mRNA_10879 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130065
Unique NamemRNA_10879
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A836C8S8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S8_9STRA)

HSP 1 Score: 433 bits (1113), Expect = 1.470e-153
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1
Query:    1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645
            LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW
Sbjct:    1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 215          
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A836C984_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C984_9STRA)

HSP 1 Score: 342 bits (876), Expect = 1.390e-114
Identity = 165/215 (76.74%), Postives = 183/215 (85.12%), Query Frame = 1
Query:    1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645
            L NTG TTDTQL NFFRKCVTPGSTINLGILGGSISQ   GYQV W++ L+QMCP S++ LY+GAR STGSMTLG+CAK S+G PE+VDLFV+EFTLNDGS+YT DG F+SQSYEFLLRN +T F+YAPAIITLH WG PFVY+S QP LVALAQRY LSAIS+RDAVWPYYTAQREPLA+  E T DGIHPS YV K AADLLH Y+V KFL W
Sbjct:   17 LNNTGATTDTQLQNFFRKCVTPGSTINLGILGGSISQMLAGYQVTWLAYLQQMCPTSTVKLYNGARPSTGSMTLGYCAKTSVGGPEQVDLFVTEFTLNDGSKYTTDGQFSSQSYEFLLRNTLTAFQYAPAIITLHLWGFPFVYDSPQPALVALAQRYALSAISIRDAVWPYYTAQREPLASKSEVTVDGIHPSAYVHKFAADLLHTYVVGKFLEW 231          
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A835YK35_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK35_9STRA)

HSP 1 Score: 269 bits (688), Expect = 7.030e-89
Identity = 124/211 (58.77%), Postives = 164/211 (77.73%), Query Frame = 1
Query:   13 GTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645
            G++ D Q+ NFFRKCVTPG+ IN+GILGGSISQF  GYQV +I +L +MCP + + LY+GARSST SMTLG+CA  ++G P E+DLF+SEFT NDG +YT DGAF+S  YE +LR+V+T F Y+P+++TLHFWG  F +++ Q  LV LA+RYK+SA+S+RD +WPYYTA R+P  + ++CT DG HPS  V +L ADLL  + V +FLAW
Sbjct:    1 GSSADVQMQNFFRKCVTPGAVINVGILGGSISQFGYGYQVTFIKQLAEMCPSAEVKLYNGARSSTPSMTLGYCAVTAMGGPSELDLFISEFTYNDGVKYTTDGAFSSLPYELMLRSVLTAFPYSPSVLTLHFWGLDFTHKTPQAALVKLARRYKVSALSIRDVIWPYYTAGRDPYGSKDKCTIDGRHPSLAVHQLTADLLQTHFVTRFLAW 211          
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A835Z8A9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A9_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.630e-70
Identity = 102/167 (61.08%), Postives = 132/167 (79.04%), Query Frame = 1
Query:   10 TGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWP 510
            TG++TD Q+ NFFRKCVTPG+ IN+GILGGSISQ   GYQ+ +I  L+ MCP + I LYDGAR ST SMTLG+CA  ++G P E+DLF+SEFTLNDG +YT DGAF+S  YE +LR+V++ F Y+P+++TLHFWG  F +++ Q DL+ LA RY LSAIS+RD +WP
Sbjct:   33 TGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTADGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 199          
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A836CAR2_9STRA (RanBP2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR2_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.030e-54
Identity = 97/213 (45.54%), Postives = 142/213 (66.67%), Query Frame = 1
Query:   13 GTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRY--TIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645
            G  TD QL NF+R+CVT G+TI++GILGGSIS    GY   + +R+++MCP + + ++ GAR++ GS+TLG CA  ++    ++DLFV++FTLND  +Y  TI G F S  YE +LRNV+T F+  PA+  L+FWG  F Y++ Q +L  LA+ Y  + IS+RD VWP+YT+   P +T +   KD  HP+  V +L  DLL  Y+ ++F+ W
Sbjct: 1291 GANTDKQLENFYRRCVTSGATIHIGILGGSISVDKEGYVGMFANRVREMCPSAYVAVHSGARNAAGSLTLGMCASTAM-LTTKLDLFVADFTLNDSYKYKHTIKGIFTSTPYEIMLRNVLTQFEVPPAVFNLYFWGGAFTYDTQQDELDTLAKLYSTTGISLRDLVWPFYTSGTLPFSTKDHIVKDIHHPNRRVCQLTGDLLVLYMAERFVGW 1502          
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A836CAJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ4_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.900e-51
Identity = 84/112 (75.00%), Postives = 91/112 (81.25%), Query Frame = 1
Query:  310 TIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645
            T DG F+SQ YEFLLRN +  FKYAPAI TLH WG PFVY+S QP LVALA+RY LSAIS+RDAVWPYYTAQREPLAT  E T DGIHPS YVQ+L ADLLH Y+V KFL W
Sbjct:   10 TTDGVFSSQPYEFLLRNTLAAFKYAPAINTLHVWGFPFVYDSPQPALVALAKRYALSAISIRDAVWPYYTAQREPLATKSEVTMDGIHPSPYVQRLTADLLHTYVVGKFLEW 121          
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A835ZIV9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIV9_9STRA)

HSP 1 Score: 169 bits (429), Expect = 3.140e-49
Identity = 79/139 (56.83%), Postives = 106/139 (76.26%), Query Frame = 1
Query:  229 CAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645
            CA+ ++GSP  +DL V+EFTLNDG +Y I GAF+S  YE +LR +++ F + PA++TLHFWGS F ++S Q  LVAL++ Y L+AIS+RDA+WPYY +QREP AT +ECT DG+HPS  V++L ADLL  YI  KF+ W
Sbjct:    2 CAEDAMGSPTRLDLAVAEFTLNDGIKYDIGGAFDSLPYELMLRTLLSAFDHPPALLTLHFWGSRFEFKSPQAALVALSEAYDLTAISIRDAIWPYYKSQREPFATKQECTLDGLHPSLAVEQLTADLLFFYINLKFVKW 140          
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.010e-48
Identity = 93/216 (43.06%), Postives = 135/216 (62.50%), Query Frame = 1
Query:    1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTID-GAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645
            L + G  TD QL+  F KC+TPGSTI +G LGGSI+   + Y       + QMCP +++  ++GARSS G++TLG CA+  + +P  +DL VSEF+LND + YT D G F++  +E L R +++ +  APA+  L FWG  F ++SAQP   A+ + Y ++ IS+RD VWPYY   + P A  ++   DG HP+D  QK  A+LL  Y+  +F  W
Sbjct:   81 LKHRGAITDQQLHPLFLKCITPGSTIRIGALGGSITHLPSSYIWPVGRLIAQMCPEATVETFNGARSSHGALTLGMCART-VTAPA-LDLAVSEFSLNDRAHYTADDGTFSALPFELLTRTLLSAYDPAPAVFNLFFWGMSFSHDSAQPWHEAVGEHYDVTGISLRDLVWPYYETSKAPYARRQDVCVDGHHPNDRFQKFTAELLLLYVAQRFQEW 294          
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A836CHL6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 3.830e-48
Identity = 93/218 (42.66%), Postives = 128/218 (58.72%), Query Frame = 1
Query:    1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTG---YQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645
            L N G  TD QL   + KC+TPGS I LG LGGSIS    G   Y +     L+ MCP +++ L++ A  +TGS+ LG CA++ +G  + VD+ + EF+LND + Y   G   S +YE  +R  +T+F++APAI  L FWG  F   SAQ     +A+ Y L+ IS+RDAVWPY TAQR P A   +  KD  HP++        LL  Y+ ++FL W
Sbjct:   13 LTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLG--QHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDW 228          
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A835Z775_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z775_9STRA)

HSP 1 Score: 158 bits (400), Expect = 6.680e-45
Identity = 80/200 (40.00%), Postives = 124/200 (62.00%), Query Frame = 1
Query:   13 GTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTI-DGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADL 609
            G +T+ QL N F KCVTPG+ IN+G +GGSI++    +   + + L  +CP + + +++GAR+S G++TLG CA+A +    E+D+ + EF+LND  +YT+ +G F+S  YE   R V+T     PA+  + FWG  F Y+SAQP    + + Y ++ IS+RD VWPY++  R P AT  +   D  HP+ +V  L A +
Sbjct:   11 GASTEAQLRNVFLKCVTPGADINVGAIGGSITEHDDSWAGNFSALLSHLCPRAQVRMHNGARASHGALTLGLCARAVMA--PELDIAMLEFSLNDQGQYTLPNGTFSSLPYELATRTVLTGTDPTPAVFGISFWGRSFTYDSAQPYHEEVHKLYGVTGISLRDMVWPYFSKGRAPFATKADVCSDVHHPNAFVHGLTAQV 208          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A836C8S8_9STRA1.470e-153100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C984_9STRA1.390e-11476.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YK35_9STRA7.030e-8958.77Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z8A9_9STRA1.630e-7061.08Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CAR2_9STRA1.030e-5445.54RanBP2-type domain-containing protein n=1 Tax=Trib... [more]
A0A836CAJ4_9STRA1.900e-5175.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZIV9_9STRA3.140e-4956.83Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZKB1_9STRA2.010e-4843.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHL6_9STRA3.830e-4842.66Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z775_9STRA6.680e-4540.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_70contigContig_70:298911..300033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130065|gw1.70.14.1
Descriptionlipolytic protein G-D-S-L family
COG categoryE
Max annot lvl2|Bacteria
EggNOG OGsCOG2755@1|root,COG2755@2|Bacteria
Evalue9.18e-08
Seed ortholog794903.OPIT5_05820
Hectar predicted targeting categoryother localisation
TranscriptId130387
TrackFilteredModels1
ProteinId130065
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130065gene_10879Tribonema minus UTEX_B_3156 geneContig_70 298911..300033 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10879_1exon_10879_1Tribonema minus UTEX_B_3156 exonContig_70 298911..299216 +
exon_10879_2exon_10879_2Tribonema minus UTEX_B_3156 exonContig_70 299695..300033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10879CDS_10879Tribonema minus UTEX_B_3156 CDSContig_70 298911..299216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130065Trimin1|130065|gw1.70.14.1Tribonema minus UTEX_B_3156 polypeptideContig_70 298911..300033 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10879 ID=mRNA_10879|Name=jgi.p|Trimin1|130065|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=645bp|location=Sequence derived from alignment at Contig_70:298911..300033+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGGCCAACACCGGAACAACTACTGACACCCAGCTGAACAACTTCTTTCG
CAAGTGCGTCACCCCGGGATCCACCATCAACCTGGGGATACTGGGGGGGA
GCATCTCACAGTTTTCCACAGGATACCAGGTCAAGTGGATCTCGCGACTG
AAGCAAATGTGTCCTGTATCCAGCATCAACCTCTATGATGGTGCGCGTTC
AAGCACGGGATCCATGACCCTGGGGTTCTGTGCGAAAGCCTCCATCGGCA
GTCCAGAGGAGGTGGACCTTTTTGTCTCGGAATTTACGCTCAACGACGGC
AGCAGGTACACCATCGACGGCGCATTCAACTCCCAGTCGTACGAGTTTCT
CCTCCGCAACGTCATCACCACGTTCAAGTATGCTCCCGCCATCATCACAC
TCCACTTCTGGGGCTCCCCATTTGTCTACGAAAGCGCTCAGCCAGATCTG
GTCGCGCTCGCCCAGCGCTACAAGCTCAGCGCAATATCGATGCGCGACGC
CGTCTGGCCCTACTACACGGCTCAGCGGGAGCCGCTCGCGACCGTTGAGG
AGTGCACCAAGGACGGGATCCATCCCTCGGACTATGTGCAGAAGCTTGCT
GCAGATCTACTCCACAAATACATTGTGGACAAGTTCCTAGCCTGG
back to top

protein sequence of jgi.p|Trimin1|130065

>Trimin1|130065|gw1.70.14.1 ID=Trimin1|130065|gw1.70.14.1|Name=jgi.p|Trimin1|130065|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=215bp
LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRL
KQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDG
SRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDL
VALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLA
ADLLHKYIVDKFLAW
back to top

mRNA from alignment at Contig_70:298911..300033+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10879 ID=mRNA_10879|Name=jgi.p|Trimin1|130065|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1123bp|location=Sequence derived from alignment at Contig_70:298911..300033+ (Tribonema minus UTEX_B_3156 )
CTGGCCAACACCGGAACAACTACTGACACCCAGCTGAACAACTTCTTTCG CAAGTGCGTCACCCCGGGATCCACCATCAACCTGGGGATACTGGGGGGGA GCATCTCACAGTTTTCCACAGGATACCAGGTCAAGTGGATCTCGCGACTG AAGCAAATGTGTCCTGTATCCAGCATCAACCTCTATGATGGTGCGCGTTC AAGCACGGGATCCATGACCCTGGGGTTCTGTGCGAAAGCCTCCATCGGCA GTCCAGAGGAGGTGGACCTTTTTGTCTCGGAATTTACGCTCAACGACGGC AGCAGGGTGAGTGAGCTCACGATGCCGAGTGTAGAATGACTGTATCATGC TAGTGACTCTGTGTCAACAGTGCTTGTCAGCCGTGCTCGCGTACCGCTAG ATTAAGTGGTGACATAGGCAGTGTTGCACTTTTGACGTACTGCAAGCTAT GTGCTGCTGACTGCATCTGCAAATGGGTGCAGCATCGATGTCGAGCATAG AGCCAAGCACAGACCGCCACGTGCGGTAAATCTCCGGGTGTTGAGCCCGC TGTCACTGGTGACTAGAATCACTGCAGCAGCTGATCATTGAGCAGAAGCG GCAAAGCTTTACACTCCCTTGTGCTGCCTCCAATCAATGTTTGATGGCTC CGTGATGACTTCACTTTCACGGACGGTGCACGTCCAGCCGTGCTTCAGAT GACGCAGAACCGCCGCTGCGCTTGCTCGGCTGCAGCTGCCTGACCCCACA ACCTCACGCTTCCGTCTCTTGAACCGCCCCTCAGTACACCATCGACGGCG CATTCAACTCCCAGTCGTACGAGTTTCTCCTCCGCAACGTCATCACCACG TTCAAGTATGCTCCCGCCATCATCACACTCCACTTCTGGGGCTCCCCATT TGTCTACGAAAGCGCTCAGCCAGATCTGGTCGCGCTCGCCCAGCGCTACA AGCTCAGCGCAATATCGATGCGCGACGCCGTCTGGCCCTACTACACGGCT CAGCGGGAGCCGCTCGCGACCGTTGAGGAGTGCACCAAGGACGGGATCCA TCCCTCGGACTATGTGCAGAAGCTTGCTGCAGATCTACTCCACAAATACA TTGTGGACAAGTTCCTAGCCTGG
back to top

Coding sequence (CDS) from alignment at Contig_70:298911..300033+

>mRNA_10879 ID=mRNA_10879|Name=jgi.p|Trimin1|130065|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=645bp|location=Sequence derived from alignment at Contig_70:298911..300033+ (Tribonema minus UTEX_B_3156 )
CTGGCCAACACCGGAACAACTACTGACACCCAGCTGAACAACTTCTTTCG
CAAGTGCGTCACCCCGGGATCCACCATCAACCTGGGGATACTGGGGGGGA
GCATCTCACAGTTTTCCACAGGATACCAGGTCAAGTGGATCTCGCGACTG
AAGCAAATGTGTCCTGTATCCAGCATCAACCTCTATGATGGTGCGCGTTC
AAGCACGGGATCCATGACCCTGGGGTTCTGTGCGAAAGCCTCCATCGGCA
GTCCAGAGGAGGTGGACCTTTTTGTCTCGGAATTTACGCTCAACGACGGC
AGCAGGTACACCATCGACGGCGCATTCAACTCCCAGTCGTACGAGTTTCT
CCTCCGCAACGTCATCACCACGTTCAAGTATGCTCCCGCCATCATCACAC
TCCACTTCTGGGGCTCCCCATTTGTCTACGAAAGCGCTCAGCCAGATCTG
GTCGCGCTCGCCCAGCGCTACAAGCTCAGCGCAATATCGATGCGCGACGC
CGTCTGGCCCTACTACACGGCTCAGCGGGAGCCGCTCGCGACCGTTGAGG
AGTGCACCAAGGACGGGATCCATCCCTCGGACTATGTGCAGAAGCTTGCT
GCAGATCTACTCCACAAATACATTGTGGACAAGTTCCTAGCCTGG
back to top