mRNA_10624 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131300
Unique NamemRNA_10624
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|131300 vs. uniprot
Match: A0A835ZDM1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDM1_9STRA)

HSP 1 Score: 681 bits (1757), Expect = 3.780e-246
Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 1 
Query:    1 VFGFCSHVELCRLRQTGKLFHRICSQDELWRGLSLKQALVPPAEASVAMQAMSLRTYRQLVEATHKLQLPQGMLGYWRTEGGAGDPQDGYEGELLSITAIAGGLMCRTVQGDGSKRELFRVRVKARPAPEEGVVVSFFNLEHDLSPHAVLIARGTIGAAKVGLRRISSTSFQLVRSGVPRTFVRVQQPSPAQDLQGADALRQMPDVEGLWSAHYVSSAAVILQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATSGLVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDCLVYGPRAAHGFSIIWREPKHGVRIIVDFARL 1143
            VFGFCSHVELCRLRQTGKLFHRICSQDELWRGLSLKQALVPPAEASVAMQAMSLRTYRQLVEATHKLQLPQGMLGYWRTEGGAGDPQDGYEGELLSITAIAGGLMCRTVQGDGSKRELFRVRVKARPAPEEGVVVSFFNLEHDLSPHAVLIARGTIGAAKVGLRRISSTSFQLVRSGVPRTFVRVQQPSPAQDLQGADALRQMPDVEGLWSAHYVSSAAVILQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATSGLVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDCLVYGPRAAHGFSIIWREPKHGVRIIVDFARL
Sbjct:    1 VFGFCSHVELCRLRQTGKLFHRICSQDELWRGLSLKQALVPPAEASVAMQAMSLRTYRQLVEATHKLQLPQGMLGYWRTEGGAGDPQDGYEGELLSITAIAGGLMCRTVQGDGSKRELFRVRVKARPAPEEGVVVSFFNLEHDLSPHAVLIARGTIGAAKVGLRRISSTSFQLVRSGVPRTFVRVQQPSPAQDLQGADALRQMPDVEGLWSAHYVSSAAVILQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATSGLVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDCLVYGPRAAHGFSIIWREPKHGVRIIVDFARL 381
[Close]
BLAST of jgi.p|Trimin1|131300 vs. uniprot
Match: A0A835ZDD8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.940e-26
Identity = 70/134 (52.24%), Postives = 84/134 (62.69%), Query Frame = 1 
Query:  760 LLMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATS-GLVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDCLVY------GPRAAHGFSIIWREPKHGVRIIVDFAR 1140
            LL RG K+VG  +  +G         SF VDLAR YDV AE+AA S GLVV F   GA V+DL  RAP++ARWCKG+G VN  +   A     VDVDCL+Y      G  A + +SIIWREP HG+RI+VDF R
Sbjct:    9 LLFRGTKIVGDPHVPAGRC-------SFLVDLARDYDVDAEIAAASTGLVVVFGPNGAQVLDLGLRAPAVARWCKGRGQVNMRSDRWAPTW--VDVDCLLYRTGAGAGGAAEYAYSIIWREPTHGIRILVDFRR 133
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131300 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZDM1_9STRA3.780e-246100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZDD8_9STRA5.940e-2652.24Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_119contigContig_119:222376..223518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131300|gw1.119.15.1
Hectar predicted targeting categoryother localisation
TranscriptId131622
TrackFilteredModels1
ProteinId131300
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131300gene_10624Tribonema minus UTEX_B_3156 geneContig_119 222376..223518 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10624_1exon_10624_1Tribonema minus UTEX_B_3156 exonContig_119 222376..223518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10624CDS_10624Tribonema minus UTEX_B_3156 CDSContig_119 222376..223518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131300Trimin1|131300|gw1.119.15.1Tribonema minus UTEX_B_3156 polypeptideContig_119 222376..223518 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10624 ID=mRNA_10624|Name=jgi.p|Trimin1|131300|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1143bp|location=Sequence derived from alignment at Contig_119:222376..223518- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCTTCGGCTTCTGCTCTCACGTAGAGCTCTGCCGGCTGCGACAGACCGG
CAAGCTCTTTCATCGCATCTGCAGCCAAGATGAATTGTGGAGAGGCCTTT
CGCTCAAGCAAGCGCTGGTGCCACCCGCAGAAGCATCAGTCGCCATGCAG
GCGATGAGCCTGCGCACGTACCGCCAGCTGGTAGAGGCCACGCACAAGCT
GCAGCTGCCTCAGGGCATGTTGGGGTACTGGAGGACGGAAGGCGGTGCGG
GAGACCCACAGGACGGATACGAGGGAGAGCTCCTTAGCATCACCGCCATA
GCTGGCGGCCTCATGTGCCGCACCGTGCAAGGCGACGGTAGCAAAAGGGA
GCTCTTCAGGGTTCGTGTCAAGGCGCGCCCGGCCCCCGAAGAGGGCGTGG
TTGTCAGCTTTTTCAACCTGGAGCACGACCTCTCACCCCATGCTGTGCTG
ATTGCACGTGGCACCATCGGAGCAGCCAAGGTGGGCCTGCGGCGCATCAG
CAGCACCTCTTTCCAGCTGGTTCGCAGCGGCGTCCCCCGCACCTTCGTCA
GGGTCCAGCAGCCATCCCCGGCGCAGGACCTGCAGGGCGCGGACGCCCTC
CGCCAGATGCCCGACGTGGAGGGGCTGTGGAGCGCGCACTACGTCAGCAG
CGCGGCGGTAATCCTGCAGACGACGCTCCACCTGCAGCAGCAGCCGAGCG
CCGCCGCAGCAGCAGCAGCGCCGGCGTCCGCCGCCGCCGGCAGTACGGCG
CCGCCGCAGCTCCTCATGCGCGGCGCCAAGGTCGTCGGCAGCAGCAACAC
CAACAGCGGCTCCACGGGCAGCGCGGACAGGCACTGGTCGTTCGCCGTGG
ACCTCGCGCGCGGCTACGACGTCGCCGCGGAGATGGCGGCGACCAGCGGC
CTCGTCGTGGCCTTCGTCGCGGGCGGCGCGCACGTCATCGACCTGCACGC
GCGCGCACCATCCATCGCGCGCTGGTGCAAGGGCCAGGGCCACGTCAACG
GCGGCGCCGCCGCCGGCGCCGCCCGCGGCGCCGTCGTCGACGTCGACTGC
CTCGTCTACGGCCCGCGCGCCGCGCACGGCTTCAGCATCATCTGGCGCGA
GCCCAAGCACGGCGTGCGCATCATCGTCGACTTTGCGCGCCTG
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protein sequence of jgi.p|Trimin1|131300

>Trimin1|131300|gw1.119.15.1 ID=Trimin1|131300|gw1.119.15.1|Name=jgi.p|Trimin1|131300|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=381bp
VFGFCSHVELCRLRQTGKLFHRICSQDELWRGLSLKQALVPPAEASVAMQ
AMSLRTYRQLVEATHKLQLPQGMLGYWRTEGGAGDPQDGYEGELLSITAI
AGGLMCRTVQGDGSKRELFRVRVKARPAPEEGVVVSFFNLEHDLSPHAVL
IARGTIGAAKVGLRRISSTSFQLVRSGVPRTFVRVQQPSPAQDLQGADAL
RQMPDVEGLWSAHYVSSAAVILQTTLHLQQQPSAAAAAAAPASAAAGSTA
PPQLLMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATSG
LVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDC
LVYGPRAAHGFSIIWREPKHGVRIIVDFARL
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mRNA from alignment at Contig_119:222376..223518-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10624 ID=mRNA_10624|Name=jgi.p|Trimin1|131300|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1143bp|location=Sequence derived from alignment at Contig_119:222376..223518- (Tribonema minus UTEX_B_3156 )
GTCTTCGGCTTCTGCTCTCACGTAGAGCTCTGCCGGCTGCGACAGACCGG
CAAGCTCTTTCATCGCATCTGCAGCCAAGATGAATTGTGGAGAGGCCTTT
CGCTCAAGCAAGCGCTGGTGCCACCCGCAGAAGCATCAGTCGCCATGCAG
GCGATGAGCCTGCGCACGTACCGCCAGCTGGTAGAGGCCACGCACAAGCT
GCAGCTGCCTCAGGGCATGTTGGGGTACTGGAGGACGGAAGGCGGTGCGG
GAGACCCACAGGACGGATACGAGGGAGAGCTCCTTAGCATCACCGCCATA
GCTGGCGGCCTCATGTGCCGCACCGTGCAAGGCGACGGTAGCAAAAGGGA
GCTCTTCAGGGTTCGTGTCAAGGCGCGCCCGGCCCCCGAAGAGGGCGTGG
TTGTCAGCTTTTTCAACCTGGAGCACGACCTCTCACCCCATGCTGTGCTG
ATTGCACGTGGCACCATCGGAGCAGCCAAGGTGGGCCTGCGGCGCATCAG
CAGCACCTCTTTCCAGCTGGTTCGCAGCGGCGTCCCCCGCACCTTCGTCA
GGGTCCAGCAGCCATCCCCGGCGCAGGACCTGCAGGGCGCGGACGCCCTC
CGCCAGATGCCCGACGTGGAGGGGCTGTGGAGCGCGCACTACGTCAGCAG
CGCGGCGGTAATCCTGCAGACGACGCTCCACCTGCAGCAGCAGCCGAGCG
CCGCCGCAGCAGCAGCAGCGCCGGCGTCCGCCGCCGCCGGCAGTACGGCG
CCGCCGCAGCTCCTCATGCGCGGCGCCAAGGTCGTCGGCAGCAGCAACAC
CAACAGCGGCTCCACGGGCAGCGCGGACAGGCACTGGTCGTTCGCCGTGG
ACCTCGCGCGCGGCTACGACGTCGCCGCGGAGATGGCGGCGACCAGCGGC
CTCGTCGTGGCCTTCGTCGCGGGCGGCGCGCACGTCATCGACCTGCACGC
GCGCGCACCATCCATCGCGCGCTGGTGCAAGGGCCAGGGCCACGTCAACG
GCGGCGCCGCCGCCGGCGCCGCCCGCGGCGCCGTCGTCGACGTCGACTGC
CTCGTCTACGGCCCGCGCGCCGCGCACGGCTTCAGCATCATCTGGCGCGA
GCCCAAGCACGGCGTGCGCATCATCGTCGACTTTGCGCGCCTG
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Coding sequence (CDS) from alignment at Contig_119:222376..223518-

>mRNA_10624 ID=mRNA_10624|Name=jgi.p|Trimin1|131300|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1143bp|location=Sequence derived from alignment at Contig_119:222376..223518- (Tribonema minus UTEX_B_3156 )
GTCTTCGGCTTCTGCTCTCACGTAGAGCTCTGCCGGCTGCGACAGACCGG
CAAGCTCTTTCATCGCATCTGCAGCCAAGATGAATTGTGGAGAGGCCTTT
CGCTCAAGCAAGCGCTGGTGCCACCCGCAGAAGCATCAGTCGCCATGCAG
GCGATGAGCCTGCGCACGTACCGCCAGCTGGTAGAGGCCACGCACAAGCT
GCAGCTGCCTCAGGGCATGTTGGGGTACTGGAGGACGGAAGGCGGTGCGG
GAGACCCACAGGACGGATACGAGGGAGAGCTCCTTAGCATCACCGCCATA
GCTGGCGGCCTCATGTGCCGCACCGTGCAAGGCGACGGTAGCAAAAGGGA
GCTCTTCAGGGTTCGTGTCAAGGCGCGCCCGGCCCCCGAAGAGGGCGTGG
TTGTCAGCTTTTTCAACCTGGAGCACGACCTCTCACCCCATGCTGTGCTG
ATTGCACGTGGCACCATCGGAGCAGCCAAGGTGGGCCTGCGGCGCATCAG
CAGCACCTCTTTCCAGCTGGTTCGCAGCGGCGTCCCCCGCACCTTCGTCA
GGGTCCAGCAGCCATCCCCGGCGCAGGACCTGCAGGGCGCGGACGCCCTC
CGCCAGATGCCCGACGTGGAGGGGCTGTGGAGCGCGCACTACGTCAGCAG
CGCGGCGGTAATCCTGCAGACGACGCTCCACCTGCAGCAGCAGCCGAGCG
CCGCCGCAGCAGCAGCAGCGCCGGCGTCCGCCGCCGCCGGCAGTACGGCG
CCGCCGCAGCTCCTCATGCGCGGCGCCAAGGTCGTCGGCAGCAGCAACAC
CAACAGCGGCTCCACGGGCAGCGCGGACAGGCACTGGTCGTTCGCCGTGG
ACCTCGCGCGCGGCTACGACGTCGCCGCGGAGATGGCGGCGACCAGCGGC
CTCGTCGTGGCCTTCGTCGCGGGCGGCGCGCACGTCATCGACCTGCACGC
GCGCGCACCATCCATCGCGCGCTGGTGCAAGGGCCAGGGCCACGTCAACG
GCGGCGCCGCCGCCGGCGCCGCCCGCGGCGCCGTCGTCGACGTCGACTGC
CTCGTCTACGGCCCGCGCGCCGCGCACGGCTTCAGCATCATCTGGCGCGA
GCCCAAGCACGGCGTGCGCATCATCGTCGACTTTGCGCGCCTG
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