mRNA_10982 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351176
Unique NamemRNA_10982
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|351176 vs. uniprot
Match: A0A835YKC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC9_9STRA)

HSP 1 Score: 605 bits (1559), Expect = 3.780e-216
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1 
Query:    1 MSTSVDLPLAVETGNVISSSSRSLLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETLDDEEQPVAVTETKLSVAAXXXXXXXXXXXXXXXXXXXXXSKVIRGSAPAANAAPLREEVTVHVVPTAAANEQYTLQVRRRGASTSTSP 993
            MSTSVDLPLAVETGNVISSSSRSLLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETLDDEEQPVAVTETKLSVAAXXXXXXXXXXXXXXXXXXXXXSKVIRGSAPAANAAPLREEVTVHVVPTAAANEQYTLQVRRRGASTSTSP
Sbjct:    1 MSTSVDLPLAVETGNVISSSSRSLLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETLDDEEQPVAVTETKLSVAAXXXXXXXXXXXXXXXXXXXXXSKVIRGSAPAANAAPLREEVTVHVVPTAAANEQYTLQVRRRGASTSTSP 331
[Close]
BLAST of jgi.p|Trimin1|351176 vs. uniprot
Match: A0A835YNC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC4_9STRA)

HSP 1 Score: 218 bits (556), Expect = 8.060e-65
Identity = 120/232 (51.72%), Postives = 152/232 (65.52%), Query Frame = 1 
Query:   28 AVETGNVISSSSRSLLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKE 723
            AV+ G    S S +++  YS LL + P+ TK +T+A IAGMGD+ CQ+YT +R     A G  +          G  + +A  AA  G   +Q+H DW       R  +FMLL+ ALFAP+AH WY +L + + G T M  A KRMALDQF+F+PVF+G+FFSALMV+EGEAA+IP KL+QDYW TLV NW +WMPAQL NFRLVP  YQV  AN VG FWNA +S Q FK+
Sbjct:   34 AVQPG-AAESRSINIIQSYSRLLETNPIATKALTSAAIAGMGDIGCQIYT-NRGLAAAAAGAGEA---------GSNAGAADGAATWGSTSQQRHLDW------TRCARFMLLSGALFAPAAHAWYGLLGRLLPGQTLM-VATKRMALDQFVFSPVFVGVFFSALMVLEGEAARIPDKLRQDYWTTLVSNWTLWMPAQLANFRLVPLQYQVGAANCVGLFWNAYLSFQSFKK 247
[Close]
BLAST of jgi.p|Trimin1|351176 vs. uniprot
Match: A0A835YTE5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE5_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.350e-52
Identity = 105/236 (44.49%), Postives = 134/236 (56.78%), Query Frame = 1 
Query:  139 IAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFR---------------------------LVPQPYQVLWANGVGFFWNAIMSAQCFKETLDDEEQPVAVTET 765
            ++ +GD+ACQLY AH+ W+        V    P      ++      A A  A+ Q+   WW AVDLKRT  F  LN  +F PSAHYWYQ+LA  V G     +A  + ALDQF+F PVFM +FF A+M+VEG++A I +KL  DY PTLV+NWG+W+PAQLINFR                           L+P PY+V+W N VG FWNA+MSAQ FK     E+ P A T T
Sbjct:    1 MSSLGDLACQLYIAHKEWKASEGRRWSVIASTPTY----STFEGDNEAIAEAARHQEGGRWWHAVDLKRTLTFTALNGIMFVPSAHYWYQILASAVDGMDHTASAFLKTALDQFVFTPVFMAMFFCAMMIVEGQSANIGKKLSHDYLPTLVRNWGVWIPAQLINFRTMGRESLHMLTDTLPSDEAQLFSGTMRLIPLPYEVVWVNAVGLFWNAVMSAQVFKAP---EDAPAAPTST 229
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BLAST of jgi.p|Trimin1|351176 vs. uniprot
Match: A0A6H5JL95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL95_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.630e-51
Identity = 108/237 (45.57%), Postives = 137/237 (57.81%), Query Frame = 1 
Query:   67 SLLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEE----AQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETLDDEEQPVAVTET 765
            S+   Y++LL SRPL TK VT+  IA  GDV+CQL     A  EE    AQ  +D   H P   GG  SV++                    +D  RT +F  + AA+ AP+ H WY  L + + G TA    VKR+ALDQ LFAPVF+ +F S +M+++G AAKI +KL+ DY  T+V NWG W+PAQ+INFR V   YQVL+AN VGFFWN  +S Q  K  L D E P AV  T
Sbjct:   68 SIFSMYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEHSSAQHVDDHEQHEPFGDGGATSVASE-------------------IDWGRTLRFTFVGAAVVAPALHAWYGFLIRRLPG-TAPATVVKRVALDQLLFAPVFLAVFLSTVMLLDGNAAKIDRKLRADYPTTVVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAAVDVT 284
[Close]
BLAST of jgi.p|Trimin1|351176 vs. uniprot
Match: D8LTH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH2_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.690e-50
Identity = 105/232 (45.26%), Postives = 134/232 (57.76%), Query Frame = 1 
Query:   82 YSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEE----AQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETLDDEEQPVAVTET 765
            Y++LL SRPL TK VT+  IA  GDV+CQL     A  EE    AQ  +++  H P   GG  SV++                    +D  RT +F  + AA+ AP+ H WY  L + + G TA    VKR+ALDQ LFAP F+ +F S +M+++G AAKI +KL+ DY  TLV NWG W+PAQ+INFR V   YQVL+AN VGFFWN  +S Q  K  L D E P  V  T
Sbjct:    2 YNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEKSSAQDVDELEHHEPFGDGGARSVASE-------------------IDWGRTLRFTFVGAAVVAPALHAWYGFLIQRLPG-TAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNAAKIDRKLRADYTTTLVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNKAVLKDMEHPAGVGVT 213
[Close]
BLAST of jgi.p|Trimin1|351176 vs. uniprot
Match: A0A4Q2YFM0_9BACT (Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2YFM0_9BACT)

HSP 1 Score: 160 bits (406), Expect = 1.780e-43
Identity = 90/213 (42.25%), Postives = 122/213 (57.28%), Query Frame = 1 
Query:   67 SLLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMS 705
            SL  +Y+ LL + PL+TK +TA  IA + DV CQ                               VS P+  +A  +  ++  DW      KRT  F ++N  LF P AHYWY  L+  + G T M AA+KR+ LDQ LFAPV +  FFSA+++V GE+ +IP KL+ D   T++ N+ +W+PAQLINF+ VP PY+VLWAN VGFFWN  +S
Sbjct:   30 SLWQQYNKLLETHPLMTKCITAGAIAAVADVTCQ-------------------------------VSFPSDEDANKSLLER-MDW------KRTRNFTIVNTFLFPPLAHYWYGFLSVKIVGTTFM-AAIKRVVLDQMLFAPVLLASFFSAVLLVNGESDRIPDKLRNDLPTTILTNYTVWIPAQLINFQFVPIPYRVLWANAVGFFWNIYLS 203
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BLAST of jgi.p|Trimin1|351176 vs. uniprot
Match: A0A7J8U408_9ROSI (Uncharacterized protein n=1 Tax=Gossypium klotzschianum TaxID=34286 RepID=A0A7J8U408_9ROSI)

HSP 1 Score: 147 bits (371), Expect = 9.850e-39
Identity = 81/220 (36.82%), Postives = 120/220 (54.55%), Query Frame = 1 
Query:   70 LLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETL 729
            L +RY ALLA  P+LTK VT+A++  +GD+ CQL   H                            AP+                  +D+KRT  F LL   L  P+ H+WY  L+  VK P A GA + R+ LDQF+F+P+F+G+F S L+ +EG+ +++  KL+Q+++  ++ NW +W+P Q +NFR VPQ +QVL AN +   WN I+S +  KE L
Sbjct:   18 LFNRYLALLAKHPVLTKAVTSALLTCVGDLICQLAIDH----------------------------APS------------------LDVKRTFLFTLLGLVLVGPTLHFWYLCLSNLVKLPGASGA-ILRLLLDQFMFSPIFIGVFLSTLVTLEGKPSQVIPKLRQEWFSAVIANWQLWIPFQFLNFRFVPQQFQVLAANFIALVWNVILSFKAHKEIL 190
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BLAST of jgi.p|Trimin1|351176 vs. uniprot
Match: A0A022Q510_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q510_ERYGU)

HSP 1 Score: 147 bits (370), Expect = 9.750e-38
Identity = 81/221 (36.65%), Postives = 118/221 (53.39%), Query Frame = 1 
Query:   67 SLLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETL 729
            SLL  Y +LLA  P++TK VT+A++  +GDV CQL                           +  V +P                    DLKRT  F LL   L  P+ H+WY  L+K +  P A GAA  R+ LDQFLF+P+F+G+F S L+ +EG  + +  KLKQ+++ +++ NW +W+P Q +NFR VPQ +QVL AN +   WN I+S +  K+ +
Sbjct:   87 SLLSWYLSLLAKYPVMTKAVTSALLTFVGDVICQLV--------------------------IDKVPSP--------------------DLKRTFIFTLLGLVLVGPTLHFWYLYLSKLIAAPGASGAAF-RLVLDQFLFSPIFIGVFLSTLVTLEGRPSDVIPKLKQEWFSSVLANWQLWIPFQFLNFRFVPQQFQVLAANSIALIWNVILSYKAHKQVI 260
[Close]
BLAST of jgi.p|Trimin1|351176 vs. uniprot
Match: A0A662Y1B5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1B5_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.850e-37
Identity = 82/210 (39.05%), Postives = 110/210 (52.38%), Query Frame = 1 
Query:   76 DRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMS 705
            + Y+ LL + PL TK VT   IAG GDV+CQL+      E +  G+ DV                                       KR   F  L  AL +P  H WY  L K V G ++  A VKR+ALDQ +FAP F+ +FFS+L+ +EG   ++P+KL+ D+WP    NW +W+PAQ+INFR VP   QVL+AN VG  WN+ +S
Sbjct:   40 ESYATLLETHPLSTKIVTGGAIAGAGDVSCQLFI-----EADDNGKFDV---------------------------------------KRAAIFTFLGGALISPVLHVWYGFLGKLVPGVSSR-AIVKRLALDQLVFAPTFLCVFFSSLLTLEGHLDQLPEKLRADWWPATKANWAVWVPAQIINFRFVPGSLQVLFANVVGLVWNSYLS 204
[Close]
BLAST of jgi.p|Trimin1|351176 vs. uniprot
Match: A0A1U8LD26_GOSHI (protein sym-1 n=12 Tax=Gossypium TaxID=3633 RepID=A0A1U8LD26_GOSHI)

HSP 1 Score: 146 bits (368), Expect = 3.990e-37
Identity = 85/231 (36.80%), Postives = 123/231 (53.25%), Query Frame = 1 
Query:   37 TGNVISSSSRSLLDRYSALLASRPLLTKGVTAAIIAGMGDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAKRQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGAAVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNWGIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETL 729
            TG+    S  SLL  Y ALLA  P+LTK VT+A +  +GD+ CQL   H            VP                                  ++D+KRT  F LL   L  P+ H+WY  L+  VK P A GA + R+ LDQF+F+P+F+G+F S L+ +EG+ +++  KL+Q+++  ++ NW +W+P Q +NFR VPQ +QVL AN +   WN I+S +  KE L
Sbjct:  106 TGDNGGESGWSLLSWYLALLAKHPVLTKAVTSAFLTCVGDLICQLAIDH------------VP----------------------------------SLDVKRTFLFTLLGLVLVGPTLHFWYLCLSNLVKLPGASGA-ILRLLLDQFMFSPIFIGVFLSTLVTLEGKPSQVIPKLRQEWFSAVIANWQLWIPFQFLNFRFVPQQFQVLAANFIALVWNVILSFKAHKEIL 289
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351176 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKC9_9STRA3.780e-216100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YNC4_9STRA8.060e-6551.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTE5_9STRA1.350e-5244.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JL95_9PHAE1.630e-5145.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTH2_ECTSI1.690e-5045.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4Q2YFM0_9BACT1.780e-4342.25Mpv17/PMP22 family protein n=1 Tax=Verrucomicrobia... [more]
A0A7J8U408_9ROSI9.850e-3936.82Uncharacterized protein n=1 Tax=Gossypium klotzsch... [more]
A0A022Q510_ERYGU9.750e-3836.65Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
A0A662Y1B5_9STRA1.850e-3739.05Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1U8LD26_GOSHI3.990e-3736.80protein sym-1 n=12 Tax=Gossypium TaxID=3633 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_82contigContig_82:474431..479194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351176|estExt_Genemark1.C_Ctg_820053
BRITEko00000,ko00001,ko01000,ko01002
KEGG Pathwayko04146,map04146
KEGG koko:K01301,ko:K13347,ko:K13348
EC3.4.17.21
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota
Evalue2.67e-52
Seed ortholog2880.D8LTH2
Hectar predicted targeting categoryother localisation
TranscriptId351498
TrackFilteredModels1
ProteinId351176
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351176gene_10982Tribonema minus UTEX_B_3156 geneContig_82 474431..479194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351176Trimin1|351176|estExt_Genemark1.C_Ctg_820053Tribonema minus UTEX_B_3156 polypeptideContig_82 474694..479194 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10982_6exon_10982_6Tribonema minus UTEX_B_3156 exonContig_82 474431..475054 -
exon_10982_5exon_10982_5Tribonema minus UTEX_B_3156 exonContig_82 476114..476214 -
exon_10982_4exon_10982_4Tribonema minus UTEX_B_3156 exonContig_82 477056..477181 -
exon_10982_3exon_10982_3Tribonema minus UTEX_B_3156 exonContig_82 477838..478077 -
exon_10982_2exon_10982_2Tribonema minus UTEX_B_3156 exonContig_82 478557..478687 -
exon_10982_1exon_10982_1Tribonema minus UTEX_B_3156 exonContig_82 479158..479194 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10982UTR3_10982Tribonema minus UTEX_B_3156 three_prime_UTRContig_82 474431..474693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10982CDS_10982Tribonema minus UTEX_B_3156 CDSContig_82 479158..479194 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10982 ID=mRNA_10982|Name=jgi.p|Trimin1|351176|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1259bp|location=Sequence derived from alignment at Contig_82:474431..479194- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACTTCCGTAGATCTTCCGCTCGCTGTGGAAACTGGCAACGTCAT
TTCGAGTTCATCGCGGTCTCTGCTGGACCGCTACTCTGCGCTGCTAGCGA
GTCGTCCGCTGCTCACCAAGGGCGTTACGGCGGCGATAATTGCTGGCATG
GGCGACGTCGCCTGCCAGCTGTACACAGCGCACCGCGCATGGGAGGAAGA
GGCTCAGGGCGAAAACGACGTACCCCCCCACCACCCCCACATTCACGGCG
GCGTGGCGTCCGTATCTGCGCCTGCGGCGGCGGAGGCGGGAATGGCGAAG
CGGCAGCAGCACAGGGACTGGTGGGGAGCGGTGGACTTGAAGCGCACGGG
GAAGTTCATGCTGCTGAACGCGGCGCTGTTCGCGCCCAGCGCGCACTACT
GGTACCAGGTGCTGGCGAAGTACGTCAAGGGGCCCACGGCCATGGGCGCG
GCTGTCAAGAGAATGGCGCTGGACCAGTTCCTGTTTGCGCCGGTCTTCAT
GGGACTGTTCTTCTCCGCGCTCATGGTGGTCGAGGGCGAGGCCGCCAAGA
TACCGCAGAAACTCAAGCAGGACTACTGGCCCACCCTCGTCAAGAACTGG
GGCATATGGATGCCGGCGCAGCTCATCAATTTTCGCCTCGTGCCGCAGCC
GTATCAGGTGCTCTGGGCCAACGGCGTGGGCTTCTTCTGGAACGCCATCA
TGTCCGCGCAGTGCTTCAAGGAGACACTGGACGACGAGGAGCAGCCCGTG
GCGGTTACGGAAACGAAACTGTCAGTCGCAGCGAGCAGCGGCAGCAGCGG
CAGCGGCCCCAGCGCCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCAGCA
AGGTCATTCGCGGATCCGCGCCTGCCGCGAATGCAGCGCCGCTGCGGGAG
GAAGTCACGGTGCACGTCGTGCCGACGGCGGCCGCGAACGAGCAGTACAC
GCTGCAAGTGCGGCGGAGGGGGGCGTCAACTTCAACATCTCCGTAGGGCG
GTATTGCAGTAGATAAGACAGCAGGCACTTGTCGGCGGCACGCTGATCGC
TGCTGCTGCCGCCGCCTGTCAGGTGCGCGCTAGAGCTTTGCCCGAATGGC
CCAAAATTGCCAGGGGGTTGGGCACAGGGCGGGTCAATAGGGGCTCACAA
TCCTCAGGTTCAAACGCAGTTACAAGCAGATTGCCCGCCATTGTCTGGTG
TGACATGTACAAACTGTTCGCACGGTCCTGGAGCGCCTGGAACCGTTTTT
AGGACGCGC
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protein sequence of jgi.p|Trimin1|351176

>Trimin1|351176|estExt_Genemark1.C_Ctg_820053 ID=Trimin1|351176|estExt_Genemark1.C_Ctg_820053|Name=jgi.p|Trimin1|351176|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=332bp
MSTSVDLPLAVETGNVISSSSRSLLDRYSALLASRPLLTKGVTAAIIAGM
GDVACQLYTAHRAWEEEAQGENDVPPHHPHIHGGVASVSAPAAAEAGMAK
RQQHRDWWGAVDLKRTGKFMLLNAALFAPSAHYWYQVLAKYVKGPTAMGA
AVKRMALDQFLFAPVFMGLFFSALMVVEGEAAKIPQKLKQDYWPTLVKNW
GIWMPAQLINFRLVPQPYQVLWANGVGFFWNAIMSAQCFKETLDDEEQPV
AVTETKLSVAASSGSSGSGPSAGGGSGGGGGGSKVIRGSAPAANAAPLRE
EVTVHVVPTAAANEQYTLQVRRRGASTSTSP*
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mRNA from alignment at Contig_82:474431..479194-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10982 ID=mRNA_10982|Name=jgi.p|Trimin1|351176|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4764bp|location=Sequence derived from alignment at Contig_82:474431..479194- (Tribonema minus UTEX_B_3156 )
ATGTCAACTTCCGTAGATCTTCCGCTCGCTGTGGAAAGTGATACGTACTG
AAGCGGGGACCGGCAGCTCGTGCGGCTTCTGTAGCTGCAAGCTTAAGGTG
AGGGTCGCTGGCAGCTGCTGAGGCCAGACGGCAGCAGCGCGAAGGCGCTT
GCAACACAATTGTCGGAATGTTGGAATGTTGGCCTCTGGTGGTGCAGCTG
ATGTGACTGGACCAAAGAGACAGTGTACATATGCCTTTCTTTGAATGGTC
AGCCAGTTGTCTGAAGCATGAGCAATCCCGATAGATTGCAATTTGGTCCA
ACCACGCCTGCCTTCTCTGCTGTCCTGCCTGGCTATTCCTCCAGGCCCTA
GACTACCCGCGCCTTCTGCCTCGCAGCCCCAGCCGCCATCTCGTCAGGAA
AATGATGATGCGATCTCAAGCAGTCAGGGGCTGCTCTAGCGCCGTTCAGA
CAACAATCCGAGCACGACGGGTTCGCCACTTAAATTCTGGCCCAGCCGCG
GCCGCAGCTGGCAACGTCATTTCGAGTTCATCGCGGTCTCTGCTGGACCG
CTACTCTGCGCTGCTAGCGAGTCGTCCGCTGCTCACCAAGGGCGTTACGG
CGGCGATAATTGCTGGCATGGGCGACGTCGCCTGCCAGGTAACTGACATG
TTGCCGAAATATGTGACTAATGTGTCGGAGTCTCTGAAGCATACTGTGGC
GTTGGCTTTGGGCGTCTTCTCAATTGCGTCGTCCATCGTCACTCGCACAA
TTCATGAGCAGCAGGGTAAACCCCAGATTTCCGAAGCTCGAACACAACGA
CACCATGCGCAAGCGGATGCTTGAGCATATGCAACTCGAACCGCAACAGT
CATGCGACGACTGATGGCTTAGGGCAAAGGCCAATCACCACCACGCAACC
CTTGCCGTGTCACTCCCTCAAGATCCGCTGCCAGCACCGGCAGCCATGAC
GATTGGTTGACAAACATTCTGCAACTTGCCTGAGCTTACTCAACTGCCTT
GGCAGTAACTTCAACTACGTCAACTGCTGCTGCAGTAGCTGCAACTGCTA
TTGCAGTAATTTCAACTGCTACTGCAGCAACTTCAACGCCACCGATCGCG
TCGCCCGCCACGCGCAGCTGTACACAGCGCACCGCGCATGGGAGGAAGAG
GCTCAGGGCGAAAACGACGTACCCCCCCACCACCCCCACATTCACGGCGG
CGTGGCGTCCGTATCTGCGCCTGCGGCGGCGGAGGCGGGAATGGCGAAGC
GGCAGCAGCACAGGGACTGGTGGGGAGCGGTGGACTTGAAGCGCACGGGG
AAGTTCATGCTGCTGAACGCGGCGCTGTTCGCGCCCAGCGCGCACTACTG
GTACCAGGTGCGTCACCGCCCCTCATTGTGTACCTCAACAAGCATCGCTG
GCATCAGTTGTGTCACCATCCAGTGTGTACTTCACCAATGTAAGGCTCTG
GAGGTCGGAGGGTGACGTAGCAGCGCCATCACTTGCACGTCGCGGCGAAC
AAATGCTGGCCATCGCACCTCAACAGCGGTGGCCGAGACGGCATTTGTTG
AATTTGAAGTTTGGATGTGAAGTTCACATCTGAAGCTTCCAGCTGACACT
CCCGGCGTGATGCAACACGTACAACATCTGTCGCCTCATCACCAATCCTA
TTGCTTACGGCTGCCGCGTAGGATTTAAAGGTTTGAGTTGAAGTTTCCAG
CTGACGCTTCCTGCGTGGTGCAATGCTGCAAAACACACATCATCTGTCGA
CTTTACCAACACATCCTATCACGATGATGCCACTGTGCAGGATTTGAAGT
TTGAAGTTGCCAGCTGACACTCACACTCCCTGCGTGACGCACCGCACACA
GCTTCTGCCGCCTCATCAACAGGTGCCACTGATTATCAATAAAGCGATGC
AGCTGCGCAGACTTGAAGGTTAGATTTGAAAATACCCGGCTGGCACTCTC
TGCGTGATGCACCGTACACAGCATCTGACAGCAGGTCCCATTGTTATTAC
TGTCGCTGCGCAGGTGCTGGCGAAGTACGTCAAGGGGCCCACGGCCATGG
GCGCGGCTGTCAAGAGAATGGCGCTGGACCAGTTCCTGTTTGCGCCGGTC
TTCATGGGACTGTTCTTCTCCGCGCTCATGGTGGTCGAGGTGAGGTAGCG
CGCACTTGCGGCAAATGGGTCATCACGGTCCTTTCACAGTCTATGTACTT
CATACACTTAATTGTGAGCGTCGTGAATGCTAGCTGGCTTTCACACTACG
AAGAGCGCAGGATCAGCTGCTGAGCATGGCGCCGCTGGCACATCGAGGCT
CTGTCCGTTCACTTCAAGTTGAATTTGAGCCCCAGGAAGTACTTCATCAT
GAGCAGACCTGCTCCACGTCTTGTGCGGGCGTCGCAAAAGGTTTCAAGAG
TGCAAAGTGCACTTGAAGATTCCTCGTTTGCGCTCAAGGATGTACAGTAA
AATTCATTGAGGTTTGCGGCAATGCCGACCACTTTTTTTATGCTGCAGCG
ATCTTTGGTGCGCTATAGTGTGTTGATCCCATATTTACTGGCTGCAACTG
GCTCTGGACAGAAGTGGGCAAAGATTCAGAATATGGCATGCAATGTTGAG
GTTACAGAGGGGGACACACAAGTGGAGGTGCGAGTGCAGCACGATGGACA
TCTTGGAGATCTAACTGCTTGCACGATGAAGGTGTGAACATTTCAACACG
ACAGGACTGTAAGGCACACCCTTGTCATACGCATGTTGTTGGCCTTTTGG
TAGATGATTTGTTGTTGAACACAACTCCAACAAACCAAATCTGCCCTGGA
GTGTGTATGCATGTACTAGATGCGCAAGCGCACGCATGGTCGAGCCCTGG
TCAACAAGGCACGCTCGCAATCGTACTCAATGGGTTTCGGCAACCCCCCC
TGACTGGTCCCTCTTGGTCATGCTTGATGCTGACCTCAACTGCAACGCCT
GCTGCTAACTTCAATGCCTAACTTCAACAGGGCGAGGCCGCCAAGATACC
GCAGAAACTCAAGCAGGACTACTGGCCCACCCTCGTCAAGAACTGGGGCA
TATGGATGCCGGCGCAGCTCATCAATTTTCGGTGAGTCTCGCAGCAGTGC
TTAAGATGCCAAACTTCAACCATGACTGTATCAGCTTCAACTTCTGAGGG
AGCCAGCGCAGCAACTGTTGGTGAGTTGTTGCAGCGTTGCGGCAATAGTC
GGGGCTATCGGAGTGCGAGCACTTGATGATGGGGTAGCTTGGGGTGCGTC
AACCTCACCTGACGGCGCGGCTGCTTTTTTTATTTTTGAGGTCATCAAAC
CTCAACTGCGACTTCAGCTTCAACTGCACACCGCACCTGGTGAGACGCAC
CCCGCTTAAATTGAATATCCAACTTCAACTGCATCATCCCGTAGTCGGCG
CACATCTCGCCCACGCTCGTGTCGCACTGACGATGGCATTCGGTGCTGCG
GCCTGCACCACGTGCTTGTAACACAGACACCCCCTGTCACAAGGGCCTTT
TGTGAGCAGCGCGCTGCGTGTGGACTCACAATGAACTTCAAGTTGCCACT
TCCTGTTCAACTACAACTTCTAGTGTTGCGAGCGCCTGTCCTTCCTGTGA
CCGCGCCGCGTCAGACCGCGGAAGCCCTGTCGTCCCGCTGCGACAGCTCC
AGCCGCCATACGCCACACCGCCGCTTGCAAGGAAGGCTCGCATGACCGCT
CGATCTCAAGCAGTCTCTCATGAAGGCACAGGCAGCGCCACGCAGCCTTA
GACTGATGCGCACATGCGCCTGCGAGAAACTGTGCCATGCGCCGTGCGCC
GCACCCCCCCTCTCTCATGACCGCTCGATCTCATGCAGTCTCACGCAAAG
GCACAGACAGCGCCGCGCGCACCCATCTGCGTCGTGATGAGTGCTGAGCG
CTGTCCCCCCCCTCCCCCCCTCCCCTGCTCAAACCCCTTCATCGCCACTA
TCTGGGGGGCTGCCCCCGTGCACTCTGCGCTGCGCCCGCCTGCTCTCTCT
CTGTGCGTCTCTCGCCACGATGCGCGCAACACACACCGCTTCGCCCCCTG
TATCACAGATGCCTTTGCCACAACATCAGGGTTTGGAGCACTCGAGCGCT
GCCTCTGACCCCCTCCCCCCCCTTCTCCACACTTGTGCAGCCTCGTGCCG
CAGCCGTATCAGGTGCTCTGGGCCAACGGCGTGGGCTTCTTCTGGAACGC
CATCATGTCCGCGCAGTGCTTCAAGGAGACACTGGACGACGAGGAGCAGC
CCGTGGCGGTTACGGAAACGAAACTGTCAGTCGCAGCGAGCAGCGGCAGC
AGCGGCAGCGGCCCCAGCGCCGGCGGCGGCAGCGGCGGCGGCGGCGGCGG
CAGCAAGGTCATTCGCGGATCCGCGCCTGCCGCGAATGCAGCGCCGCTGC
GGGAGGAAGTCACGGTGCACGTCGTGCCGACGGCGGCCGCGAACGAGCAG
TACACGCTGCAAGTGCGGCGGAGGGGGGCGTCAACTTCAACATCTCCGTA
GGGCGGTATTGCAGTAGATAAGACAGCAGGCACTTGTCGGCGGCACGCTG
ATCGCTGCTGCTGCCGCCGCCTGTCAGGTGCGCGCTAGAGCTTTGCCCGA
ATGGCCCAAAATTGCCAGGGGGTTGGGCACAGGGCGGGTCAATAGGGGCT
CACAATCCTCAGGTTCAAACGCAGTTACAAGCAGATTGCCCGCCATTGTC
TGGTGTGACATGTACAAACTGTTCGCACGGTCCTGGAGCGCCTGGAACCG
TTTTTAGGACGCGC
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Coding sequence (CDS) from alignment at Contig_82:474431..479194-

>mRNA_10982 ID=mRNA_10982|Name=jgi.p|Trimin1|351176|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=996bp|location=Sequence derived from alignment at Contig_82:474431..479194- (Tribonema minus UTEX_B_3156 )
ATGTCAACTTCCGTAGATCTTCCGCTCGCTGTGGAAACTGGCAACGTCAT
TTCGAGTTCATCGCGGTCTCTGCTGGACCGCTACTCTGCGCTGCTAGCGA
GTCGTCCGCTGCTCACCAAGGGCGTTACGGCGGCGATAATTGCTGGCATG
GGCGACGTCGCCTGCCAGCTGTACACAGCGCACCGCGCATGGGAGGAAGA
GGCTCAGGGCGAAAACGACGTACCCCCCCACCACCCCCACATTCACGGCG
GCGTGGCGTCCGTATCTGCGCCTGCGGCGGCGGAGGCGGGAATGGCGAAG
CGGCAGCAGCACAGGGACTGGTGGGGAGCGGTGGACTTGAAGCGCACGGG
GAAGTTCATGCTGCTGAACGCGGCGCTGTTCGCGCCCAGCGCGCACTACT
GGTACCAGGTGCTGGCGAAGTACGTCAAGGGGCCCACGGCCATGGGCGCG
GCTGTCAAGAGAATGGCGCTGGACCAGTTCCTGTTTGCGCCGGTCTTCAT
GGGACTGTTCTTCTCCGCGCTCATGGTGGTCGAGGGCGAGGCCGCCAAGA
TACCGCAGAAACTCAAGCAGGACTACTGGCCCACCCTCGTCAAGAACTGG
GGCATATGGATGCCGGCGCAGCTCATCAATTTTCGCCTCGTGCCGCAGCC
GTATCAGGTGCTCTGGGCCAACGGCGTGGGCTTCTTCTGGAACGCCATCA
TGTCCGCGCAGTGCTTCAAGGAGACACTGGACGACGAGGAGCAGCCCGTG
GCGGTTACGGAAACGAAACTGTCAGTCGCAGCGAGCAGCGGCAGCAGCGG
CAGCGGCCCCAGCGCCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCAGCA
AGGTCATTCGCGGATCCGCGCCTGCCGCGAATGCAGCGCCGCTGCGGGAG
GAAGTCACGGTGCACGTCGTGCCGACGGCGGCCGCGAACGAGCAGTACAC
GCTGCAAGTGCGGCGGAGGGGGGCGTCAACTTCAACATCTCCGTAG
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