mRNA_10673 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130966
Unique NamemRNA_10673
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|130966 vs. uniprot
Match: A0A835ZDQ5_9STRA (Vacuolar protein-like protein sorting 24 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDQ5_9STRA)

HSP 1 Score: 365 bits (937), Expect = 5.040e-127
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1
Query:    1 KKVDPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTNEDEVDQEVEKVLAEITATTMAGAEEAPVGEPQVQVAEQEQVPAEAEQEDPAELASM 618
            KKVDPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTNEDEVDQEVEKVLAEITATTMAGAEEAPVGEPQVQVAEQEQVPAEAEQEDPAELASM
Sbjct:    1 KKVDPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTNEDEVDQEVEKVLAEITATTMAGAEEAPVGEPQVQVAEQEQVPAEAEQEDPAELASM 206          
BLAST of jgi.p|Trimin1|130966 vs. uniprot
Match: D7G7G8_ECTSI (Similar to vacuolar protein sorting 24 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7G8_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 4.080e-55
Identity = 101/183 (55.19%), Postives = 136/183 (74.32%), Query Frame = 1
Query:    1 KKVDPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTNED-EVDQEVEKVLAEITATTMAGAEEAPVGEPQ 546
            +KVDP+EQAKEW R++N E+R +ERQI S++  E K+ +DIK +AKEG+RNE+A+R+LA+++V  R  K RM+EGK Q+HSVQMQL+NQ+AL+KVTG + KSTE+M  +G LV IPELQ  M  LA EMERAGL EE++ D +  T     D + D EV+KV+AEIT   + GA +AP   P+
Sbjct:    7 RKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLSLTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE 189          
BLAST of jgi.p|Trimin1|130966 vs. uniprot
Match: W7TP08_9STRA (Snf7 family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP08_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.410e-40
Identity = 80/173 (46.24%), Postives = 123/173 (71.10%), Query Frame = 1
Query:    1 KKVDPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTNEDEVDQEVEKVLAEITATTMAGA 519
            KKV+P E+AK+  R++ REIR+++R +  ++ EE K+V++I+KLAK+G     A+ +LA+ +V  R+T+ +M  GK  + SVQMQ++ Q++ +KV GC+ KS +V++ +  LV IPEL     ++AREMERAGL EE++GDAM+    T+EDEVD EV+KVL E+    M+ A
Sbjct:   67 KKVEPMEEAKKLKRSIGREIRSVDRTLIHIEREERKIVKEIQKLAKQGETRRGALTILAKDLVRSRKTREKMVGGKAMLASVQMQIQMQMSTIKVAGCMQKSADVLKTLNALVKIPELSKVCQEMAREMERAGLVEEMVGDAMDSVDVTDEDEVDMEVQKVLEELAFNMMSDA 239          
BLAST of jgi.p|Trimin1|130966 vs. uniprot
Match: UPI00145575B8 (charged multivesicular body protein 3-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145575B8)

HSP 1 Score: 135 bits (341), Expect = 2.110e-36
Identity = 77/174 (44.25%), Postives = 125/174 (71.84%), Query Frame = 1
Query:   10 DPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTNEDEVD-QEVEKVLAEITATTMAGAEEA 528
            DP+EQ +EW R + +E R ++RQI+S++ EE K+ R IK+ AK+G ++    ++LA+++V  R+ KTR++  K Q++SV MQ+KNQLA+++++G LSKSTEVM+ M +L  + E+QATM ++++EM +AG+ EE+L D  E     + +E   +EVEK+L EITA  ++ A +A
Sbjct:   11 DPKEQVQEWTRNLTKESRKLDRQIRSIEREELKVKRSIKEAAKKGQKD--VCKILAKEIVNSRKAKTRIHTSKAQLNSVSMQMKNQLAVIRMSGALSKSTEVMKYMQQLCKVSEVQATMMEMSKEMMKAGIIEEMLEDTFESMEDDDLEEASSEEVEKILFEITANHLSDAPKA 182          
BLAST of jgi.p|Trimin1|130966 vs. uniprot
Match: UPI000A2A920C (charged multivesicular body protein 3 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A920C)

HSP 1 Score: 135 bits (339), Expect = 3.780e-36
Identity = 75/173 (43.35%), Postives = 120/173 (69.36%), Query Frame = 1
Query:   13 PQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTN-EDEVDQEVEKVLAEITATTMAGAEEA 528
            P+EQ +EW+ ++ +E R ++RQI+++ NEE K+ R IK  AK+G ++    R+LA++++  R+  ++MY  K Q++SV+M +K QLA +++ G + KS EVM  M KLV +PE+QATMT+L++EM +AG+ EE+L D  E     + E+  D+EVEK+L E+TA  +  AE A
Sbjct:   12 PKEQVREWSASLRKEGRVLDRQIRAIKNEEMKVQRSIKDAAKKGDKD--VCRILAKELINSRKAVSKMYASKAQLNSVEMSMKTQLATIRMAGAMEKSAEVMAYMQKLVKVPEIQATMTELSKEMMKAGIIEEMLEDTFEGLEDDDLEEAADEEVEKILFEVTAGVLGNAEHA 182          
BLAST of jgi.p|Trimin1|130966 vs. uniprot
Match: A0A8J2S9J1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9J1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.060e-35
Identity = 83/197 (42.13%), Postives = 126/197 (63.96%), Query Frame = 1
Query:    1 KKVDPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTN-EDEVDQEVEKVLAEITATTMAGAEEAPVGEPQVQVAEQEQVPAEAE 588
            K  DPQE+ K+W R + +E R ++R+I  ++  E K   + +K  KEG ++  A +++AR++V  R  + RM   K QI+SV MQL+ Q A+V+  GC+ KSTEVM+ M KLV +PELQ TM ++ REMER+GL EE++GDA+++  G + E+E + +V KV+ E+      G  +AP   P+ Q  E    PAEA+
Sbjct:   11 KAKDPQEEMKKWRRELRKEQRAMDREISKLEQMERKSRDECRKYGKEGRQD--ACKIVAREIVRTRAARNRMLMAKAQINSVNMQLQTQAAMVRAAGCMKKSTEVMRCMNKLVKLPELQKTMMEMQREMERSGLIEEVVGDALDELDGDDVEEETELQVNKVVEELAGDLFKGQTDAPETLPEQQAVE----PAEAD 201          
BLAST of jgi.p|Trimin1|130966 vs. uniprot
Match: C3YIV6_BRAFL (Uncharacterized protein n=3 Tax=Branchiostoma TaxID=7737 RepID=C3YIV6_BRAFL)

HSP 1 Score: 131 bits (329), Expect = 1.480e-34
Identity = 75/172 (43.60%), Postives = 116/172 (67.44%), Query Frame = 1
Query:   10 DPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTN--EDEVDQEVEKVLAEITATTMAGA 519
            DP+EQ +EW   + ++ R ++RQI+ +  EE K+ R +K+ AK+G ++    R+LA++MV  R+  +++Y  K QI+SV M +KNQL ++KV+G + KSTEVM+ M  LV +PE+QATM DL++EM +AG+ EE+L D  E        E+E + EVEK+L E+TA  +  A
Sbjct:   11 DPKEQVREWTSQLRKQDRLLDRQIRGIQREEEKVKRSLKEAAKKGDKD--TCRILAKEMVRSRKAVSKIYTSKAQINSVSMGMKNQLGVLKVSGAMEKSTEVMKYMQNLVKVPEIQATMRDLSKEMMKAGIIEEMLDDTFESLEDDEDLEEETEAEVEKILFELTAGALGQA 180          
BLAST of jgi.p|Trimin1|130966 vs. uniprot
Match: A0A210Q9E1_MIZYE (Charged multivesicular body protein 3 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210Q9E1_MIZYE)

HSP 1 Score: 130 bits (328), Expect = 1.980e-34
Identity = 78/174 (44.83%), Postives = 118/174 (67.82%), Query Frame = 1
Query:   13 PQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAME--DTMGTNEDEVDQEVEKVLAEITATTMAGAEEA 528
            P+E  +EWN  + +E   I+R IKS+  EEAK+ R+IK LAK+G ++  A+++LA+++V  R+   R+Y  K Q++SV MQLKNQ A+V++TG L KS EV++ M +LV + ++  TM ++++EM +AG+ E  + DA E  D     E+E D EVEKVL E+TA T+  A EA
Sbjct:   12 PKELVQEWNSKLRKEGHNIDRSIKSIQREEAKVTREIKALAKKGDKD--AIKILAKEVVRSRKAVNRLYSSKAQLNSVSMQLKNQAAMVRMTGALQKSGEVLKSMQELVKVSDISNTMREMSKEMMKAGIMEXXMEDAFESMDDQDELEEEADTEVEKVLFELTAGTLGKAPEA 183          
BLAST of jgi.p|Trimin1|130966 vs. uniprot
Match: UPI001BB206FD (charged multivesicular body protein 3-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB206FD)

HSP 1 Score: 130 bits (327), Expect = 2.570e-34
Identity = 74/175 (42.29%), Postives = 120/175 (68.57%), Query Frame = 1
Query:    4 KVDPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTNEDEVDQ-EVEKVLAEITATTMAGAEE 525
            K DP+EQ +EW+  + +E R ++RQI+++   EAK+ R IK+ AK+   +    ++LA++++  R+ K R+Y  K  ++SV MQ+KNQLA ++++G + KSTEVM++M  LV +PE+QATM DL++EM +AG+ EE++ D  E      E+E  Q E+EKVL E+T+  ++ A E
Sbjct:    9 KKDPKEQVREWSAALRKEGRLLDRQIRTISTAEAKVQRSIKEAAKKNQLD--VCKILAKELIQSRKAKNRIYTSKAHLNSVDMQMKNQLATLRISGAMQKSTEVMKVMQSLVKVPEIQATMMDLSKEMMKAGIIEEMMEDTFESLDDDIEEEATQAEIEKVLFELTSGALSTAPE 181          
BLAST of jgi.p|Trimin1|130966 vs. uniprot
Match: T2M383_HYDVU (Charged multivesicular body protein 3 n=4 Tax=Hydra vulgaris TaxID=6087 RepID=T2M383_HYDVU)

HSP 1 Score: 130 bits (326), Expect = 3.440e-34
Identity = 77/166 (46.39%), Postives = 117/166 (70.48%), Query Frame = 1
Query:   10 DPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDA---MEDTMGTNEDEVDQEVEKVLAEIT 498
            DP+EQ +EW+  M +E R+++R I+++  EEAK+ R IK  AK+G ++     +LA++++  R+   ++Y  K Q++S++MQ+ NQLA+++V+G LSKSTEVMQ M  L+ IPELQATM + ++EM +AGL EE+L D    MED     EDE  +EVEK+L E+T
Sbjct:   11 DPKEQVREWSAGMRKEGRSLDRTIRTIKLEEAKVQRSIKDAAKKGQKD--VCYILAKEIINSRKAVNKLYSAKAQLNSIEMQMNNQLAMLRVSGSLSKSTEVMQSMQALMKIPELQATMMEFSKEMTKAGLIEEMLEDTFSGMED-QDELEDEAQEEVEKILFEVT 173          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130966 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDQ5_9STRA5.040e-127100.00Vacuolar protein-like protein sorting 24 (Fragment... [more]
D7G7G8_ECTSI4.080e-5555.19Similar to vacuolar protein sorting 24 homolog n=2... [more]
W7TP08_9STRA3.410e-4046.24Snf7 family protein n=1 Tax=Nannochloropsis gadita... [more]
UPI00145575B82.110e-3644.25charged multivesicular body protein 3-like n=1 Tax... [more]
UPI000A2A920C3.780e-3643.35charged multivesicular body protein 3 n=1 Tax=Exai... [more]
A0A8J2S9J1_9STRA1.060e-3542.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
C3YIV6_BRAFL1.480e-3443.60Uncharacterized protein n=3 Tax=Branchiostoma TaxI... [more]
A0A210Q9E1_MIZYE1.980e-3444.83Charged multivesicular body protein 3 n=2 Tax=Pect... [more]
UPI001BB206FD2.570e-3442.29charged multivesicular body protein 3-like n=1 Tax... [more]
T2M383_HYDVU3.440e-3446.39Charged multivesicular body protein 3 n=4 Tax=Hydr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_119contigContig_119:450570..452153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130966|gw1.119.13.1
BRITEko00000,ko00001,ko00002,ko04131,ko04147
KEGG ModuleM00412
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG koko:K12193
GOsGO:0000815,GO:0000920,GO:0002020,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006900,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0008333,GO:0009056,GO:0009057,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0019538,GO:0019899,GO:0019941,GO:0022411,GO:0022607,GO:0030163,GO:0030496,GO:0031090,GO:0031210,GO:0031410,GO:0031982,GO:0032386,GO:0032465,GO:0032467,GO:0032509,GO:0032510,GO:0032511,GO:0032535,GO:0032879,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0034622,GO:0035091,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040012,GO:0040013,GO:0040017,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0042886,GO:0043162,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043328,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0045787,GO:0046605,GO:0046618,GO:0046755,GO:0046907,GO:0046983,GO:0048284,GO:0048518,GO:0048519,GO:0048522,GO:0048524,GO:0048525,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0050997,GO:0051036,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051258,GO:0051259,GO:0051291,GO:0051301,GO:0051302,GO:0051493,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051781,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0061763,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070405,GO:0070507,GO:0070676,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0090066,GO:0090068,GO:0090174,GO:0097352,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1901981,GO:1902186,GO:1902187,GO:1902188,GO:1902936,GO:1903649,GO:1903900,GO:1903901,GO:1903902,GO:1904669,GO:1990381,GO:2000641
Preferred nameCHMP3
Descriptionvacuolar transport
COG categoryN
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5491@1|root,KOG3229@2759|Eukaryota
Evalue6.69e-56
Seed ortholog2880.D7G7G8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSnf7 family
Ec32 orthologEc-02_000210.1
TranscriptId131288
TrackFilteredModels1
ProteinId130966
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130966gene_10673Tribonema minus UTEX_B_3156 geneContig_119 450570..452153 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10673_1exon_10673_1Tribonema minus UTEX_B_3156 exonContig_119 450570..451004 +
exon_10673_2exon_10673_2Tribonema minus UTEX_B_3156 exonContig_119 451971..452153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10673CDS_10673Tribonema minus UTEX_B_3156 CDSContig_119 450570..451004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130966Trimin1|130966|gw1.119.13.1Tribonema minus UTEX_B_3156 polypeptideContig_119 450570..452153 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10673 ID=mRNA_10673|Name=jgi.p|Trimin1|130966|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=618bp|location=Sequence derived from alignment at Contig_119:450570..452153+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGAAGGTCGATCCGCAGGAGCAGGCCAAGGAATGGAACAGGACTATGAA
CAGGGAGATTCGCACAATAGAGCGGCAAATCAAGTCCATGGACAACGAGG
AGGCCAAGCTTGTGAGGGACATCAAAAAGCTGGCCAAAGAAGGGAGCAGA
AACGAGAGAGCAGTGCGCGTACTGGCGAGGCAGATGGTCACACTGCGCCA
GACCAAAACGCGCATGTACGAGGGCAAGGTGCAGATCCACAGCGTCCAGA
TGCAGCTGAAGAATCAGCTGGCGCTGGTGAAGGTGACAGGGTGTTTGAGC
AAGAGCACCGAGGTGATGCAGATGATGGGCAAGCTTGTGAGCATACCGGA
GCTGCAGGCGACTATGACAGACCTGGCGCGGGAGATGGAGAGGGCTGGGC
TGACGGAGGAGATATTGGGTGATGCCATGGAAGATACGATGGGGACCAAC
GAGGACGAAGTAGACCAGGAAGTGGAGAAGGTGTTGGCGGAGATCACCGC
TACCACGATGGCGGGGGCAGAGGAGGCGCCTGTTGGCGAACCGCAAGTGC
AGGTCGCAGAGCAGGAGCAAGTGCCTGCAGAAGCAGAGCAAGAAGACCCG
GCTGAGCTGGCCAGCATG
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protein sequence of jgi.p|Trimin1|130966

>Trimin1|130966|gw1.119.13.1 ID=Trimin1|130966|gw1.119.13.1|Name=jgi.p|Trimin1|130966|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=206bp
KKVDPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSR
NERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLS
KSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTN
EDEVDQEVEKVLAEITATTMAGAEEAPVGEPQVQVAEQEQVPAEAEQEDP
AELASM
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mRNA from alignment at Contig_119:450570..452153+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10673 ID=mRNA_10673|Name=jgi.p|Trimin1|130966|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1584bp|location=Sequence derived from alignment at Contig_119:450570..452153+ (Tribonema minus UTEX_B_3156 )
AAGAAGGTCGATCCGCAGGAGCAGGCCAAGGAATGGAACAGGACTATGAA CAGGGAGATTCGCACAATAGAGCGGCAAATCAAGTCCATGGACAACGAGG AGGCCAAGCTTGTGAGGGACATCAAAAAGCTGGCCAAAGAAGGGAGCAGA AACGAGAGAGCAGTGCGCGTACTGGCGAGGCAGATGGTCACACTGCGCCA GACCAAAACGCGCATGTACGAGGGCAAGGTGCAGATCCACAGCGTCCAGA TGCAGCTGAAGAATCAGCTGGCGCTGGTGAAGGTGACAGGGTGTTTGAGC AAGAGCACCGAGGTGATGCAGATGATGGGCAAGCTTGTGAGCATACCGGA GCTGCAGGCGACTATGACAGACCTGGCGCGGGAGATGGAGAGGGCTGGGC TGACGGAGGAGATATTGGGTGATGCCATGGAAGATGTGAGTGCTCAGCTC TCGCTGCCACGCTGCTTTCAGTCAGCTGCGTGCGAGCCAGAGGCCATTGA GTAGTTTGGTGCTTGCAAGGACTTATGTATGAGTGTACGTGTCTTCCAGC AATTTACCAATTTTGTTATCCGTGCACGACACACTGTTCATCAGGCCCGT AGCTATGACTGATTGGATTTTTGAGCACGCACTCACCATGGCTGCAACGA CTTGAGGCAATCTGAAGTCTGAGATGCTGTTGGGGCATCACACGCACTTC ATGACTTGCGCCCGAGCGGCTCAAAATGCTTCAAACCGCAGTATCTACGT TGCTGATGAGTGTCAATTCGTTGAATGTATCCCGCAACACATGAAGATCA CAGTCTCAACAAACAAGTGATGTCAGAATGAGGTTATGCACACGTGTGCA CACAGTGCCTGCACGAAATCCAATGCGCTGAGCATCATGTATTGCTCTGC ATGTGCCCTTGCTACACAATGTCGTGTACCTCGCATCGGTAGCCACTGAC AGATATGAGAGTTCAGCAGCACAGTCGACAAGCCGCGAAGCATATTTGAA AGTGCTGATATGGTGACTGTTGCCTGTCACTGCAAACCTGCTTGAATCTT CAATGCAATTCAACACCAGCATGTGATTGCATACCATGTCGTTTGTAATG GCCAGAAGAGAGTCACGTGTCAGCTTCACAGAGTTTGAATGCACAGGTGG CTCGAACAACGTACATATACTGCAGTCAGAGCAGGTGGACAGGTCCGCAG GGCTGAGCTCATGTGCATGTGCTGCATCGTTTAAATGCCTATGGCCACTT CATGCACAGTATCGTGGCCTGCGTTGGTGCACAGCAATTCGTTGTCACAG GTCTCACACTCTGTGCTGGCAGCAATTGCCGCAGCAGGTGTTTCATCTCG CATACCGTCAGACACACAACTTACGTTCTCTGCGTGCTTGTCCGACCACA GACGATGGGGACCAACGAGGACGAAGTAGACCAGGAAGTGGAGAAGGTGT TGGCGGAGATCACCGCTACCACGATGGCGGGGGCAGAGGAGGCGCCTGTT GGCGAACCGCAAGTGCAGGTCGCAGAGCAGGAGCAAGTGCCTGCAGAAGC AGAGCAAGAAGACCCGGCTGAGCTGGCCAGCATG
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Coding sequence (CDS) from alignment at Contig_119:450570..452153+

>mRNA_10673 ID=mRNA_10673|Name=jgi.p|Trimin1|130966|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=618bp|location=Sequence derived from alignment at Contig_119:450570..452153+ (Tribonema minus UTEX_B_3156 )
AAGAAGGTCGATCCGCAGGAGCAGGCCAAGGAATGGAACAGGACTATGAA
CAGGGAGATTCGCACAATAGAGCGGCAAATCAAGTCCATGGACAACGAGG
AGGCCAAGCTTGTGAGGGACATCAAAAAGCTGGCCAAAGAAGGGAGCAGA
AACGAGAGAGCAGTGCGCGTACTGGCGAGGCAGATGGTCACACTGCGCCA
GACCAAAACGCGCATGTACGAGGGCAAGGTGCAGATCCACAGCGTCCAGA
TGCAGCTGAAGAATCAGCTGGCGCTGGTGAAGGTGACAGGGTGTTTGAGC
AAGAGCACCGAGGTGATGCAGATGATGGGCAAGCTTGTGAGCATACCGGA
GCTGCAGGCGACTATGACAGACCTGGCGCGGGAGATGGAGAGGGCTGGGC
TGACGGAGGAGATATTGGGTGATGCCATGGAAGATACGATGGGGACCAAC
GAGGACGAAGTAGACCAGGAAGTGGAGAAGGTGTTGGCGGAGATCACCGC
TACCACGATGGCGGGGGCAGAGGAGGCGCCTGTTGGCGAACCGCAAGTGC
AGGTCGCAGAGCAGGAGCAAGTGCCTGCAGAAGCAGAGCAAGAAGACCCG
GCTGAGCTGGCCAGCATG
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