
GCGCTGGCGATGCTGGCGGTCGCGGCTTAGATCGTAGTGCAGTTCATGCA
GTCCTCGCTCGAATGCGTGGCAATGCTCAGGCCCCTAGTGCCGCTACAGT
TTCCCGCGGCCATGACAACTCGAATGCACCTGCTTCGGTTTTGACCAATA
CTGCGAAAGTATGATCAATTTATGGCTGCGGCTGCCGCAGCGTCATGCAG
TGCACCTGTGTCAATCTGACGTGAGTCACTGCATAGCTCTGGCAGTCAGC
CAGATTTTTAACTTGCCTTTGACTGTCACATCGCCTAGTGAATAATAGAA
ATGCCATACAAA

protein sequence of jgi.p|Trimin1|351053

>Trimin1|351053|estExt_Genemark1.C_Ctg_790042 ID=Trimin1|351053|estExt_Genemark1.C_Ctg_790042|Name=jgi.p|Trimin1|351053|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=731bp
MTSNTVESLGFTITAGVEWALKMLYAQKASAETLKIFQTVPIAYAASAVL
HSGRTLAQKQRNEYAYRSYTNVAMPGFLKWLSEAANDNPPSWITREIMLQ
TTFSVGKAKKADGSKAQAPKTFLPDKDSLWSKWAEACKNIQNVYLPLFAS
LFPSGVPSGQQEGDILETLRCALWAKDKGEPEGPAAAGQTAVLNTNAATT
AGTSAVTPSVAKPMPENWLPRYMLLFILYGPLSDRPLTEFQLVPSSGPTC
AAAAGDTTGGNDSDGASIISGGTNDASSSLSSAPVIKRCGLTSRRRLKQQ
QQKQLRSERGLPSLSDEERANKRQVVAALKASTKEARALRNAVKTHANAV
ARKQQLDELKLRVELLAGDPVREAEARATLLAFLDGGSSNGHSFDRANKD
DSSDGDSSSCSSGHAAARNRHSSGSGSSAGVSACGGGRGGSGDLLGSSAG
GGDNGGGSSALNIGGASALMDSFGGAQRSGDGANAAAPADGFGGGGAGNG
FGGGGAGNGFGGDGSHGGGGSIARGGGMRGGGGGGGGGGAGAAIPGGGFG
SSSSRGGGGSIAHGSGVHSGAGAGSGAGLATFGDGSGGGSSGDGNGALGY
GVRSGGGSGGGSGSPAFLGVGFGGDSSGGGNGALGNGVRDGAGALGYGVR
DGAGALGYGVRDGAGGVGGAGALAANLGSEFGVDSIGGTFGVDGSGGGSS
TRSGGTGLAAAAAAAAASIPSALAMLAVAA*

mRNA from alignment at Contig_79:396571..399861+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11204 ID=mRNA_11204|Name=jgi.p|Trimin1|351053|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3291bp|location=Sequence derived from alignment at Contig_79:396571..399861+ (Tribonema minus UTEX_B_3156 )
GTCACAACACACGACGACGCAGCGATCCACTACAACGATGACCTCCAACA
CCGTGGAATCGCTGGGCTTCACCATCACGGCCGGTGTGGAGTGGGCGTTG
AAGATGCTATACGCCCAAAAGGCGTCTGCAGAGACGCTAAAAATATTTCA
GACAGTGCCGATTGCATATGCGGCGTCGGCCGTCTTGCATAGCGGTAGAA
CGCTTGCGCAGAAGCAGCGCAACGAGTACGCCTATCGGTCCTACACGAAC
GTAGCTATGCCTGGATTTCTGAAGTGGCTCAGCGAGGCTGCGAACGACAA
CCCGCCGAGTTGGATTACGAGGGAAATCATGCTGCAGACGACGTTTAGCG
GTGAGTGAGAGCGTCAGAAACTCGCTGCCAGAGTGATGTGCTGCTCAATT
TGTTTGATTGCACTCTGATGGGCATGCCCGCTTGCTGTCACAGTGGGCAA
GGCTAAAAAAGCCGACGGCAGCAAGGCGCAGGCTCCGAAGACGTTTTTGC
CCGACAAAGACTCGCTCTGGAGCAAGTGGGCGGAGGCATGCAAGAACATA
CAAAATGTCTATCTGCCCCTCTTTGCAAGGTGAGCATGCCTTTCTTGAAA
GCAGACCAGCTGGTCAAGTTGTCGCATGCTTTCATCTGCGATCATCTGTC
CTGATGTATGTGTACATGTTATTGCACTATGGTCTGTTGCTATATTGAAC
ATGCATGCCGTAGAATGCTTCTGCACAGCGTTAATGCGGAGGATTCAAGA
CAGCGCGGTGTCTTCTTCAGTGTGTAGGATGTAGAAATGCGGGCATAATA
ACATAAAGAGCAAGTCAAAGCGATTGGAAGTATATGCCATTGACTGCAAG
CCGGACGCTGTGGTTGCTGCCTTTCTGTTGCAGTCTGTTCCCCTCTGGTG
TACCTTCGGGACAGCAGGAAGGTGACATCCTCGAAACGCTGCGCTGTGCA
CTCTGGGCCAAGGACAAGGGCGAGCCAGAGGGCCCTGCAGCAGCAGGCCA
AACAGCAGGTAAATAGCAGCTGCAGCATTGTGCACGAAGTGTGCACGACA
ATGAGCTCAATGTGATGTGGTACCTCGTCTGCATGCAGCTGAGCACAGTG
TGGTTTGGTGACTGCAAGCAGCGCCCGCATCGCATGCGCAGCTGTACGTC
ATGCTGGTGCACAGGAGGACCTCTTGACATCACAATGCCCCATGCTTTCA
GCAGCCTCAGACCATATGCTGCTATGCCTTGCTGCTTCTTGTCATCATTG
TCGCCACCAGGTGATGGTACGGAATTGTGCGGCCATTATGGCGCCGATGG
TGACGGGTCACTGATGGCCGGCACTGGTGCTGCTGCTGCTGCGGCAGTGC
TCAACACCAATGCAGCCACTACAGCAGGCACCAGCGCAGTGACGCCTAGC
GTGGCCAAGCCTATGCCGGAGAACTGGCTGCCGCGATACATGCTTCTCTT
CATTCTTTATGGACCCCTGAGCGACCGGCCCTTGACTGAGTTTCAGCTCG
TACCATCAAGTGGCCCAACGTGCGCGGCAGCTGCGGGTGACACCACTGGC
GGCAATGATTCCGACGGCGCCTCTATCATCAGCGGCGGCACCAATGACGC
GTCCAGCAGCCTATCCTCAGCGCCTGTCATCAAACGCTGCGGCCTCACCA
GTCGCCGCAGACTGAAGCAGCAGCAGCAGAAGCAGCTGAGATCGGAGCGC
GGGCTGCCGAGCTTGTCAGATGAGGAGAGGGCCAACAAGCGGCAGGTCGT
GGCAGCGTTGAAGGCATCCACAAAGGAGGCGCGCGCACTTCGCAACGCAG
TGAAAACACACGCAAATGCTGTTGCTAGAAAGCAGCAGCTGGACGAGTTG
AAGCTGCGGGTTGAGTTGTTAGCAGGCGACCCAGTGCGTGAAGCGGAAGC
CAGGGCAACCTTGCTAGCATTCCTGGATGGCGGAAGCAGCAACGGCCATA
GCTTTGACAGGGCCAACAAGGACGACAGCAGCGATGGCGACAGCAGCAGC
TGCAGCAGCGGCCACGCCGCCGCCCGAAACCGTCACAGCAGTGGCAGCGG
CAGCAGCGCGGGCGTCAGCGCTTGCGGCGGTGGCAGGGGTGGTTCCGGCG
ACCTGCTTGGCAGCAGCGCCGGTGGCGGCGACAACGGCGGCGGCAGCAGC
GCCCTCAATATCGGCGGTGCTTCTGCACTCATGGACAGTTTTGGCGGCGC
GCAGCGTAGCGGCGACGGCGCCAATGCTGCTGCTCCTGCGGACGGTTTTG
GCGGTGGCGGCGCCGGAAACGGTTTTGGCGGTGGCGGCGCCGGAAACGGC
TTTGGCGGTGATGGCAGCCACGGCGGCGGCGGCAGCATTGCGCGCGGCGG
CGGTATGCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCTGGCGCTG
CTATTCCTGGAGGCGGGTTTGGCAGCAGCAGCAGCCGCGGCGGCGGCGGC
AGCATTGCGCATGGCAGCGGTGTGCACAGCGGCGCCGGCGCCGGCAGTGG
CGCTGGCCTTGCTACGTTTGGAGACGGTTCTGGCGGCGGCAGCAGCGGCG
ACGGCAACGGCGCGCTTGGCTACGGCGTGCGCAGCGGCGGCGGCAGCGGC
GGCGGCAGCGGCAGTCCTGCTTTTCTTGGAGTCGGCTTTGGCGGTGACAG
CAGCGGCGGCGGCAACGGCGCCCTTGGCAACGGCGTACGCGACGGCGCCG
GCGCGCTTGGCTACGGCGTACGCGACGGCGCCGGCGCGCTTGGCTACGGC
GTACGCGACGGCGCCGGCGGCGTCGGCGGCGCCGGTGCACTGGCGGCTAA
TCTTGGAAGCGAGTTTGGCGTTGACAGCATTGGAGGCACATTTGGCGTTG
ACGGCAGCGGCGGCGGCAGCAGCACGCGCAGCGGCGGTGTGCGCGGTGAT
ATTGGCAACGGTGGTGCTGCTGCTCTTGGAGACGGGTCTGGCGGCGGCGG
CGGCAGCGGCAGCGGCTTCAATCCCTTCAGCGCTGGCGATGCTGGCGGTC
GCGGCTTAGATCGTAGTGCAGTTCATGCAGTCCTCGCTCGAATGCGTGGC
AATGCTCAGGCCCCTAGTGCCGCTACAGTTTCCCGCGGCCATGACAACTC
GAATGCACCTGCTTCGGTTTTGACCAATACTGCGAAAGTATGATCAATTT
ATGGCTGCGGCTGCCGCAGCGTCATGCAGTGCACCTGTGTCAATCTGACG
TGAGTCACTGCATAGCTCTGGCAGTCAGCCAGATTTTTAACTTGCCTTTG
ACTGTCACATCGCCTAGTGAATAATAGAAATGCCATACAAA

Coding sequence (CDS) from alignment at Contig_79:396571..399861+

>mRNA_11204 ID=mRNA_11204|Name=jgi.p|Trimin1|351053|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2193bp|location=Sequence derived from alignment at Contig_79:396571..399861+ (Tribonema minus UTEX_B_3156 )
ATGACCTCCAACACCGTGGAATCGCTGGGCTTCACCATCACGGCCGGTGT
GGAGTGGGCGTTGAAGATGCTATACGCCCAAAAGGCGTCTGCAGAGACGC
TAAAAATATTTCAGACAGTGCCGATTGCATATGCGGCGTCGGCCGTCTTG
CATAGCGGTAGAACGCTTGCGCAGAAGCAGCGCAACGAGTACGCCTATCG
GTCCTACACGAACGTAGCTATGCCTGGATTTCTGAAGTGGCTCAGCGAGG
CTGCGAACGACAACCCGCCGAGTTGGATTACGAGGGAAATCATGCTGCAG
ACGACGTTTAGCGTGGGCAAGGCTAAAAAAGCCGACGGCAGCAAGGCGCA
GGCTCCGAAGACGTTTTTGCCCGACAAAGACTCGCTCTGGAGCAAGTGGG
CGGAGGCATGCAAGAACATACAAAATGTCTATCTGCCCCTCTTTGCAAGT
CTGTTCCCCTCTGGTGTACCTTCGGGACAGCAGGAAGGTGACATCCTCGA
AACGCTGCGCTGTGCACTCTGGGCCAAGGACAAGGGCGAGCCAGAGGGCC
CTGCAGCAGCAGGCCAAACAGCAGTGCTCAACACCAATGCAGCCACTACA
GCAGGCACCAGCGCAGTGACGCCTAGCGTGGCCAAGCCTATGCCGGAGAA
CTGGCTGCCGCGATACATGCTTCTCTTCATTCTTTATGGACCCCTGAGCG
ACCGGCCCTTGACTGAGTTTCAGCTCGTACCATCAAGTGGCCCAACGTGC
GCGGCAGCTGCGGGTGACACCACTGGCGGCAATGATTCCGACGGCGCCTC
TATCATCAGCGGCGGCACCAATGACGCGTCCAGCAGCCTATCCTCAGCGC
CTGTCATCAAACGCTGCGGCCTCACCAGTCGCCGCAGACTGAAGCAGCAG
CAGCAGAAGCAGCTGAGATCGGAGCGCGGGCTGCCGAGCTTGTCAGATGA
GGAGAGGGCCAACAAGCGGCAGGTCGTGGCAGCGTTGAAGGCATCCACAA
AGGAGGCGCGCGCACTTCGCAACGCAGTGAAAACACACGCAAATGCTGTT
GCTAGAAAGCAGCAGCTGGACGAGTTGAAGCTGCGGGTTGAGTTGTTAGC
AGGCGACCCAGTGCGTGAAGCGGAAGCCAGGGCAACCTTGCTAGCATTCC
TGGATGGCGGAAGCAGCAACGGCCATAGCTTTGACAGGGCCAACAAGGAC
GACAGCAGCGATGGCGACAGCAGCAGCTGCAGCAGCGGCCACGCCGCCGC
CCGAAACCGTCACAGCAGTGGCAGCGGCAGCAGCGCGGGCGTCAGCGCTT
GCGGCGGTGGCAGGGGTGGTTCCGGCGACCTGCTTGGCAGCAGCGCCGGT
GGCGGCGACAACGGCGGCGGCAGCAGCGCCCTCAATATCGGCGGTGCTTC
TGCACTCATGGACAGTTTTGGCGGCGCGCAGCGTAGCGGCGACGGCGCCA
ATGCTGCTGCTCCTGCGGACGGTTTTGGCGGTGGCGGCGCCGGAAACGGT
TTTGGCGGTGGCGGCGCCGGAAACGGCTTTGGCGGTGATGGCAGCCACGG
CGGCGGCGGCAGCATTGCGCGCGGCGGCGGTATGCGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGCGCTGGCGCTGCTATTCCTGGAGGCGGGTTTGGC
AGCAGCAGCAGCCGCGGCGGCGGCGGCAGCATTGCGCATGGCAGCGGTGT
GCACAGCGGCGCCGGCGCCGGCAGTGGCGCTGGCCTTGCTACGTTTGGAG
ACGGTTCTGGCGGCGGCAGCAGCGGCGACGGCAACGGCGCGCTTGGCTAC
GGCGTGCGCAGCGGCGGCGGCAGCGGCGGCGGCAGCGGCAGTCCTGCTTT
TCTTGGAGTCGGCTTTGGCGGTGACAGCAGCGGCGGCGGCAACGGCGCCC
TTGGCAACGGCGTACGCGACGGCGCCGGCGCGCTTGGCTACGGCGTACGC
GACGGCGCCGGCGCGCTTGGCTACGGCGTACGCGACGGCGCCGGCGGCGT
CGGCGGCGCCGGTGCACTGGCGGCTAATCTTGGAAGCGAGTTTGGCGTTG
ACAGCATTGGAGGCACATTTGGCGTTGACGGCAGCGGCGGCGGCAGCAGC
ACGCGCAGCGGCGGTACGGGTCTGGCGGCGGCGGCGGCAGCGGCAGCGGC
TTCAATCCCTTCAGCGCTGGCGATGCTGGCGGTCGCGGCTTAG