mRNA_10879 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A836C8S8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S8_9STRA) HSP 1 Score: 433 bits (1113), Expect = 1.470e-153 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1 Query: 1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW Sbjct: 1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 215
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A836C984_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C984_9STRA) HSP 1 Score: 342 bits (876), Expect = 1.390e-114 Identity = 165/215 (76.74%), Postives = 183/215 (85.12%), Query Frame = 1 Query: 1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645 L NTG TTDTQL NFFRKCVTPGSTINLGILGGSISQ GYQV W++ L+QMCP S++ LY+GAR STGSMTLG+CAK S+G PE+VDLFV+EFTLNDGS+YT DG F+SQSYEFLLRN +T F+YAPAIITLH WG PFVY+S QP LVALAQRY LSAIS+RDAVWPYYTAQREPLA+ E T DGIHPS YV K AADLLH Y+V KFL W Sbjct: 17 LNNTGATTDTQLQNFFRKCVTPGSTINLGILGGSISQMLAGYQVTWLAYLQQMCPTSTVKLYNGARPSTGSMTLGYCAKTSVGGPEQVDLFVTEFTLNDGSKYTTDGQFSSQSYEFLLRNTLTAFQYAPAIITLHLWGFPFVYDSPQPALVALAQRYALSAISIRDAVWPYYTAQREPLASKSEVTVDGIHPSAYVHKFAADLLHTYVVGKFLEW 231
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A835YK35_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK35_9STRA) HSP 1 Score: 269 bits (688), Expect = 7.030e-89 Identity = 124/211 (58.77%), Postives = 164/211 (77.73%), Query Frame = 1 Query: 13 GTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645 G++ D Q+ NFFRKCVTPG+ IN+GILGGSISQF GYQV +I +L +MCP + + LY+GARSST SMTLG+CA ++G P E+DLF+SEFT NDG +YT DGAF+S YE +LR+V+T F Y+P+++TLHFWG F +++ Q LV LA+RYK+SA+S+RD +WPYYTA R+P + ++CT DG HPS V +L ADLL + V +FLAW Sbjct: 1 GSSADVQMQNFFRKCVTPGAVINVGILGGSISQFGYGYQVTFIKQLAEMCPSAEVKLYNGARSSTPSMTLGYCAVTAMGGPSELDLFISEFTYNDGVKYTTDGAFSSLPYELMLRSVLTAFPYSPSVLTLHFWGLDFTHKTPQAALVKLARRYKVSALSIRDVIWPYYTAGRDPYGSKDKCTIDGRHPSLAVHQLTADLLQTHFVTRFLAW 211
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A835Z8A9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A9_9STRA) HSP 1 Score: 222 bits (566), Expect = 1.630e-70 Identity = 102/167 (61.08%), Postives = 132/167 (79.04%), Query Frame = 1 Query: 10 TGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWP 510 TG++TD Q+ NFFRKCVTPG+ IN+GILGGSISQ GYQ+ +I L+ MCP + I LYDGAR ST SMTLG+CA ++G P E+DLF+SEFTLNDG +YT DGAF+S YE +LR+V++ F Y+P+++TLHFWG F +++ Q DL+ LA RY LSAIS+RD +WP Sbjct: 33 TGSSTDLQMQNFFRKCVTPGAVINVGILGGSISQMDYGYQINFIKHLEDMCPSADIKLYDGARGSTPSMTLGYCAVTAMGGPSELDLFISEFTLNDGVKYTADGAFSSLPYELMLRSVLSAFPYSPSVMTLHFWGFNFTHKTPQADLLKLAHRYNLSAISIRDVIWP 199
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A836CAR2_9STRA (RanBP2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR2_9STRA) HSP 1 Score: 197 bits (502), Expect = 1.030e-54 Identity = 97/213 (45.54%), Postives = 142/213 (66.67%), Query Frame = 1 Query: 13 GTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRY--TIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645 G TD QL NF+R+CVT G+TI++GILGGSIS GY + +R+++MCP + + ++ GAR++ GS+TLG CA ++ ++DLFV++FTLND +Y TI G F S YE +LRNV+T F+ PA+ L+FWG F Y++ Q +L LA+ Y + IS+RD VWP+YT+ P +T + KD HP+ V +L DLL Y+ ++F+ W Sbjct: 1291 GANTDKQLENFYRRCVTSGATIHIGILGGSISVDKEGYVGMFANRVREMCPSAYVAVHSGARNAAGSLTLGMCASTAM-LTTKLDLFVADFTLNDSYKYKHTIKGIFTSTPYEIMLRNVLTQFEVPPAVFNLYFWGGAFTYDTQQDELDTLAKLYSTTGISLRDLVWPFYTSGTLPFSTKDHIVKDIHHPNRRVCQLTGDLLVLYMAERFVGW 1502
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A836CAJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ4_9STRA) HSP 1 Score: 177 bits (448), Expect = 1.900e-51 Identity = 84/112 (75.00%), Postives = 91/112 (81.25%), Query Frame = 1 Query: 310 TIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645 T DG F+SQ YEFLLRN + FKYAPAI TLH WG PFVY+S QP LVALA+RY LSAIS+RDAVWPYYTAQREPLAT E T DGIHPS YVQ+L ADLLH Y+V KFL W Sbjct: 10 TTDGVFSSQPYEFLLRNTLAAFKYAPAINTLHVWGFPFVYDSPQPALVALAKRYALSAISIRDAVWPYYTAQREPLATKSEVTMDGIHPSPYVQRLTADLLHTYVVGKFLEW 121
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A835ZIV9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIV9_9STRA) HSP 1 Score: 169 bits (429), Expect = 3.140e-49 Identity = 79/139 (56.83%), Postives = 106/139 (76.26%), Query Frame = 1 Query: 229 CAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645 CA+ ++GSP +DL V+EFTLNDG +Y I GAF+S YE +LR +++ F + PA++TLHFWGS F ++S Q LVAL++ Y L+AIS+RDA+WPYY +QREP AT +ECT DG+HPS V++L ADLL YI KF+ W Sbjct: 2 CAEDAMGSPTRLDLAVAEFTLNDGIKYDIGGAFDSLPYELMLRTLLSAFDHPPALLTLHFWGSRFEFKSPQAALVALSEAYDLTAISIRDAIWPYYKSQREPFATKQECTLDGLHPSLAVEQLTADLLFFYINLKFVKW 140
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA) HSP 1 Score: 179 bits (455), Expect = 2.010e-48 Identity = 93/216 (43.06%), Postives = 135/216 (62.50%), Query Frame = 1 Query: 1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTID-GAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645 L + G TD QL+ F KC+TPGSTI +G LGGSI+ + Y + QMCP +++ ++GARSS G++TLG CA+ + +P +DL VSEF+LND + YT D G F++ +E L R +++ + APA+ L FWG F ++SAQP A+ + Y ++ IS+RD VWPYY + P A ++ DG HP+D QK A+LL Y+ +F W Sbjct: 81 LKHRGAITDQQLHPLFLKCITPGSTIRIGALGGSITHLPSSYIWPVGRLIAQMCPEATVETFNGARSSHGALTLGMCART-VTAPA-LDLAVSEFSLNDRAHYTADDGTFSALPFELLTRTLLSAYDPAPAVFNLFFWGMSFSHDSAQPWHEAVGEHYDVTGISLRDLVWPYYETSKAPYARRQDVCVDGHHPNDRFQKFTAELLLLYVAQRFQEW 294
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A836CHL6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL6_9STRA) HSP 1 Score: 167 bits (424), Expect = 3.830e-48 Identity = 93/218 (42.66%), Postives = 128/218 (58.72%), Query Frame = 1 Query: 1 LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTG---YQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTIDGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADLLHKYIVDKFLAW 645 L N G TD QL + KC+TPGS I LG LGGSIS G Y + L+ MCP +++ L++ A +TGS+ LG CA++ +G + VD+ + EF+LND + Y G S +YE +R +T+F++APAI L FWG F SAQ +A+ Y L+ IS+RDAVWPY TAQR P A + KD HP++ LL Y+ ++FL W Sbjct: 13 LTNRGERTDEQLEALYHKCITPGSRIVLGQLGGSISADPAGGSNYGMTLQKFLQNMCPDATVQLHNAAAGTTGSLQLGMCARSGLG--QHVDVLLLEFSLNDYTHYHNRGQTESPAYELAVRAGLTSFQHAPAIFNLFFWGIGFQNTSAQEFHAPIARHYGLTGISLRDAVWPYLTAQRAPWAARGDVVKDSHHPTNAFHAYTGRLLALYVAERFLDW 228
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Match: A0A835Z775_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z775_9STRA) HSP 1 Score: 158 bits (400), Expect = 6.680e-45 Identity = 80/200 (40.00%), Postives = 124/200 (62.00%), Query Frame = 1 Query: 13 GTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLKQMCPVSSINLYDGARSSTGSMTLGFCAKASIGSPEEVDLFVSEFTLNDGSRYTI-DGAFNSQSYEFLLRNVITTFKYAPAIITLHFWGSPFVYESAQPDLVALAQRYKLSAISMRDAVWPYYTAQREPLATVEECTKDGIHPSDYVQKLAADL 609 G +T+ QL N F KCVTPG+ IN+G +GGSI++ + + + L +CP + + +++GAR+S G++TLG CA+A + E+D+ + EF+LND +YT+ +G F+S YE R V+T PA+ + FWG F Y+SAQP + + Y ++ IS+RD VWPY++ R P AT + D HP+ +V L A + Sbjct: 11 GASTEAQLRNVFLKCVTPGADINVGAIGGSITEHDDSWAGNFSALLSHLCPRAQVRMHNGARASHGALTLGLCARAVMA--PELDIAMLEFSLNDQGQYTLPNGTFSSLPYELATRTVLTGTDPTPAVFGISFWGRSFTYDSAQPYHEEVHKLYGVTGISLRDMVWPYFSKGRAPFATKADVCSDVHHPNAFVHGLTAQV 208 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130065 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10879 ID=mRNA_10879|Name=jgi.p|Trimin1|130065|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=645bp|location=Sequence derived from alignment at Contig_70:298911..300033+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGGCCAACACCGGAACAACTACTGACACCCAGCTGAACAACTTCTTTCGback to top protein sequence of jgi.p|Trimin1|130065 >Trimin1|130065|gw1.70.14.1 ID=Trimin1|130065|gw1.70.14.1|Name=jgi.p|Trimin1|130065|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=215bp LANTGTTTDTQLNNFFRKCVTPGSTINLGILGGSISQFSTGYQVKWISRLback to top mRNA from alignment at Contig_70:298911..300033+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10879 ID=mRNA_10879|Name=jgi.p|Trimin1|130065|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1123bp|location=Sequence derived from alignment at Contig_70:298911..300033+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_70:298911..300033+ >mRNA_10879 ID=mRNA_10879|Name=jgi.p|Trimin1|130065|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=645bp|location=Sequence derived from alignment at Contig_70:298911..300033+ (Tribonema minus UTEX_B_3156 )back to top |