Trimin1|131300|gw1.119.15.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|131300
Unique Name	Trimin1\|131300\|gw1.119.15.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	381

Homology

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BLAST of jgi.p|Trimin1|131300 vs. uniprot
Match: A0A835ZDM1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDM1_9STRA)

HSP 1 Score: 681 bits (1757), Expect = 3.780e-246
Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 0

Query:    1 VFGFCSHVELCRLRQTGKLFHRICSQDELWRGLSLKQALVPPAEASVAMQAMSLRTYRQLVEATHKLQLPQGMLGYWRTEGGAGDPQDGYEGELLSITAIAGGLMCRTVQGDGSKRELFRVRVKARPAPEEGVVVSFFNLEHDLSPHAVLIARGTIGAAKVGLRRISSTSFQLVRSGVPRTFVRVQQPSPAQDLQGADALRQMPDVEGLWSAHYVSSAAVILQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATSGLVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDCLVYGPRAAHGFSIIWREPKHGVRIIVDFARL 381
            VFGFCSHVELCRLRQTGKLFHRICSQDELWRGLSLKQALVPPAEASVAMQAMSLRTYRQLVEATHKLQLPQGMLGYWRTEGGAGDPQDGYEGELLSITAIAGGLMCRTVQGDGSKRELFRVRVKARPAPEEGVVVSFFNLEHDLSPHAVLIARGTIGAAKVGLRRISSTSFQLVRSGVPRTFVRVQQPSPAQDLQGADALRQMPDVEGLWSAHYVSSAAVILQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATSGLVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDCLVYGPRAAHGFSIIWREPKHGVRIIVDFARL
Sbjct:    1 VFGFCSHVELCRLRQTGKLFHRICSQDELWRGLSLKQALVPPAEASVAMQAMSLRTYRQLVEATHKLQLPQGMLGYWRTEGGAGDPQDGYEGELLSITAIAGGLMCRTVQGDGSKRELFRVRVKARPAPEEGVVVSFFNLEHDLSPHAVLIARGTIGAAKVGLRRISSTSFQLVRSGVPRTFVRVQQPSPAQDLQGADALRQMPDVEGLWSAHYVSSAAVILQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATSGLVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDCLVYGPRAAHGFSIIWREPKHGVRIIVDFARL 381

[Close]

BLAST of jgi.p|Trimin1|131300 vs. uniprot
Match: A0A835ZDD8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.940e-26
Identity = 70/134 (52.24%), Postives = 84/134 (62.69%), Query Frame = 0

Query:  254 LLMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATS-GLVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDCLVY------GPRAAHGFSIIWREPKHGVRIIVDFAR 380
            LL RG K+VG  +  +G         SF VDLAR YDV AE+AA S GLVV F   GA V+DL  RAP++ARWCKG+G VN  +   A     VDVDCL+Y      G  A + +SIIWREP HG+RI+VDF R
Sbjct:    9 LLFRGTKIVGDPHVPAGRC-------SFLVDLARDYDVDAEIAAASTGLVVVFGPNGAQVLDLGLRAPAVARWCKGRGQVNMRSDRWAPTW--VDVDCLLYRTGAGAGGAAEYAYSIIWREPTHGIRILVDFRR 133

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|131300 vs. uniprot

BLAST of jgi.p|Trimin1|131300 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZDM1_9STRA	3.780e-246	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A835ZDD8_9STRA	5.940e-26	52.24	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 1..41

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_119	contig	Contig_119:222376..223518 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|131300	mRNA_10624	Tribonema minus UTEX_B_3156	mRNA	Contig_119 222376..223518 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|131300|gw1.119.15.1 ID=Trimin1|131300|gw1.119.15.1|Name=jgi.p|Trimin1|131300|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=381bp
VFGFCSHVELCRLRQTGKLFHRICSQDELWRGLSLKQALVPPAEASVAMQ
AMSLRTYRQLVEATHKLQLPQGMLGYWRTEGGAGDPQDGYEGELLSITAI
AGGLMCRTVQGDGSKRELFRVRVKARPAPEEGVVVSFFNLEHDLSPHAVL
IARGTIGAAKVGLRRISSTSFQLVRSGVPRTFVRVQQPSPAQDLQGADAL
RQMPDVEGLWSAHYVSSAAVILQTTLHLQQQPSAAAAAAAPASAAAGSTA
PPQLLMRGAKVVGSSNTNSGSTGSADRHWSFAVDLARGYDVAAEMAATSG
LVVAFVAGGAHVIDLHARAPSIARWCKGQGHVNGGAAAGAARGAVVDVDC
LVYGPRAAHGFSIIWREPKHGVRIIVDFARL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf